FF:11763-123H8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005664 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008576;DRR009448;DRZ000873;DRZ002258;DRZ012223;DRZ013608 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000479,UBERON:0007846,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000043,UBERON:0007845,UBERON:0002204 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000499,CL:0000630,CL:0000135,CL:0000386,CL:0000255,CL:0000388 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000280 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor1.CNhs12639.11763-123H8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor1.CNhs12639.11763-123H8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor1.CNhs12639.11763-123H8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor1.CNhs12639.11763-123H8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor1.CNhs12639.11763-123H8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11763-123H8 | |id=FF:11763-123H8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000280 | ||
|is_obsolete= | |||
|library_id=CNhs12639 | |||
|library_id_phase_based=2:CNhs12639 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11763 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11763 | |||
|name=tenocyte, donor1 | |name=tenocyte, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12639,LSID952,release012,COMPLETED | |profile_hcage=CNhs12639,LSID952,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.162756297945517,0,0,0,0,0.349149305445566,0,0.567271485729127,-0.084480111788897,0,0,0,0,0,0,0,0,0,0,0,0,0,0.44611901206994,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.301380436266785,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.456362250625352,0,0.0947978978873062,0.137352534412557,-0.0969923612426051,0,0,0.144200372203555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0874131152274664,0.0686762672062785,0,0,-0.0584468268118252,0.185276011808723,0,0.737505939001751,0.0686762672062785,0,0.0393171831748502,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0276973267161827,0,0,0,0.431257707648607,0.834373416779345,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.0393171831748502,0,0,0,0,0,0,0.137352534412557,0,0.737505939001751,0,0,-0.00563487586891281,0,0.232797502321979,-0.143515142523472,0,0,-0.0281167972064587,0,0,0,0,0,0,0,0,0,0.510165190001571,0,0.549029470829053,0,0,0,0,0.124995566612431,0.090374666677683,0,0.234852419553773,0.388017989547984,0,0.125654839356187,0,0,0.382922202411853,0,0.120664515622911,0.158823831093234,-0.221611588102807,0.305331363678872,0.0816400376313746,0,0,0,0.260183652852784,0.320709059552721,0,0,0.299272540215735,0.102178679093183,0,0,1.31522359223746,0,0.278633603578443,0.374618586884599,0,0,0,0,0,0,0,0.137352534412557,0,0,0,0,0,0.625282776237399,0.0688583008971214,0.0382662863686998,0,0.137352534412557,0,0.238181893163527,0,0.0147674468678412,-0.373286155956567,0.329810045933507,-0.0620802851638,-0.0379351820010488,0,0.0231228688811209,0.0100236458310839,0.330017472156744,-0.0359685248014828,0.452040173047229,0.319485615982105,0.137352534412557,0.0874131152274664,-0.0793889080400243,0.135540360525602,0.144295044813907,0.00490774569460845,0.499561753432103,0.0501849256951952,0,0,0.0598436079332535,0.0278030417717542,0,0,0.396145284168978,-0.0416554857873023,0.0857517229658965,0.13981338782577,0.0440469583208462,-0.0191784176550798,-0.0395325284566706,0.280069486105156,0.0078184890220596,0.485957542560068,0,0,0,0.0936761704766733,-0.0198016434080177,-0.159463922553327,0.0298620570940643,-0.0276152111856287,-0.0683442610773682,0,-0.053354018366857,0.069964004938841,0,0.0218971890283943,0.095160183876854,0,0,0.159800637212352,0,0.241543999416652,0.000152826194449451,-0.0831298924048144,-0.0955030271429882,0,-0.081165259751219,0,-0.13452978240707,0,-0.0257237119915612,0.0393732378058461,0,0.00824432833421551,0,0.0977165583149096,0.283609064647495,0.160521899552031,0.370552023617446,-0.0584468268118252,-0.0565345190274652,-0.07009559479619,-0.107748803531513,0.477850593594068,0.0134827699122391,0.368235418150064,0,0.346796497985119,0.113448697387659,0.00306095393461137,0.0725813316216291,0.137352534412557,0.0699991914299773,0,-0.4488481845026,0,-0.0617451692603058,0.133503663275026,-0.197745375164035,-0.219142558867207,0,-0.107083739090305,0.927565932130995,0.0295380303465679,0,0.000264368827938954,0,-0.0130145489220827,-0.0237585517643166,0.0718778697892538,-0.0703131894729163,0,0.281354646063215,0,0.137352534412557,0.297233830985053,0.273991297767564,0,0.0986298358855706,-0.0524223342238239,-0.0474354612057223,-0.115971073434934,0.706883721073987,0,0.465018650991888,0,0,-0.468575529405474,0.204882261608544,0.17316350505055,-0.115973807074199,0.0076128720902937,0.56115670735042,0,0,0.147984829925858,0,0.147638816252304,0,0,0.118515981816638,0.0207244214224238,0,0.0686762672062785,0.556780579989572,0.0501552550831305,0,0,0,0,0.0686762672062785,0,0.0303779922242109,0.0122125763837306,0.0410135673596423,0,0,0,0.137352534412557,0,0,0,0,0,0,0.638776008275694,0.040052855997574,-0.12301741567642,0,0,0,0,0.240638848071877,-0.0658840276821672,0.241543999416652,-0.131862706497632,0,0.0686762672062785,0,0,-0.0861409897892114,0,0,0,0,0.26778213883737,0.798484385042425,0,0,0,-0.27695440160179,0,0,0,0.0781069612759356,0.0490562510393069,0,0,0.617017953843475,0,0.0683864605641284,-0.0815818795468414,0,-0.0688440222997697,0.308098744629298,-0.119069989392312,0,0,-0.123994597377331,0,0.162756297945517,0.099119302223322,-0.0771766375715495,0,0.0477514912601614,0,0,0,0,0,0.137352534412557,-0.076961977987199,0.120771999708326,0,0,0,0,0,0,0,0,0,0,0.0436661146595538,0.149319942758141,0.137352534412557,0,0,0,0,0.137352534412557,0,0.0445702441273754,-0.193869792085291,0,0,0,0,0,0,0,0,-0.145913343772208,0,0,0,0,0,-0.0969923612426051,0,0,0,0.325512595891034,-0.168960223577794,0,0,-0.0358181327768624,0,0,0,0,0,0,0,0,0,0,0,0,0,0.948115718417423,0.618050260434232,0,0,0,0,0,0,0,0.567271485729127,0,0,0,0,0.211628222182057,0,0,0,0.136747614627495,0,0.349149305445566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0686762672062785,0,0,0,0.473546864685057,0.0685923521569819,0.258774871349843,0.0438768500058797,0,0,0.288932201607346,0,0,0,0,0,0,0.089431575679799,0.171598604332403,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00730833972136345,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0920328098005262,0,0,0,0,0,0,0.0307186078396615,0.448872268201522,0.0476580667954018,0,0,0,0.108370725463062,0.456362250625352,0,0.104607640018448,0.137352534412557,0.0705751469936553,0,0,0,0,0,0,0,0,0.137352534412557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.44611901206994,0,0,0,0,0,0,0,0,0,0,0,0,0.0686762672062785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137352534412557,0,0,0,0,0,0,0,0.0346649039308618,0,0,0,0,0,0,0,0.325512595891034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.673173768988707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301454854123593,0,0,0,0,0,0,0,0,0,0,0.0183622690573619,0,0,-0.0482220752390542,0,0.157167367186625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.550504042515712,0,0,0,0,0.193906888755733,0,0,0,0,0,0,0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| |||
