FF:11450-119A1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005148 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008257;DRR009129;DRZ000554;DRZ001939;DRZ011904;DRZ013289 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002067,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620,CL:0002551 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000062 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor4.CNhs12052.11450-119A1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor4.CNhs12052.11450-119A1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor4.CNhs12052.11450-119A1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor4.CNhs12052.11450-119A1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor4.CNhs12052.11450-119A1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11450-119A1 | |id=FF:11450-119A1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000062 | ||
|is_obsolete= | |||
|library_id=CNhs12052 | |||
|library_id_phase_based=2:CNhs12052 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11450 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11450 | |||
|name=Fibroblast - Dermal, donor4 | |name=Fibroblast - Dermal, donor4 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12052,LSID838,release011,COMPLETED | |profile_hcage=CNhs12052,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0241110376195271,0,0,0,0,-0.160318030086386,0.0482220752390542,-0.277362132193514,-0.0357567406531445,0,0,0,0,0,0,0,0,0,0,0,0.0482220752390542,0,0.107235251911383,0,0,0,0,0,-0.0063370089337965,0,0,0.127601672480949,0,0,0,0,0,0,0,0,0,0,0,0,-0.133136876779107,0,0,0,0,0,0,0,0,0.0215954225542962,0,0,0,0.313215392568308,0,0.0395393107312747,0.0482220752390542,-0.00537147390834412,0,0,0.0337305435467595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0359966407152165,0.0458104436671305,0,0,0,0,0,0,0,0,0,-0.010224751572771,-0.127577442006115,0,0.167239921379507,0,0,-0.0498132759986522,0.0301870248745493,0,0,0.0241110376195271,0.0482220752390542,0,0,0,0,0,0,0,0,0,0,0,0,0,0.060234102361693,0,0,0,-0.158166450422989,-0.616327444537766,0,0,0,0.0237900816039174,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0498132759986522,0,0,0,0,0.091620887334261,0,0,0,0.167239921379507,0,0,-0.0155546098102691,0,0.080228336755265,-0.0952930672844177,0.0458104436671305,0,0.333160632131721,0,0.091620887334261,0,0,0,0,0,0,0,0.777463935225192,0,-0.0504125515893149,0,0,0,0,-0.0186252810838506,0.116802849881312,0,-0.0739459970215485,-0.020122185838314,0,0,0,0,-0.044343811912098,0,-0.0726574085546864,0.08451975305609,-0.0823986761608672,-0.0562743491037577,-0.055712496781182,0,0,0,0.116002026594099,0.0449208447282281,0,0,0.140630100057486,0.0958076591929775,0,0,0.0312304992280842,0,-0.015233086320008,0.00250937914846839,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0538540622256221,-0.195914425919112,-0.0220300195692375,0,0,0,-0.265381005191756,0.0056793253422161,0,0.912716060914983,0.171720940875913,-0.0102186052375924,0,0,-0.302389727009913,-0.0284677300612254,-0.44439414226269,0.0211251395434464,0.345891790476456,0.147346731801042,0.0482220752390542,0.133108797943141,0.268119617536204,0.0402711507200672,-0.0389905004947995,0.0104070703544991,0.094901412332854,-0.208318301045562,0,0,0.0141119608549579,-0.0277514668054351,0,0,-0.0135168860971081,-0.0299229545856687,-0.0902671788330899,0.0156082560609155,-0.0554471238351885,0.189023347313794,0.44541320565696,0.0519348433020519,0.00819071770656155,0.353611693485697,0,0,-0.0100472280575654,-0.092548812348292,-0.276540810908676,-0.122532533331084,0,-0.316737540431473,-0.020122185838314,0,0.160026564990964,0.105225568682257,0,0,-0.0104589121809912,0,0,0,0,0.0482220752390542,0.238901010931505,-0.40841797227031,-0.101781390795688,0,-0.063637314370719,0.0300073477169373,