|rna_box=123 | |rna_box=123 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=45.24675 | |rna_weight_ug=45.24675 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.02224664922288e-205!GO:0005737;cytoplasm;1.60722139124878e-180!GO:0043226;organelle;8.47338060434704e-155!GO:0043229;intracellular organelle;1.43346976308338e-154!GO:0043231;intracellular membrane-bound organelle;9.17705214121238e-154!GO:0043227;membrane-bound organelle;2.05338140472228e-153!GO:0044444;cytoplasmic part;7.28987821585012e-127!GO:0044422;organelle part;5.40899284713829e-119!GO:0044446;intracellular organelle part;1.26181494199116e-117!GO:0032991;macromolecular complex;1.78143852521764e-80!GO:0005515;protein binding;9.93462798308823e-77!GO:0030529;ribonucleoprotein complex;3.41503683560748e-69!GO:0044238;primary metabolic process;8.26668002222489e-68!GO:0044237;cellular metabolic process;2.38591022422758e-67!GO:0043170;macromolecule metabolic process;3.27951827930808e-64!GO:0043233;organelle lumen;2.37200630030582e-58!GO:0031974;membrane-enclosed lumen;2.37200630030582e-58!GO:0005739;mitochondrion;6.89348556364258e-55!GO:0003723;RNA binding;1.71796911598683e-54!GO:0044428;nuclear part;2.17370231555782e-54!GO:0005634;nucleus;3.04463457565113e-51!GO:0031090;organelle membrane;1.76013549934364e-46!GO:0016043;cellular component organization and biogenesis;1.32714647710451e-44!GO:0019538;protein metabolic process;1.83004620371607e-44!GO:0005840;ribosome;3.15537016669964e-43!GO:0006412;translation;1.83941988140333e-41!GO:0043234;protein complex;4.52665167613132e-41!GO:0044260;cellular macromolecule metabolic process;2.17892230492873e-39!GO:0015031;protein transport;3.57392342145648e-39!GO:0003735;structural constituent of ribosome;9.62429077917816e-39!GO:0033036;macromolecule localization;1.47922684608271e-38!GO:0044267;cellular protein metabolic process;3.86050152290686e-38!GO:0005829;cytosol;3.67251555622523e-37!GO:0045184;establishment of protein localization;1.4466164527728e-36!GO:0044429;mitochondrial part;1.64082347166277e-36!GO:0008104;protein localization;6.07821574351964e-36!GO:0006396;RNA processing;3.17654883662433e-35!GO:0033279;ribosomal subunit;4.89021281279322e-34!GO:0009059;macromolecule biosynthetic process;2.10911489991978e-33!GO:0009058;biosynthetic process;2.10911489991978e-33!GO:0031981;nuclear lumen;4.85891748801218e-33!GO:0031967;organelle envelope;3.70900470014946e-32!GO:0031975;envelope;8.23366317394484e-32!GO:0016071;mRNA metabolic process;1.03741408458737e-30!GO:0044249;cellular biosynthetic process;1.39048294435469e-30!GO:0046907;intracellular transport;1.39048294435469e-30!GO:0043283;biopolymer metabolic process;1.58349771534273e-30!GO:0010467;gene expression;5.28193460417285e-28!GO:0008380;RNA splicing;1.09454915385451e-27!GO:0065003;macromolecular complex assembly;3.87399737383975e-27!GO:0006886;intracellular protein transport;5.33496370534243e-26!GO:0006397;mRNA processing;6.69234832926561e-26!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.88201483024888e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.48903264526337e-26!GO:0005740;mitochondrial envelope;8.67474824664154e-25!GO:0022607;cellular component assembly;1.74568427029347e-24!GO:0006996;organelle organization and biogenesis;1.89588114592352e-24!GO:0043228;non-membrane-bound organelle;4.09584324387338e-24!GO:0043232;intracellular non-membrane-bound organelle;4.09584324387338e-24!GO:0005783;endoplasmic reticulum;1.51535216538515e-23!GO:0031966;mitochondrial membrane;2.51034651847421e-23!GO:0019866;organelle inner membrane;8.97103321577391e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.63922779475044e-22!GO:0005743;mitochondrial inner membrane;3.07630864320174e-21!GO:0005654;nucleoplasm;1.30126639265392e-20!GO:0006119;oxidative phosphorylation;1.76262682757848e-20!GO:0044445;cytosolic part;8.71036454637256e-20!GO:0005681;spliceosome;1.5534164590544e-19!GO:0012505;endomembrane system;3.32608600286216e-19!GO:0006457;protein folding;4.10377728088564e-19!GO:0051649;establishment of cellular localization;8.88377718777966e-19!GO:0051641;cellular localization;1.11495739809994e-18!GO:0006259;DNA metabolic process;3.09791719584581e-18!GO:0048770;pigment granule;7.23421999219089e-18!GO:0042470;melanosome;7.23421999219089e-18!GO:0015934;large ribosomal subunit;8.47970240848986e-18!GO:0005794;Golgi apparatus;1.04684695162752e-17!GO:0044432;endoplasmic reticulum part;1.13768331183899e-17!GO:0044455;mitochondrial membrane part;1.63194264293609e-17!GO:0015935;small ribosomal subunit;3.52285512533582e-17!GO:0016462;pyrophosphatase activity;4.1497496273946e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.2072859210522e-17!GO:0044451;nucleoplasm part;7.20971716623474e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;8.1985871268343e-17!GO:0008134;transcription factor binding;1.41767405580345e-16!GO:0017111;nucleoside-triphosphatase activity;1.6881821637507e-16!GO:0005746;mitochondrial respiratory chain;1.88098658516342e-15!GO:0007049;cell cycle;2.32260598614927e-15!GO:0022618;protein-RNA complex assembly;2.89115005055669e-15!GO:0000502;proteasome complex (sensu Eukaryota);3.35594344826385e-15!GO:0043285;biopolymer catabolic process;3.85333611462277e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.91787657173521e-15!GO:0000166;nucleotide binding;1.36466654704941e-14!GO:0048193;Golgi vesicle transport;1.94596425915101e-14!GO:0031980;mitochondrial lumen;1.95855618321303e-14!GO:0005759;mitochondrial matrix;1.95855618321303e-14!GO:0050136;NADH dehydrogenase (quinone) activity;6.01819973361586e-14!GO:0003954;NADH dehydrogenase activity;6.01819973361586e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.01819973361586e-14!GO:0006512;ubiquitin cycle;7.18913670627156e-14!GO:0006605;protein targeting;7.41304914748587e-14!GO:0044265;cellular macromolecule catabolic process;7.43700098850935e-14!GO:0009057;macromolecule catabolic process;1.40096001403314e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.78744287754972e-13!GO:0003676;nucleic acid binding;1.80172577695889e-13!GO:0051082;unfolded protein binding;1.83391998868151e-13!GO:0051186;cofactor metabolic process;2.17784583207139e-13!GO:0030163;protein catabolic process;2.4208401812147e-13!GO:0016874;ligase activity;2.59188067400997e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;3.49744844539081e-13!GO:0005793;ER-Golgi intermediate compartment;3.70255204514462e-13!GO:0008135;translation factor activity, nucleic acid binding;3.9936044330125e-13!GO:0019941;modification-dependent protein catabolic process;6.91276658093388e-13!GO:0043632;modification-dependent macromolecule catabolic process;6.91276658093388e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.55393545843656e-13!GO:0044257;cellular protein catabolic process;8.58252470648764e-13!GO:0016192;vesicle-mediated transport;1.48662467819518e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.48662467819518e-12!GO:0005730;nucleolus;1.60123447086138e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.59872740345954e-12!GO:0005761;mitochondrial ribosome;3.32548369360859e-12!GO:0000313;organellar ribosome;3.32548369360859e-12!GO:0030964;NADH dehydrogenase complex (quinone);3.99999796526669e-12!GO:0045271;respiratory chain complex I;3.99999796526669e-12!GO:0005747;mitochondrial respiratory chain complex I;3.99999796526669e-12!GO:0042775;organelle ATP synthesis coupled electron transport;5.28250213954888e-12!GO:0042773;ATP synthesis coupled electron transport;5.28250213954888e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.94069522665131e-12!GO:0044248;cellular catabolic process;1.00865047003439e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.20110079785016e-11!GO:0005789;endoplasmic reticulum membrane;1.95282940037395e-11!GO:0022402;cell cycle process;1.97744739160997e-11!GO:0000278;mitotic cell cycle;3.20553994718472e-11!GO:0016070;RNA metabolic process;6.53761591277631e-11!GO:0003743;translation initiation factor activity;1.93008147545903e-10!GO:0012501;programmed cell death;1.93063836692066e-10!GO:0003712;transcription cofactor activity;2.07520861212575e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;2.89300910654445e-10!GO:0000375;RNA splicing, via transesterification reactions;2.89300910654445e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.89300910654445e-10!GO:0006732;coenzyme metabolic process;3.74217624049632e-10!GO:0006915;apoptosis;3.9866790132336e-10!GO:0009055;electron carrier activity;4.35010234450248e-10!GO:0017076;purine nucleotide binding;4.60438264253234e-10!GO:0006413;translational initiation;5.6672849252117e-10!GO:0032553;ribonucleotide binding;8.17261239472393e-10!GO:0032555;purine ribonucleotide binding;8.17261239472393e-10!GO:0006974;response to DNA damage stimulus;1.51996824143275e-09!GO:0005788;endoplasmic reticulum lumen;1.85420501272623e-09!GO:0006913;nucleocytoplasmic transport;2.03006929228356e-09!GO:0008219;cell death;2.23485677602672e-09!GO:0016265;death;2.23485677602672e-09!GO:0016491;oxidoreductase activity;2.61939690878752e-09!GO:0048523;negative regulation of cellular process;3.45269356641749e-09!GO:0006446;regulation of translational initiation;3.90906935108297e-09!GO:0043412;biopolymer modification;3.90906935108297e-09!GO:0009259;ribonucleotide metabolic process;4.12275701956588e-09!GO:0051169;nuclear transport;4.21732758908066e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.93259002512498e-09!GO:0009150;purine ribonucleotide metabolic process;6.55718758312296e-09!GO:0006163;purine nucleotide metabolic process;6.76541948426478e-09!GO:0008639;small protein conjugating enzyme activity;7.35480023306604e-09!GO:0006366;transcription from RNA polymerase II promoter;1.41509022866344e-08!GO:0004842;ubiquitin-protein ligase activity;1.45506466066895e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.22850860719768e-08!GO:0006164;purine nucleotide biosynthetic process;2.43321823527091e-08!GO:0008565;protein transporter activity;2.4536319107263e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.73387897411836e-08!GO:0019787;small conjugating protein ligase activity;2.85838846278866e-08!GO:0017038;protein import;3.02211706496131e-08!GO:0009260;ribonucleotide biosynthetic process;3.04318083660215e-08!GO:0006464;protein modification process;3.04959163302479e-08!GO:0044431;Golgi apparatus part;3.1488933408615e-08!GO:0016604;nuclear body;3.15482679913968e-08!GO:0005635;nuclear envelope;3.50220313455356e-08!GO:0005694;chromosome;3.90099293599779e-08!GO:0030120;vesicle coat;3.90099293599779e-08!GO:0030662;coated vesicle membrane;3.90099293599779e-08!GO:0006888;ER to Golgi vesicle-mediated transport;4.28012259127382e-08!GO:0031965;nuclear membrane;4.29323498969259e-08!GO:0042254;ribosome biogenesis and assembly;4.56746469128454e-08!GO:0006461;protein complex assembly;4.97848600420724e-08!GO:0009199;ribonucleoside triphosphate metabolic process;5.21538848154951e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.42959213394805e-08!GO:0009144;purine nucleoside triphosphate metabolic process;5.42959213394805e-08!GO:0009056;catabolic process;5.81504776528808e-08!GO:0009141;nucleoside triphosphate metabolic process;5.89116230441623e-08!GO:0003924;GTPase activity;5.94883026582519e-08!GO:0042623;ATPase activity, coupled;7.05425148154286e-08!GO:0015986;ATP synthesis coupled proton transport;7.07270250571843e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.07270250571843e-08!GO:0016887;ATPase activity;9.35467256223037e-08!GO:0051726;regulation of cell cycle;1.06299162496307e-07!GO:0044453;nuclear membrane part;1.1637436597595e-07!GO:0000074;regulation of progression through cell cycle;1.19051434204306e-07!GO:0051276;chromosome organization and biogenesis;1.22207272087905e-07!GO:0048519;negative regulation of biological process;1.25804568618036e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.4761227876965e-07!GO:0022403;cell cycle phase;1.54738253967381e-07!GO:0045333;cellular respiration;1.6378764293566e-07!GO:0005524;ATP binding;1.70683651728468e-07!GO:0009060;aerobic respiration;1.70683651728468e-07!GO:0044427;chromosomal part;1.80177467568206e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.01511547418285e-07!GO:0046034;ATP metabolic process;2.15786118945972e-07!GO:0016881;acid-amino acid ligase activity;2.23806432043643e-07!GO:0030554;adenyl nucleotide binding;2.418044149678e-07!GO:0006260;DNA replication;2.51706533801947e-07!GO:0000087;M phase of mitotic cell cycle;2.52916460040722e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.55857970996051e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.55857970996051e-07!GO:0009719;response to endogenous stimulus;2.55857970996051e-07!GO:0048475;coated membrane;2.57609234269456e-07!GO:0030117;membrane coat;2.57609234269456e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.59767321460124e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.59767321460124e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.61812007094274e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.74849026659766e-07!GO:0005768;endosome;2.8298075470812e-07!GO:0007067;mitosis;2.94191809200595e-07!GO:0051246;regulation of protein metabolic process;3.08073005808897e-07!GO:0032559;adenyl ribonucleotide binding;3.1696770580298e-07!GO:0031324;negative regulation of cellular metabolic process;3.20677538508794e-07!GO:0006323;DNA packaging;4.1389981751009e-07!GO:0005839;proteasome core complex (sensu Eukaryota);4.48657943168433e-07!GO:0042981;regulation of apoptosis;5.0223420414353e-07!GO:0019829;cation-transporting ATPase activity;5.06794285522396e-07!GO:0065004;protein-DNA complex assembly;5.33256389782983e-07!GO:0005773;vacuole;5.66901984098316e-07!GO:0006281;DNA repair;5.75118075535445e-07!GO:0008361;regulation of cell size;6.08928402136469e-07!GO:0043067;regulation of programmed cell death;6.56408453930467e-07!GO:0016607;nuclear speck;7.01618527704738e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.71216075884012e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;8.08321075338237e-07!GO:0016049;cell growth;8.18911408762096e-07!GO:0006754;ATP biosynthetic process;8.8027263631359e-07!GO:0006753;nucleoside phosphate metabolic process;8.8027263631359e-07!GO:0043687;post-translational protein modification;9.15818049148259e-07!GO:0050794;regulation of cellular process;9.20064701747872e-07!GO:0004386;helicase activity;1.68691031932196e-06!GO:0008026;ATP-dependent helicase activity;1.95992182605617e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.96603945749716e-06!GO:0051188;cofactor biosynthetic process;2.20226374203254e-06!GO:0051187;cofactor catabolic process;2.26582401843941e-06!GO:0000139;Golgi membrane;2.32797514161392e-06!GO:0006099;tricarboxylic acid cycle;2.82366489093293e-06!GO:0046356;acetyl-CoA catabolic process;2.82366489093293e-06!GO:0001558;regulation of cell growth;2.82564256752472e-06!GO:0030532;small nuclear ribonucleoprotein complex;3.19488998431897e-06!GO:0006333;chromatin assembly or disassembly;3.24675406174855e-06!GO:0004298;threonine endopeptidase activity;3.4805996098985e-06!GO:0065002;intracellular protein transport across a membrane;3.76411017249529e-06!GO:0003697;single-stranded DNA binding;3.77341367545758e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.06346000136147e-06!GO:0004812;aminoacyl-tRNA ligase activity;4.06346000136147e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.06346000136147e-06!GO:0003714;transcription corepressor activity;4.18002201958631e-06!GO:0051170;nuclear import;4.28752677060525e-06!GO:0009117;nucleotide metabolic process;4.64734854718248e-06!GO:0000323;lytic