-0.140678384068432,0,-0.106552352966132,0.167205495110914,-0.0375158901014814,-0.108878480123092,0,0.102121460954666,0.140403897878609,-0.0168075732428945,-0.25515488401223,-0.010224751572771,-0.00251801253828254,0.0099251827140805,0.0981092627907851,0.0905191283467442,0.0683203500059909,0.466187723031986,0,0.0812057135857248,-0.478874003365602,-0.0677511387189936,0.143749714307182,0.131074170759856,-0.0035906503863159,0,0.0208893378143149,0,-0.0283046300867305,-0.081199330684479,-0.0574139993129847,0.198941026411222,0,-0.00752391126533425,-0.657056767014118,0.0482220752390542,-0.044102256512521,0.0424894792966978,0,0.209805744175552,0.0396963539194117,-0.211650427864589,0.206125159659673,0,0.102637650572876,0,0,-0.0836661612399801,-0.235476037764389,0,-0.189322958938148,-0.348644651953585,-0.127618212815629,-0.0677489981958798,0,0,-0.263824962725023,0,0.402544825304774,-0.405303935562108,0.200624128255923,-0.259610496448442,0.716920524074373,0.014072094819243,0.045767359295177,0,0,-0.129305690726121,0,0.119084765833924,0,0.0482220752390542,0.135852913412489,0.17105629438283,0,0,0.287684407372963,0.0253082077095588,0,0,0,0,0.0241110376195271,0,0,-0.169779571868551,0.213484988473973,0,0.0823801036798824,0,0,0,0,0,0.0220501827179778,0,0.131074170759856,-0.029055640135355,0.00912064072213935,0.044222505703087,0,0,0,0,0.338591152953799,-0.0359966407152165,0,-0.0836406312585775,0,0,0,0,0.1744172724706,0,0,0.0241110376195271,0,-0.057730457053664,-0.222587700690496,0,0,0,0.0603740497490987,0,0,0,0,0.094487046839656,0,0,-0.209655092606661,0,-0.128170072143281,-0.0815818795468414,0,0.228204406150036,-0.216278680430579,-0.72773573835981,0,0.167239921379507,-0.261347131789888,0,0,0.156117679940329,0,0,0.00318626167341015,0,0,0,0,0,0,0.123013938951133,0.0458104436671305,0,0.0482220752390542,0,0,0,0,0,0,0,0.0482220752390542,-0.210266964121132,-0.0440019814194562,0,0,0,0,0,0,0,0.13028414567053,-0.144692450342257,0,0,0.0579851490602505,0,0,0,0.0237900816039174,0,0.326848414720392,0,0,0,0,0,-0.00537147390834412,0,0,0,0.0482220752390542,-0.0715134813062891,0,0,-0.277362132193514,0,0,0,0,0,0,0.00104201802934372,0,0,0,0,0,0,-0.0750970107963935,-0.629430586308342,0,0.091620887334261,0,0,0,0.0482220752390542,0,-0.143759127446234,0,0,0,0,-0.0222634863747162,0,0,0,0.317478695990562,0,-0.160318030086386,0,0,0,0,0,0.0482220752390542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579876181271923,0,0.091620887334261,0.0348334888136714,0,0,0.149639577659176,0,0,0,0,0,0,-0.00722938640899995,0,0,0,0,0,0,0,0.0241110376195271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0107470061855613,0,0,0,0,0,0,0,-0.0063370089337965,0,0.0482220752390542,-0.0920328098005262,0,0,0,0,0,0,0.128924079350002,-0.067096202957538,0.0818816416882013,0,0,0,0.100004596266978,0.313215392568308,0,0.00631867613820614,0.0482220752390542,0.19378087484091,0.0482220752390542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107235251911383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0241110376195271,0,0,0,0,0.0458104436671305,0,0,0,0,0,0.0482220752390542,0.0315257221045117,0.167239921379507,0.0241110376195271,0.0482220752390542,0,0,0,0,0.0482220752390542,0,0,0,0,0.0241110376195271,0,0,0,0,0,0,0,0,0.0482220752390542,0.0872214531108689,0,0,0,-0.121465342322783,0,0,0,0,0,0,0,0,0.131074170759856,0,0,0,0,0,0,0,0,0,0,0,0.0482220752390542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.27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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC2305 | |rna_catalog_number=SC2305 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.26453303300389e-282!GO:0043226;organelle;8.08706550369301e-232!GO:0043229;intracellular organelle;1.75053384989484e-231!GO:0043231;intracellular membrane-bound organelle;4.59026329422315e-230!GO:0043227;membrane-bound