vacuole;4.66300731497131e-06!GO:0005764;lysosome;4.66300731497131e-06!GO:0045259;proton-transporting ATP synthase complex;4.75501600282395e-06!GO:0043069;negative regulation of programmed cell death;4.99158539429501e-06!GO:0000785;chromatin;5.08373537690388e-06!GO:0006399;tRNA metabolic process;5.08373537690388e-06!GO:0006606;protein import into nucleus;5.15413729723723e-06!GO:0043066;negative regulation of apoptosis;5.55924228823309e-06!GO:0009109;coenzyme catabolic process;5.63091097885129e-06!GO:0051301;cell division;5.79743645926237e-06!GO:0044440;endosomal part;6.25337726320992e-06!GO:0010008;endosome membrane;6.25337726320992e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.35663867622056e-06!GO:0043038;amino acid activation;6.63928766257642e-06!GO:0006418;tRNA aminoacylation for protein translation;6.63928766257642e-06!GO:0043039;tRNA aminoacylation;6.63928766257642e-06!GO:0031252;leading edge;6.6438575060756e-06!GO:0051789;response to protein stimulus;6.74308422351272e-06!GO:0006986;response to unfolded protein;6.74308422351272e-06!GO:0009892;negative regulation of metabolic process;7.220638038719e-06!GO:0006916;anti-apoptosis;7.35747332296543e-06!GO:0005643;nuclear pore;7.73887267389887e-06!GO:0006084;acetyl-CoA metabolic process;8.04385872544891e-06!GO:0006091;generation of precursor metabolites and energy;9.15810727716445e-06!GO:0032446;protein modification by small protein conjugation;1.04203588785192e-05!GO:0016564;transcription repressor activity;1.04275090971438e-05!GO:0006334;nucleosome assembly;1.05771144530703e-05!GO:0043566;structure-specific DNA binding;1.14798521587559e-05!GO:0005798;Golgi-associated vesicle;1.32696026945353e-05!GO:0005667;transcription factor complex;1.42033579742855e-05!GO:0016567;protein ubiquitination;1.42898443926408e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.5875832403768e-05!GO:0006613;cotranslational protein targeting to membrane;1.8112059518552e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.32491652756769e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.33801653238019e-05!GO:0016853;isomerase activity;2.48273455558645e-05!GO:0016481;negative regulation of transcription;2.49001119920029e-05!GO:0000245;spliceosome assembly;2.55513606014293e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.61787805353888e-05!GO:0006364;rRNA processing;2.91522580081304e-05!GO:0031497;chromatin assembly;2.97416574611588e-05!GO:0000151;ubiquitin ligase complex;3.14291979255317e-05!GO:0016023;cytoplasmic membrane-bound vesicle;3.37191746586411e-05!GO:0016787;hydrolase activity;3.4051059375787e-05!GO:0016859;cis-trans isomerase activity;3.57864131131231e-05!GO:0046930;pore complex;3.70154799339561e-05!GO:0007005;mitochondrion organization and biogenesis;3.75654851687709e-05!GO:0016072;rRNA metabolic process;3.93260017306429e-05!GO:0031988;membrane-bound vesicle;4.10240691190827e-05!GO:0005770;late endosome;4.17104703597653e-05!GO:0005762;mitochondrial large ribosomal subunit;4.20250520376361e-05!GO:0000315;organellar large ribosomal subunit;4.20250520376361e-05!GO:0000279;M phase;4.53606272623545e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.53606272623545e-05!GO:0015630;microtubule cytoskeleton;4.56094237680454e-05!GO:0030867;rough endoplasmic reticulum membrane;4.65697793283691e-05!GO:0048522;positive regulation of cellular process;4.73420884272276e-05!GO:0005525;GTP binding;4.79155350854222e-05!GO:0015980;energy derivation by oxidation of organic compounds;6.19370523346755e-05!GO:0050789;regulation of biological process;6.32669872661168e-05!GO:0009108;coenzyme biosynthetic process;6.35245749114541e-05!GO:0005769;early endosome;6.46327786768256e-05!GO:0045786;negative regulation of progression through cell cycle;6.60785716368805e-05!GO:0030133;transport vesicle;7.3422507064423e-05!GO:0006403;RNA localization;7.3422507064423e-05!GO:0045454;cell redox homeostasis;8.11390987607909e-05!GO:0006752;group transfer coenzyme metabolic process;8.25917008308676e-05!GO:0050657;nucleic acid transport;8.33201812971614e-05!GO:0051236;establishment of RNA localization;8.33201812971614e-05!GO:0050658;RNA transport;8.33201812971614e-05!GO:0008654;phospholipid biosynthetic process;9.42815828853402e-05!GO:0033116;ER-Golgi intermediate compartment membrane;9.43741307309545e-05!GO:0003713;transcription coactivator activity;9.49037297012594e-05!GO:0016779;nucleotidyltransferase activity;9.81814603716494e-05!GO:0019843;rRNA binding;0.000109853396506225!GO:0016563;transcription activator activity;0.000113029913371335!GO:0030029;actin filament-based process;0.000148120684836015!GO:0005905;coated pit;0.000199937743751876!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000202433055528009!GO:0044262;cellular carbohydrate metabolic process;0.000220932907675597!GO:0051329;interphase of mitotic cell cycle;0.000250697015397323!GO:0003724;RNA helicase activity;0.000250725907038932!GO:0007010;cytoskeleton organization and biogenesis;0.000252986804186074!GO:0051325;interphase;0.00029168388976435!GO:0043623;cellular protein complex assembly;0.000313562205919481!GO:0032561;guanyl ribonucleotide binding;0.000323663501881329!GO:0019001;guanyl nucleotide binding;0.000323663501881329!GO:0031982;vesicle;0.000326624846732713!GO:0031410;cytoplasmic vesicle;0.000327694605707384!GO:0040008;regulation of growth;0.000339975734453185!GO:0006612;protein targeting to membrane;0.000397026472050686!GO:0006793;phosphorus metabolic process;0.000397026472050686!GO:0006796;phosphate metabolic process;0.000397026472050686!GO:0005813;centrosome;0.000405590504393233!GO:0019867;outer membrane;0.000405590504393233!GO:0016568;chromatin modification;0.000405590504393233!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000415473597739262!GO:0043021;ribonucleoprotein binding;0.000446164625960438!GO:0030663;COPI coated vesicle membrane;0.0004492856380778!GO:0030126;COPI vesicle coat;0.0004492856380778!GO:0005048;signal sequence binding;0.000470175287965798!GO:0005885;Arp2/3 protein complex;0.000482410532665222!GO:0007243;protein kinase cascade;0.000486044145816667!GO:0031968;organelle outer membrane;0.00054744867310387!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000572476420878038!GO:0008250;oligosaccharyl transferase complex;0.0005837895397599!GO:0004576;oligosaccharyl transferase activity;0.000642909130599895!GO:0016310;phosphorylation;0.000686184463722599!GO:0016740;transferase activity;0.000707049812337931!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000775108642958105!GO:0005815;microtubule organizing center;0.000895260792376318!GO:0051427;hormone receptor binding;0.000961605443385555!GO:0005791;rough endoplasmic reticulum;0.000963399914158134!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000972369172574686!GO:0008092;cytoskeletal protein binding;0.000987733606522746!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00101627531636145!GO:0051920;peroxiredoxin activity;0.00107756568613952!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00110864832981235!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00116477905028875!GO:0005741;mitochondrial outer membrane;0.00116559477418775!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0011691818139218!GO:0030137;COPI-coated vesicle;0.00117992771140723!GO:0051028;mRNA transport;0.00136939936077777!GO:0018196;peptidyl-asparagine modification;0.00136939936077777!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00136939936077777!GO:0006891;intra-Golgi vesicle-mediated transport;0.00153295917906659!GO:0048518;positive regulation of biological process;0.00153950274030047!GO:0035257;nuclear hormone receptor binding;0.00179460917796873!GO:0000314;organellar small ribosomal subunit;0.0018222164128788!GO:0005763;mitochondrial small ribosomal subunit;0.0018222164128788!GO:0016044;membrane organization and biogenesis;0.00188566087826193!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00203296414830816!GO:0043488;regulation of mRNA stability;0.00213713550309407!GO:0043487;regulation of RNA stability;0.00213713550309407!GO:0030132;clathrin coat of coated pit;0.00219884472184265!GO:0019899;enzyme binding;0.00228685195246145!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00243439683021916!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00243439683021916!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00243439683021916!GO:0003899;DNA-directed RNA polymerase activity;0.0025439017503232!GO:0009165;nucleotide biosynthetic process;0.00260554238473428!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00278790259882927!GO:0045892;negative regulation of transcription, DNA-dependent;0.0028865539959708!GO:0008186;RNA-dependent ATPase activity;0.00290095042050401!GO:0030027;lamellipodium;0.00292661044942059!GO:0030658;transport vesicle membrane;0.00295301340408708!GO:0003729;mRNA binding;0.00308243381856413!GO:0007050;cell cycle arrest;0.00313402545310673!GO:0046474;glycerophospholipid biosynthetic process;0.00313922189337074!GO:0006950;response to stress;0.00317498864960972!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00328059685241836!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00354986008042667!GO:0048500;signal recognition particle;0.00357455866063546!GO:0005819;spindle;0.00359710105299846!GO:0051252;regulation of RNA metabolic process;0.00377703247120412!GO:0016197;endosome transport;0.00393250621845348!GO:0006509;membrane protein ectodomain proteolysis;0.00393250621845348!GO:0033619;membrane protein proteolysis;0.00393250621845348!GO:0043284;biopolymer biosynthetic process;0.00396739238746181!GO:0043681;protein import into mitochondrion;0.00399973797005281!GO:0044420;extracellular matrix part;0.00422917305712265!GO:0031418;L-ascorbic acid binding;0.00461169989930689!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00474501477667255!GO:0015399;primary active transmembrane transporter activity;0.00474501477667255!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00496708695006269!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00509299483749874!GO:0030127;COPII vesicle coat;0.00509933556292!GO:0012507;ER to Golgi transport vesicle membrane;0.00509933556292!GO:0004177;aminopeptidase activity;0.00538133541541654!GO:0030118;clathrin coat;0.00563050269484495!GO:0005581;collagen;0.00563050269484495!GO:0006414;translational elongation;0.00567516072214011!GO:0003690;double-stranded DNA binding;0.00567516072214011!GO:0007040;lysosome organization and biogenesis;0.00574907456720022!GO:0008154;actin polymerization and/or depolymerization;0.00587238428915091!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00587238428915091!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00587238428915091!GO:0030134;ER to Golgi transport vesicle;0.00603156233826338!GO:0001726;ruffle;0.00603156233826338!GO:0031072;heat shock protein binding;0.00603156233826338!GO:0031543;peptidyl-proline dioxygenase activity;0.00603156233826338!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00615266316098421!GO:0005520;insulin-like growth factor binding;0.00618883204016062!GO:0022890;inorganic cation transmembrane transporter activity;0.00658729855608574!GO:0019798;procollagen-proline dioxygenase activity;0.00664263609870922!GO:0051168;nuclear export;0.00664263609870922!GO:0000786;nucleosome;0.00665030738564174!GO:0008139;nuclear localization sequence binding;0.00667378395916234!GO:0016363;nuclear matrix;0.00681741592864041!GO:0006626;protein targeting to mitochondrion;0.00684157851161012!GO:0006402;mRNA catabolic process;0.00712479696680452!GO:0030041;actin filament polymerization;0.00713378330116062!GO:0004004;ATP-dependent RNA helicase activity;0.00718417699465374!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00753636358698494!GO:0015002;heme-copper terminal oxidase activity;0.00753636358698494!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00753636358698494!GO:0004129;cytochrome-c oxidase activity;0.00753636358698494!GO:0006261;DNA-dependent DNA replication;0.00770742411113413!GO:0048487;beta-tubulin binding;0.00802656772459344!GO:0048468;cell development;0.00805927273011887!GO:0030660;Golgi-associated vesicle membrane;0.00818540169715326!GO:0007033;vacuole organization and biogenesis;0.00825697391588797!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00833704647776803!GO:0045047;protein targeting to ER;0.00833704647776803!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00861633432149689!GO:0046467;membrane lipid biosynthetic process;0.0087365048043615!GO:0019222;regulation of metabolic process;0.00893268933648297!GO:0046489;phosphoinositide biosynthetic process;0.00903599640560813!GO:0000059;protein import into nucleus, docking;0.00924473585306049!GO:0065007;biological regulation;0.00924473585306049!GO:0008180;signalosome;0.009353654294913!GO:0007264;small GTPase mediated signal transduction;0.00940077295719524!GO:0065009;regulation of a molecular function;0.00968878848960427!GO:0001527;microfibril;0.00968878848960427!GO:0015992;proton transport;0.00989223085669315!GO:0030176;integral to endoplasmic reticulum membrane;0.00989223085669315!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00991114358538124!GO:0017166;vinculin binding;0.00997009297799355!GO:0046483;heterocycle metabolic process;0.0101347241984703!GO:0006383;transcription from RNA polymerase III promoter;0.0106885966239925!GO:0048471;perinuclear region of cytoplasm;0.0107329437908571!GO:0051101;regulation of DNA binding;0.0108695486538791!GO:0009967;positive regulation of signal transduction;0.0108915092103991!GO:0006595;polyamine metabolic process;0.0109333273598574!GO:0006892;post-Golgi vesicle-mediated transport;0.0110908362075112!GO:0051128;regulation of cellular component organization and biogenesis;0.0111353066552435!GO:0043065;positive regulation of apoptosis;0.0112769154404054!GO:0006818;hydrogen transport;0.0112941491764163!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0113700721582817!GO:0015631;tubulin binding;0.0114236021426163!GO:0005869;dynactin complex;0.0117876500339463!GO:0050662;coenzyme binding;0.0120070412690492!GO:0005583;fibrillar collagen;0.0120548159326149!GO:0005586;collagen type III;0.0121129462017324!GO:0006740;NADPH regeneration;0.0127451738705157!GO:0006098;pentose-phosphate shunt;0.0127451738705157!GO:0031901;early endosome membrane;0.0128910391963868!GO:0005657;replication fork;0.0133236081629439!GO:0030880;RNA polymerase complex;0.0134650455878045!GO:0009112;nucleobase metabolic process;0.0135333879061593!GO:0043068;positive regulation of programmed cell death;0.0136580958303983!GO:0030659;cytoplasmic vesicle membrane;0.0137750898716215!GO:0006118;electron transport;0.0137949642414733!GO:0008312;7S RNA binding;0.0137949642414733!GO:0003746;translation elongation factor activity;0.0140440334818052!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0143109379042272!GO:0051098;regulation of binding;0.0145894058293539!GO:0007006;mitochondrial membrane organization and biogenesis;0.0148260206217384!GO:0007051;spindle organization and biogenesis;0.0149051859706177!GO:0005862;muscle thin filament tropomyosin;0.0150260226514238!GO:0006354;RNA elongation;0.015443713307701!GO:0006401;RNA catabolic process;0.0155245651854247!