organelle;1.08016011586679e-229!GO:0005737;cytoplasm;3.42263684679892e-185!GO:0044422;organelle part;1.00709201015949e-168!GO:0044446;intracellular organelle part;2.84532415698663e-167!GO:0044444;cytoplasmic part;1.42207536135165e-128!GO:0032991;macromolecular complex;2.33234141678162e-113!GO:0044237;cellular metabolic process;4.34995914133762e-111!GO:0044238;primary metabolic process;4.77313255559316e-110!GO:0005634;nucleus;1.29069827509765e-109!GO:0043170;macromolecule metabolic process;2.19430686137372e-102!GO:0030529;ribonucleoprotein complex;1.11467365028561e-99!GO:0044428;nuclear part;7.3043969163691e-90!GO:0043233;organelle lumen;4.45608616684552e-86!GO:0031974;membrane-enclosed lumen;4.45608616684552e-86!GO:0003723;RNA binding;1.9682190669816e-78!GO:0005739;mitochondrion;2.02925608241933e-74!GO:0005515;protein binding;1.05986645763776e-71!GO:0043283;biopolymer metabolic process;5.21746405535979e-65!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.45555380829707e-61!GO:0006396;RNA processing;4.38582532001403e-60!GO:0005840;ribosome;2.17787615877482e-58!GO:0043234;protein complex;4.14546802417264e-56!GO:0010467;gene expression;9.61794225684853e-56!GO:0016043;cellular component organization and biogenesis;1.18261407464507e-53!GO:0006412;translation;8.14114124749691e-53!GO:0031981;nuclear lumen;4.62982897598457e-52!GO:0031090;organelle membrane;1.24015559994341e-50!GO:0044429;mitochondrial part;1.29425781168513e-50!GO:0003735;structural constituent of ribosome;2.02827431664664e-50!GO:0019538;protein metabolic process;4.38613922583327e-49!GO:0031967;organelle envelope;1.85013286303564e-47!GO:0031975;envelope;5.21699666940229e-47!GO:0043228;non-membrane-bound organelle;2.46501061214903e-45!GO:0043232;intracellular non-membrane-bound organelle;2.46501061214903e-45!GO:0009058;biosynthetic process;2.80438634337485e-45!GO:0006259;DNA metabolic process;1.44372972661888e-44!GO:0016071;mRNA metabolic process;4.25633023345032e-44!GO:0033279;ribosomal subunit;9.01351413910353e-44!GO:0044260;cellular macromolecule metabolic process;1.54303779181252e-43!GO:0044267;cellular protein metabolic process;3.15038599650001e-43!GO:0008380;RNA splicing;2.54298715426354e-42!GO:0006996;organelle organization and biogenesis;3.25110055468785e-42!GO:0044249;cellular biosynthetic process;3.25110055468785e-42!GO:0015031;protein transport;2.13911613578437e-41!GO:0033036;macromolecule localization;2.88767461223344e-41!GO:0009059;macromolecule biosynthetic process;8.84366985308783e-40!GO:0005829;cytosol;3.27719201365128e-39!GO:0003676;nucleic acid binding;4.32179973398128e-39!GO:0006397;mRNA processing;1.1904803107309e-38!GO:0045184;establishment of protein localization;8.5275638182187e-38!GO:0008104;protein localization;1.87952670657244e-37!GO:0065003;macromolecular complex assembly;5.94982140488728e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.02712528787363e-36!GO:0046907;intracellular transport;8.18240602008342e-36!GO:0007049;cell cycle;4.68130899444325e-35!GO:0022607;cellular component assembly;3.9718747143318e-33!GO:0005654;nucleoplasm;2.77109253687757e-32!GO:0005740;mitochondrial envelope;9.268655001959e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.15529835448561e-30!GO:0006886;intracellular protein transport;4.61924306872331e-30!GO:0031966;mitochondrial membrane;1.26648309040474e-29!GO:0005681;spliceosome;1.4978866999511e-29!GO:0019866;organelle inner membrane;4.35487074008517e-29!GO:0000166;nucleotide binding;5.02872057090465e-29!GO:0022402;cell cycle process;8.88955527002759e-28!GO:0016070;RNA metabolic process;1.57398523932983e-27!GO:0000278;mitotic cell cycle;3.89445830108117e-27!GO:0006974;response to DNA damage stimulus;4.11393944227336e-27!GO:0005743;mitochondrial inner membrane;6.52433572042416e-27!GO:0044451;nucleoplasm