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0155856814385222!GO:0045893;positive regulation of transcription, DNA-dependent;0.0156616429704291!GO:0008632;apoptotic program;0.0157883013858346!GO:0045941;positive regulation of transcription;0.0161651730806356!GO:0000082;G1/S transition of mitotic cell cycle;0.0162038421034775!GO:0031529;ruffle organization and biogenesis;0.0165863107355787!GO:0030032;lamellipodium biogenesis;0.0170674954305431!GO:0003756;protein disulfide isomerase activity;0.0170814461173255!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0170814461173255!GO:0030521;androgen receptor signaling pathway;0.0171855587378343!GO:0031902;late endosome membrane;0.0174745796257264!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0175162204632761!GO:0016126;sterol biosynthetic process;0.0181932080128269!GO:0035035;histone acetyltransferase binding;0.0181932080128269!GO:0008610;lipid biosynthetic process;0.0189413716162001!GO:0030125;clathrin vesicle coat;0.0190795807160861!GO:0030665;clathrin coated vesicle membrane;0.0190795807160861!GO:0051059;NF-kappaB binding;0.019156305018781!GO:0006778;porphyrin metabolic process;0.0203758975725106!GO:0033013;tetrapyrrole metabolic process;0.0203758975725106!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0205159629240638!GO:0006897;endocytosis;0.0214651481804533!GO:0010324;membrane invagination;0.0214651481804533!GO:0008283;cell proliferation;0.0215754085458863!GO:0045045;secretory pathway;0.021614832528994!GO:0003711;transcription elongation regulator activity;0.0216674329269278!GO:0030119;AP-type membrane coat adaptor complex;0.0216674329269278!GO:0005637;nuclear inner membrane;0.0220078982584365!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0221207165686653!GO:0050811;GABA receptor binding;0.0223743647816679!GO:0005684;U2-dependent spliceosome;0.0228086305269008!GO:0043022;ribosome binding;0.0228340302603757!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0228416742616389!GO:0033043;regulation of organelle organization and biogenesis;0.0228416742616389!GO:0006979;response to oxidative stress;0.0230187462200513!GO:0043492;ATPase activity, coupled to movement of substances;0.0230578342932678!GO:0000075;cell cycle checkpoint;0.0230578342932678!GO:0003678;DNA helicase activity;0.023126560270952!GO:0022408;negative regulation of cell-cell adhesion;0.0247976857069084!GO:0003684;damaged DNA binding;0.0249173160441062!GO:0051087;chaperone binding;0.0253509551663876!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0256627502365175!GO:0007160;cell-matrix adhesion;0.0259860466674226!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0261209638757526!GO:0000428;DNA-directed RNA polymerase complex;0.0261209638757526!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0262576995637769!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0262576995637769!GO:0016272;prefoldin complex;0.0263431608838344!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0265043497790897!GO:0031625;ubiquitin protein ligase binding;0.0266519385315475!GO:0031589;cell-substrate adhesion;0.0268962119248531!GO:0006650;glycerophospholipid metabolic process;0.0272077848145598!GO:0051287;NAD binding;0.0273045710658276!GO:0030031;cell projection biogenesis;0.0276579300799389!GO:0031124;mRNA 3'-end processing;0.0285397821087544!GO:0019206;nucleoside kinase activity;0.0285764759479144!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0286687697880327!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0288935005041895!GO:0042802;identical protein binding;0.0289998070523074!GO:0008629;induction of apoptosis by intracellular signals;0.0291221292848998!GO:0003923;GPI-anchor transamidase activity;0.0291628271477484!GO:0016255;attachment of GPI anchor to protein;0.0291628271477484!GO:0042765;GPI-anchor transamidase complex;0.0291628271477484!GO:0004228;gelatinase A activity;0.0291950246082429!GO:0001955;blood vessel maturation;0.0291950246082429!GO:0000339;RNA cap binding;0.0293860222401727!GO:0006352;transcription initiation;0.0297150251802221!GO:0030518;steroid hormone receptor signaling pathway;0.029741746558894!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0300553217399822!GO:0042168;heme metabolic process;0.0306882802551469!GO:0051540;metal cluster binding;0.0306894257612547!GO:0051536;iron-sulfur cluster binding;0.0306894257612547!GO:0006839;mitochondrial transport;0.0315395326510151!GO:0005832;chaperonin-containing T-complex;0.0315929802695276!GO:0045792;negative regulation of cell size;0.0320053764209107!GO:0004364;glutathione transferase activity;0.0324380746174248!GO:0008243;plasminogen activator activity;0.0324386822146799!GO:0030833;regulation of actin filament polymerization;0.0328939154717733!GO:0008047;enzyme activator activity;0.033255909259188!GO:0051052;regulation of DNA metabolic process;0.033255909259188!GO:0009225;nucleotide-sugar metabolic process;0.0336614507835439!GO:0005774;vacuolar membrane;0.0336996232283534!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0343177885789383!GO:0043433;negative regulation of transcription factor activity;0.0344432393943423!GO:0001953;negative regulation of cell-matrix adhesion;0.0350718513273965!GO:0030145;manganese ion binding;0.0354450228828527!GO:0000792;heterochromatin;0.0359481097618356!GO:0022415;viral reproductive process;0.0359482441069378!GO:0048144;fibroblast proliferation;0.0360775125275555!GO:0048145;regulation of fibroblast proliferation;0.0360775125275555!GO:0016408;C-acyltransferase activity;0.0363553356149584!GO:0030308;negative regulation of cell growth;0.0364316623063678!GO:0032984;macromolecular complex disassembly;0.036713990560844!GO:0007034;vacuolar transport;0.0367987544334361!GO:0032508;DNA duplex unwinding;0.0369674020843062!GO:0032392;DNA geometric change;0.0369674020843062!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0373046437360813!GO:0005801;cis-Golgi network;0.0374657234263727!GO:0046426;negative regulation of JAK-STAT cascade;0.038593722913749!GO:0044433;cytoplasmic vesicle part;0.0386090579798893!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0386958185418811!GO:0000209;protein polyubiquitination;0.0394306016988987!GO:0032507;maintenance of cellular protein localization;0.0394306016988987!GO:0030131;clathrin adaptor complex;0.0396986962143528!GO:0008383;manganese superoxide dismutase activity;0.0402001325078248!GO:0001315;age-dependent response to reactive oxygen species;0.0402001325078248!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0407471663918488!GO:0006268;DNA unwinding during replication;0.0411083891422938!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0411968179501638!GO:0006497;protein amino acid lipidation;0.0414337418218376!GO:0006790;sulfur metabolic process;0.0419088689686331!GO:0003779;actin binding;0.0420250988247114!GO:0033559;unsaturated fatty acid metabolic process;0.0420955773341768!GO:0006636;unsaturated fatty acid biosynthetic process;0.0420955773341768!GO:0005874;microtubule;0.0421457100516603!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0422208087368093!GO:0045936;negative regulation of phosphate metabolic process;0.0422362665309092!GO:0016584;nucleosome positioning;0.042811233600121!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0434166906633421!GO:0004784;superoxide dismutase activity;0.0434166906633421!GO:0051235;maintenance of localization;0.0437582242886355!GO:0035258;steroid hormone receptor binding;0.0438560754857181!GO:0031371;ubiquitin conjugating enzyme complex;0.0440406282798745!GO:0005507;copper ion binding;0.0443469684283896!GO:0051539;4 iron, 4 sulfur cluster binding;0.0443469684283896!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0451119131633649!GO:0006506;GPI anchor biosynthetic process;0.0453425915319479!GO:0008094;DNA-dependent ATPase activity;0.0455513212784656!GO:0004287;prolyl oligopeptidase activity;0.0455513212784656!GO:0006417;regulation of translation;0.04557644968689!GO:0009116;nucleoside metabolic process;0.0458689509356155!GO:0030984;kininogen binding;0.0464586392883051!GO:0004213;cathepsin B activity;0.0464586392883051!GO:0003682;chromatin binding;0.0469281643808656!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0471750713536459!GO:0000902;cell morphogenesis;0.0475578204306896!GO:0032989;cellular structure morphogenesis;0.0475578204306896!GO:0031272;regulation of pseudopodium formation;0.047663218493071!GO:0031269;pseudopodium formation;0.047663218493071!GO:0031344;regulation of cell projection organization and biogenesis;0.047663218493071!GO:0031268;pseudopodium organization and biogenesis;0.047663218493071!GO:0031346;positive regulation of cell projection organization and biogenesis;0.047663218493071!GO:0031274;positive regulation of pseudopodium formation;0.047663218493071!GO:0005784;translocon complex;0.0478343061714964!GO:0006082;organic acid metabolic process;0.0487855440255063!GO:0006289;nucleotide-excision repair;0.0490662552970567!GO:0009119;ribonucleoside metabolic process;0.0490662552970567!GO:0019752;carboxylic acid metabolic process;0.0490662552970567!GO:0004720;protein-lysine 6-oxidase activity;0.049248676858052!GO:0008484;sulfuric ester hydrolase activity;0.0495688303794067 | |||
|sample_id=11763 | |sample_id=11763 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=tendon | |sample_tissue=tendon | ||
|top_motifs=UFEwm:2.95529478579;ALX4:2.75550724581;NKX2-2,8:2.53214992808;EVI1:2.45298982908;TAL1_TCF{3,4,12}:2.39713680922;HMGA1,2:2.28822733837;PAX1,9:2.17303600129;ESR1:2.1303696505;EN1,2:2.07138233052;HES1:1.84206049341;MYBL2:1.81027102434;ZNF238:1.79375227106;NR6A1:1.73292876389;GLI1..3:1.63657061507;XBP1:1.62268909658;RXRA_VDR{dimer}:1.52852089282;GZF1:1.49272566581;RXR{A,B,G}:1.47118943063;FOXL1:1.44050559278;HOX{A4,D4}:1.28575751689;NKX3-1:1.27980345962;GCM1,2:1.25871389061;TFCP2:1.24751163861;KLF4:1.21227773623;ATF6:1.19990886225;EBF1:1.18757550029;CDC5L:1.18192799756;NANOG{mouse}:1.16827180831;DBP:1.16827178617;ZNF423:1.15728423013;GFI1B:1.04877539054;NR3C1:0.971073429831;SPZ1:0.963954172314;HOX{A5,B5}:0.939253584615;HAND1,2:0.938046044608;GATA4:0.931935934757;TP53:0.930612074574;NFATC1..3:0.892742512238;TFAP4:0.885654271457;NKX3-2:0.836185815423;GTF2I:0.823488364284;AIRE:0.819710522277;ARID5B:0.807897305548;SMAD1..7,9:0.797705599743;TEAD1:0.786918779101;ZIC1..3:0.786716196149;PAX4:0.782690047611;MTF1:0.777880447019;ZNF384:0.771821422021;NR1H4:0.742185004754;GTF2A1,2:0.73759137932;FOXO1,3,4:0.73527335287;HMX1:0.734316409137;TFAP2{A,C}:0.700805904995;NFE2L1:0.675114187683;TEF:0.655863118375;HSF1,2:0.60875704639;YY1:0.59701860011;POU3F1..4:0.588413151391;MAFB:0.588082942966;PAX5:0.538538078631;RREB1:0.512249137747;MZF1:0.502201580459;PATZ1:0.49245330635;ZBTB6:0.480056027864;STAT2,4,6:0.477006888888;MTE{core}:0.4757786656;TBP:0.458397470079;MYB:0.456149906658;IRF1,2:0.44849940339;SRF:0.441846602074;TLX1..3_NFIC{dimer}:0.439386735596;PRDM1:0.400389099165;XCPE1{core}:0.378157218047;LHX3,4:0.368144932692;IKZF1:0.343697935299;CDX1,2,4:0.321723452355;NFE2L2:0.312116901124;HIC1:0.282617332623;PAX8:0.255143124445;SOX17:0.21445416935;LMO2:0.19251458348;MAZ:0.175793426518;HLF:0.173200837;ZNF148:0.168665873468;TFAP2B:0.165550914663;ZBTB16:0.157434139342;PPARG:0.113404666526;REST:0.108718186038;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.105465854018;POU6F1:0.0981819012594;FOXD3:0.0664781520215;EP300:0.00820250155585;AR:-0.0159922627452;VSX1,2:-0.0220470078285;MYFfamily:-0.0254629613012;HOX{A6,A7,B6,B7}:-0.0321999431482;HNF1A:-0.0490771001502;GFI1:-0.0618377171411;DMAP1_NCOR{1,2}_SMARC:-0.0677704528432;NHLH1,2:-0.0795438923995;POU5F1:-0.0993539813279;IRF7:-0.106674136773;BACH2:-0.111542485088;HBP1_HMGB_SSRP1_UBTF:-0.13364779149;RUNX1..3:-0.138985530804;TFDP1:-0.15108976255;TOPORS:-0.172826336341;ZNF143:-0.227159027079;BPTF:-0.242173017641;E2F1..5:-0.25103271045;EGR1..3:-0.25157256502;HOXA9_MEIS1:-0.271259109552;FOS_FOS{B,L1}_JUN{B,D}:-0.297768123586;FOXM1:-0.298266630469;NKX2-3_NKX2-5:-0.30864996858;NFIX:-0.324426606593;MED-1{core}:-0.325865352121;STAT1,3:-0.329261710998;NFKB1_REL_RELA:-0.337988879958;HNF4A_NR2F1,2:-0.34167631142;TBX4,5:-0.34519282915;PAX3,7:-0.353996658699;NR5A1,2:-0.366403476823;ONECUT1,2:-0.376891696794;ZFP161:-0.377688433601;MEF2{A,B,C,D}:-0.394891487933;bHLH_family:-0.396722257823;NRF1:-0.401269216148;FOXP3:-0.420033748176;PITX1..3:-0.435926965491;LEF1_TCF7_TCF7L1,2:-0.460929062227;SP1:-0.465577515066;NKX2-1,4:-0.499563363465;SNAI1..3:-0.525428940661;RFX1:-0.536216547142;FOSL2:-0.608267026416;FOX{D1,D2}:-0.631106786897;CEBPA,B_DDIT3:-0.657552241118;STAT5{A,B}:-0.671093870174;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.672828338656;FOXA2:-0.681340669687;BREu{core}:-0.685890534083;HIF1A:-0.690636137352;NKX6-1,2:-0.702689726499;NFIL3:-0.70335311354;IKZF2:-0.705826806088;NFE2:-0.72597200736;SPI1:-0.7303298163;SPIB:-0.741199901337;JUN:-0.781292402635;FOXN1:-0.784056334841;CREB1:-0.792010517223;ELK1,4_GABP{A,B1}:-0.79406426955;SOX5:-0.796939162409;PBX1:-0.801825557564;TLX2:-0.806912131298;AHR_ARNT_ARNT2:-0.818165522782;SOX{8,9,10}:-0.835988280985;ETS1,2:-0.850940137175;PAX2:-0.861666709867;SOX2:-0.864725894299;FOXP1:-0.920965237883;ESRRA:-0.940709974274;ADNP_IRX_SIX_ZHX:-0.955750539365;RFX2..5_RFXANK_RFXAP:-0.961653147071;SREBF1,2:-0.987396739855;ATF4:-0.993643611555;NFY{A,B,C}:-1.02194443297;POU1F1:-1.0393968869;TGIF1:-1.10874675304;POU2F1..3:-1.12233792029;ZEB1:-1.14833963058;FOX{I1,J2}:-1.17894569113;ELF1,2,4:-1.18820710531;PRRX1,2:-1.20954320863;PAX6:-1.21505688006;ATF5_CREB3:-1.22278191604;OCT4_SOX2{dimer}:-1.23946112031;ALX1:-1.28345790781;GATA6:-1.31349922375;RBPJ:-1.32147132114;CUX2:-1.32605460367;T:-1.40576397651;PDX1:-1.52974574447;FOX{F1,F2,J1}:-1.56696631607;ATF2:-1.5751939868;CRX:-1.576535295;MYOD1:-1.5868544728;NANOG:-1.877266695;RORA:-1.88838939154;FOXQ1:-2.01061907811 | |top_motifs=UFEwm:2.95529478579;ALX4:2.75550724581;NKX2-2,8:2.53214992808;EVI1:2.45298982908;TAL1_TCF{3,4,12}:2.39713680922;HMGA1,2:2.28822733837;PAX1,9:2.17303600129;ESR1:2.1303696505;EN1,2:2.07138233052;HES1:1.84206049341;MYBL2:1.81027102434;ZNF238:1.79375227106;NR6A1:1.73292876389;GLI1..3:1.63657061507;XBP1:1.62268909658;RXRA_VDR{dimer}:1.52852089282;GZF1:1.49272566581;RXR{A,B,G}:1.47118943063;FOXL1:1.44050559278;HOX{A4,D4}:1.28575751689;NKX3-1:1.27980345962;GCM1,2:1.25871389061;TFCP2:1.24751163861;KLF4:1.21227773623;ATF6:1.19990886225;EBF1:1.18757550029;CDC5L:1.18192799756;NANOG{mouse}:1.16827180831;DBP:1.16827178617;ZNF423:1.15728423013;GFI1B:1.04877539054;NR3C1:0.971073429831;SPZ1:0.963954172314;HOX{A5,B5}:0.939253584615;HAND1,2:0.938046044608;GATA4:0.931935934757;TP53:0.930612074574;NFATC1..3:0.892742512238;TFAP4:0.885654271457;NKX3-2:0.836185815423;GTF2I:0.823488364284;AIRE:0.819710522277;ARID5B:0.807897305548;SMAD1..7,9:0.797705599743;TEAD1:0.786918779101;ZIC1..3:0.786716196149;PAX4:0.782690047611;MTF1:0.777880447019;ZNF384:0.771821422021;NR1H4:0.742185004754;GTF2A1,2:0.73759137932;FOXO1,3,4:0.73527335287;HMX1:0.734316409137;TFAP2{A,C}:0.700805904995;NFE2L1:0.675114187683;TEF:0.655863118375;HSF1,2:0.60875704639;YY1:0.59701860011;POU3F1..4:0.588413151391;MAFB:0.588082942966;PAX5:0.538538078631;RREB1:0.512249137747;MZF1:0.502201580459;PATZ1:0.49245330635;ZBTB6:0.480056027864;STAT2,4,6:0.477006888888;MTE{core}:0.4757786656;TBP