part;8.70191967207831e-26!GO:0005694;chromosome;1.71932191912741e-25!GO:0044445;cytosolic part;2.57485340721599e-24!GO:0031980;mitochondrial lumen;2.47413939836544e-23!GO:0005759;mitochondrial matrix;2.47413939836544e-23!GO:0015934;large ribosomal subunit;2.93486289364061e-23!GO:0044427;chromosomal part;3.45235742598791e-23!GO:0051649;establishment of cellular localization;7.51689260344795e-23!GO:0016462;pyrophosphatase activity;8.07333011415681e-23!GO:0051641;cellular localization;8.97248198887628e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.20584320894651e-22!GO:0022403;cell cycle phase;1.22363907855677e-22!GO:0006281;DNA repair;1.25907556424181e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;2.00460218118381e-22!GO:0006119;oxidative phosphorylation;2.12081379512821e-22!GO:0000087;M phase of mitotic cell cycle;4.84361819411753e-22!GO:0017111;nucleoside-triphosphatase activity;5.53735513113783e-22!GO:0015935;small ribosomal subunit;1.15019816084251e-21!GO:0007067;mitosis;1.27161230222933e-21!GO:0044455;mitochondrial membrane part;1.55572357146773e-21!GO:0012505;endomembrane system;1.80086018002825e-21!GO:0006457;protein folding;8.57191127141282e-21!GO:0005730;nucleolus;1.34693704420207e-20!GO:0017076;purine nucleotide binding;5.84332374466543e-20!GO:0016874;ligase activity;6.03049988704471e-20!GO:0032553;ribonucleotide binding;1.469867719182e-19!GO:0032555;purine ribonucleotide binding;1.469867719182e-19!GO:0051276;chromosome organization and biogenesis;2.02347248903847e-19!GO:0051301;cell division;2.33598732377171e-19!GO:0022618;protein-RNA complex assembly;2.7839377051231e-19!GO:0000279;M phase;3.67855915441332e-19!GO:0009719;response to endogenous stimulus;4.21574011589358e-19!GO:0006512;ubiquitin cycle;2.36713858759346e-18!GO:0048770;pigment granule;3.48760148264602e-18!GO:0042470;melanosome;3.48760148264602e-18!GO:0006260;DNA replication;4.39502123909084e-18!GO:0005746;mitochondrial respiratory chain;7.52345987572765e-18!GO:0042254;ribosome biogenesis and assembly;1.25567683789805e-17!GO:0005761;mitochondrial ribosome;1.68442574572007e-17!GO:0000313;organellar ribosome;1.68442574572007e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.75955298006184e-17!GO:0044265;cellular macromolecule catabolic process;1.96394267722742e-17!GO:0005524;ATP binding;2.27389850780559e-17!GO:0043285;biopolymer catabolic process;2.27389850780559e-17!GO:0006511;ubiquitin-dependent protein catabolic process;2.39233110137225e-17!GO:0019941;modification-dependent protein catabolic process;2.63323881916513e-17!GO:0043632;modification-dependent macromolecule catabolic process;2.63323881916513e-17!GO:0030554;adenyl nucleotide binding;3.72560736524685e-17!GO:0008135;translation factor activity, nucleic acid binding;5.22050860442704e-17!GO:0044257;cellular protein catabolic process;6.175323035326e-17!GO:0032559;adenyl ribonucleotide binding;6.31079761306416e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.59582340416672e-17!GO:0051186;cofactor metabolic process;1.17560358667787e-16!GO:0005635;nuclear envelope;2.33862230003908e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.63237646494605e-16!GO:0050136;NADH dehydrogenase (quinone) activity;5.63237646494605e-16!GO:0003954;NADH dehydrogenase activity;5.63237646494605e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.63237646494605e-16!GO:0009057;macromolecule catabolic process;7.0917558568285e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;9.41751483119647e-16!GO:0000375;RNA splicing, via transesterification reactions;9.41751483119647e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.41751483119647e-16!GO:0005783;endoplasmic reticulum;1.16277079673772e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.29267366540435e-15!GO:0030163;protein