:0.458397470079;MYB:0.456149906658;IRF1,2:0.44849940339;SRF:0.441846602074;TLX1..3_NFIC{dimer}:0.439386735596;PRDM1:0.400389099165;XCPE1{core}:0.378157218047;LHX3,4:0.368144932692;IKZF1:0.343697935299;CDX1,2,4:0.321723452355;NFE2L2:0.312116901124;HIC1:0.282617332623;PAX8:0.255143124445;SOX17:0.21445416935;LMO2:0.19251458348;MAZ:0.175793426518;HLF:0.173200837;ZNF148:0.168665873468;TFAP2B:0.165550914663;ZBTB16:0.157434139342;PPARG:0.113404666526;REST:0.108718186038;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.105465854018;POU6F1:0.0981819012594;FOXD3:0.0664781520215;EP300:0.00820250155585;AR:-0.0159922627452;VSX1,2:-0.0220470078285;MYFfamily:-0.0254629613012;HOX{A6,A7,B6,B7}:-0.0321999431482;HNF1A:-0.0490771001502;GFI1:-0.0618377171411;DMAP1_NCOR{1,2}_SMARC:-0.0677704528432;NHLH1,2:-0.0795438923995;POU5F1:-0.0993539813279;IRF7:-0.106674136773;BACH2:-0.111542485088;HBP1_HMGB_SSRP1_UBTF:-0.13364779149;RUNX1..3:-0.138985530804;TFDP1:-0.15108976255;TOPORS:-0.172826336341;ZNF143:-0.227159027079;BPTF:-0.242173017641;E2F1..5:-0.25103271045;EGR1..3:-0.25157256502;HOXA9_MEIS1:-0.271259109552;FOS_FOS{B,L1}_JUN{B,D}:-0.297768123586;FOXM1:-0.298266630469;NKX2-3_NKX2-5:-0.30864996858;NFIX:-0.324426606593;MED-1{core}:-0.325865352121;STAT1,3:-0.329261710998;NFKB1_REL_RELA:-0.337988879958;HNF4A_NR2F1,2:-0.34167631142;TBX4,5:-0.34519282915;PAX3,7:-0.353996658699;NR5A1,2:-0.366403476823;ONECUT1,2:-0.376891696794;ZFP161:-0.377688433601;MEF2{A,B,C,D}:-0.394891487933;bHLH_family:-0.396722257823;NRF1:-0.401269216148;FOXP3:-0.420033748176;PITX1..3:-0.435926965491;LEF1_TCF7_TCF7L1,2:-0.460929062227;SP1:-0.465577515066;NKX2-1,4:-0.499563363465;SNAI1..3:-0.525428940661;RFX1:-0.536216547142;FOSL2:-0.608267026416;FOX{D1,D2}:-0.631106786897;CEBPA,B_DDIT3:-0.657552241118;STAT5{A,B}:-0.671093870174;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.672828338656;FOXA2:-0.681340669687;BREu{core}:-0.685890534083;HIF1A:-0.690636137352;NKX6-1,2:-0.702689726499;NFIL3:-0.70335311354;IKZF2:-0.705826806088;NFE2:-0.72597200736;SPI1:-0.7303298163;SPIB:-0.741199901337;JUN:-0.781292402635;FOXN1:-0.784056334841;CREB1:-0.792010517223;ELK1,4_GABP{A,B1}:-0.79406426955;SOX5:-0.796939162409;PBX1:-0.801825557564;TLX2:-0.806912131298;AHR_ARNT_ARNT2:-0.818165522782;SOX{8,9,10}:-0.835988280985;ETS1,2:-0.850940137175;PAX2:-0.861666709867;SOX2:-0.864725894299;FOXP1:-0.920965237883;ESRRA:-0.940709974274;ADNP_IRX_SIX_ZHX:-0.955750539365;RFX2..5_RFXANK_RFXAP:-0.961653147071;SREBF1,2:-0.987396739855;ATF4:-0.993643611555;NFY{A,B,C}:-1.02194443297;POU1F1:-1.0393968869;TGIF1:-1.10874675304;POU2F1..3:-1.12233792029;ZEB1:-1.14833963058;FOX{I1,J2}:-1.17894569113;ELF1,2,4:-1.18820710531;PRRX1,2:-1.20954320863;PAX6:-1.21505688006;ATF5_CREB3:-1.22278191604;OCT4_SOX2{dimer}:-1.23946112031;ALX1:-1.28345790781;GATA6:-1.31349922375;RBPJ:-1.32147132114;CUX2:-1.32605460367;T:-1.40576397651;PDX1:-1.52974574447;FOX{F1,F2,J1}:-1.56696631607;ATF2:-1.5751939868;CRX:-1.576535295;MYOD1:-1.5868544728;NANOG:-1.877266695;RORA:-1.88838939154;FOXQ1:-2.01061907811 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11763-123H8;search_select_hide=table117:FF:11763-123H8 | |||
}} | }} | ||
Latest revision as of 18:18, 4 June 2020
| Name: | tenocyte, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12639 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12639
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12639
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.424 |
| 10 | 10 | 0.526 |
| 100 | 100 | 0.55 |
| 101 | 101 | 0.306 |
| 102 | 102 | 0.237 |
| 103 | 103 | 0.0777 |
| 104 | 104 | 0.804 |
| 105 | 105 | 0.114 |
| 106 | 106 | 0.225 |
| 107 | 107 | 0.0316 |
| 108 | 108 | 0.301 |
| 109 | 109 | 0.412 |
| 11 | 11 | 0.271 |
| 110 | 110 | 0.23 |
| 111 | 111 | 0.697 |
| 112 | 112 | 0.553 |
| 113 | 113 | 0.0174 |
| 114 | 114 | 0.188 |
| 115 | 115 | 0.0339 |
| 116 | 116 | 0.0586 |
| 117 | 117 | 0.985 |
| 118 | 118 | 0.932 |
| 119 | 119 | 0.626 |
| 12 | 12 | 0.235 |
| 120 | 120 | 0.652 |
| 121 | 121 | 0.48 |
| 122 | 122 | 0.0219 |
| 123 | 123 | 0.0165 |
| 124 | 124 | 0.718 |
| 125 | 125 | 0.686 |
| 126 | 126 | 0.864 |
| 127 | 127 | 0.822 |
| 128 | 128 | 0.0797 |
| 129 | 129 | 0.611 |
| 13 | 13 | 0.639 |
| 130 | 130 | 0.536 |
| 131 | 131 | 0.79 |
| 132 | 132 | 0.236 |
| 133 | 133 | 0.142 |
| 134 | 134 | 0.635 |
| 135 | 135 | 0.504 |
| 136 | 136 | 0.759 |
| 137 | 137 | 0.599 |
| 138 | 138 | 0.744 |
| 139 | 139 | 0.636 |
| 14 | 14 | 0.509 |
| 140 | 140 | 0.725 |
| 141 | 141 | 0.46 |
| 142 | 142 | 0.779 |
| 143 | 143 | 0.661 |
| 144 | 144 | 0.29 |
| 145 | 145 | 0.754 |
| 146 | 146 | 0.987 |
| 147 | 147 | 0.297 |
| 148 | 148 | 0.808 |
| 149 | 149 | 0.0169 |
| 15 | 15 | 0.786 |
| 150 | 150 | 0.215 |
| 151 | 151 | 0.486 |
| 152 | 152 | 0.132 |
| 153 | 153 | 0.986 |
| 154 | 154 | 0.846 |
| 155 | 155 | 0.2 |
| 156 | 156 | 0.532 |
| 157 | 157 | 0.349 |
| 158 | 158 | 0.0123 |
| 159 | 159 | 0.628 |
| 16 | 16 | 0.00627 |
| 160 | 160 | 0.351 |
| 161 | 161 | 0.938 |
| 162 | 162 | 0.245 |
| 163 | 163 | 0.871 |
| 164 | 164 | 0.142 |
| 165 | 165 | 0.841 |
| 166 | 166 | 0.0452 |
| 167 | 167 | 0.454 |
| 168 | 168 | 0.649 |
| 169 | 169 | 0.019 |
| 17 | 17 | 0.351 |
| 18 | 18 | 0.361 |
| 19 | 19 | 0.00191 |
| 2 | 2 | 0.2 |
| 20 | 20 | 0.333 |
| 21 | 21 | 0.0379 |
| 22 | 22 | 0.273 |
| 23 | 23 | 0.155 |
| 24 | 24 | 0.329 |
| 25 | 25 | 0.474 |
| 26 | 26 | 0.217 |
| 27 | 27 | 0.355 |
| 28 | 28 | 0.238 |
| 29 | 29 | 0.248 |
| 3 | 3 | 0.427 |
| 30 | 30 | 0.434 |
| 31 | 31 | 0.443 |
| 32 | 32 | 5.53423e-20 |
| 33 | 33 | 0.884 |
| 34 | 34 | 0.584 |
| 35 | 35 | 0.833 |
| 36 | 36 | 0.05 |
| 37 | 37 | 0.0973 |
| 38 | 38 | 0.912 |
| 39 | 39 | 0.268 |
| 4 | 4 | 0.833 |
| 40 | 40 | 0.229 |
| 41 | 41 | 0.282 |
| 42 | 42 | 0.75 |
| 43 | 43 | 0.426 |
| 44 | 44 | 0.067 |
| 45 | 45 | 0.733 |
| 46 | 46 | 0.161 |
| 47 | 47 | 0.912 |
| 48 | 48 | 0.79 |
| 49 | 49 | 0.962 |
| 5 | 5 | 0.996 |
| 50 | 50 | 0.532 |
| 51 | 51 | 0.642 |
| 52 | 52 | 0.583 |
| 53 | 53 | 0.191 |
| 54 | 54 | 0.651 |
| 55 | 55 | 0.423 |
| 56 | 56 | 0.791 |
| 57 | 57 | 0.97 |
| 58 | 58 | 0.45 |
| 59 | 59 | 0.0107 |
| 6 | 6 | 0.31 |
| 60 | 60 | 0.6 |
| 61 | 61 | 0.789 |
| 62 | 62 | 0.824 |
| 63 | 63 | 0.196 |
| 64 | 64 | 0.785 |
| 65 | 65 | 0.327 |
| 66 | 66 | 0.229 |
| 67 | 67 | 0.852 |
| 68 | 68 | 0.395 |
| 69 | 69 | 0.515 |
| 7 | 7 | 0.495 |
| 70 | 70 | 0.32 |
| 71 | 71 | 0.389 |
| 72 | 72 | 0.799 |
| 73 | 73 | 0.111 |
| 74 | 74 | 0.246 |
| 75 | 75 | 0.849 |
| 76 | 76 | 0.966 |
| 77 | 77 | 0.0389 |
| 78 | 78 | 0.544 |
| 79 | 79 | 5.70064e-5 |
| 8 | 8 | 0.0859 |
| 80 | 80 | 0.0945 |
| 81 | 81 | 0.391 |
| 82 | 82 | 0.433 |
| 83 | 83 | 0.298 |
| 84 | 84 | 0.311 |
| 85 | 85 | 0.258 |
| 86 | 86 | 0.489 |
| 87 | 87 | 0.273 |
| 88 | 88 | 0.42 |
| 89 | 89 | 0.0392 |
| 9 | 9 | 0.517 |
| 90 | 90 | 0.875 |
| 91 | 91 | 0.535 |
| 92 | 92 | 0.236 |
| 93 | 93 | 0.44 |
| 94 | 94 | 0.663 |
| 95 | 95 | 0.994 |
| 96 | 96 | 0.861 |
| 97 | 97 | 0.325 |
| 98 | 98 | 0.97 |
| 99 | 99 | 0.00177 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12639
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000280 human tenocyte sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000630 (supportive cell)
0000135 (fibrocyte)
0000386 (attachment cell)
0000255 (eukaryotic cell)
0000388 (tendon cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000479 (tissue)
0007846 (dense regular connective tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000043 (tendon)
0007845 (regular connective tissue)
0002204 (musculoskeletal system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000280 (human tenocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