catabolic process;2.09382874425396e-15!GO:0031965;nuclear membrane;3.06348474560075e-15!GO:0006605;protein targeting;3.17809228979333e-15!GO:0044453;nuclear membrane part;5.08231902712609e-15!GO:0006325;establishment and/or maintenance of chromatin architecture;6.63032755876951e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.2029578286496e-15!GO:0044432;endoplasmic reticulum part;1.5252362675697e-14!GO:0008134;transcription factor binding;2.10454395005412e-14!GO:0042775;organelle ATP synthesis coupled electron transport;2.15959850757597e-14!GO:0042773;ATP synthesis coupled electron transport;2.15959850757597e-14!GO:0006323;DNA packaging;2.76549203283377e-14!GO:0030964;NADH dehydrogenase complex (quinone);3.03584707998499e-14!GO:0045271;respiratory chain complex I;3.03584707998499e-14!GO:0005747;mitochondrial respiratory chain complex I;3.03584707998499e-14!GO:0044248;cellular catabolic process;3.05148682421285e-14!GO:0043412;biopolymer modification;6.57644354324186e-14!GO:0006399;tRNA metabolic process;6.65143700994908e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.27610102568624e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.07781450868453e-13!GO:0003743;translation initiation factor activity;2.13812609528178e-13!GO:0005794;Golgi apparatus;2.38877601676479e-13!GO:0051082;unfolded protein binding;2.74739480023275e-13!GO:0048193;Golgi vesicle transport;2.89332794557414e-13!GO:0000074;regulation of progression through cell cycle;6.49389275408276e-13!GO:0051726;regulation of cell cycle;7.21758915229721e-13!GO:0006732;coenzyme metabolic process;7.83682841593594e-13!GO:0016604;nuclear body;1.17427601512334e-12!GO:0065004;protein-DNA complex assembly;1.48207343536672e-12!GO:0005643;nuclear pore;1.88917284293022e-12!GO:0000785;chromatin;3.29298470956626e-12!GO:0009055;electron carrier activity;4.04599438262355e-12!GO:0006413;translational initiation;4.57664753514421e-12!GO:0016887;ATPase activity;4.94325079582864e-12!GO:0006333;chromatin assembly or disassembly;5.32177899200826e-12!GO:0006464;protein modification process;5.52088861048585e-12!GO:0015630;microtubule cytoskeleton;1.0428344782026e-11!GO:0006364;rRNA processing;1.1154018221846e-11!GO:0042623;ATPase activity, coupled;1.18693439129382e-11!GO:0005793;ER-Golgi intermediate compartment;1.37914457794002e-11!GO:0006913;nucleocytoplasmic transport;1.58485552270358e-11!GO:0004386;helicase activity;2.36617370953654e-11!GO:0016072;rRNA metabolic process;3.19192280089088e-11!GO:0051169;nuclear transport;4.15968786605244e-11!GO:0009259;ribonucleotide metabolic process;4.16342489517557e-11!GO:0006446;regulation of translational initiation;6.81090885172124e-11!GO:0006163;purine nucleotide metabolic process;8.72259730290902e-11!GO:0046930;pore complex;1.13034351717735e-10!GO:0065002;intracellular protein transport across a membrane;1.1758908389262e-10!GO:0043687;post-translational protein modification;1.4455615060092e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.45751190606445e-10!GO:0006403;RNA localization;1.65203885715173e-10!GO:0050657;nucleic acid transport;1.65969894596722e-10!GO:0051236;establishment of RNA localization;1.65969894596722e-10!GO:0050658;RNA transport;1.65969894596722e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.24990243382823e-10!GO:0004812;aminoacyl-tRNA ligase activity;2.24990243382823e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.24990243382823e-10!GO:0050794;regulation of cellular process;2.81937652082435e-10!GO:0006334;nucleosome assembly;2.8764359778071e-10!GO:0016607;nuclear speck;3.0961487530672e-10!GO:0005789;endoplasmic reticulum membrane;4.4844984997391e-10!GO:0009150;purine ribonucleotide metabolic process;4.65230128143573e-10!GO:0043038;amino acid activation;4.88807232456503e-10!GO:0006418;tRNA aminoacylation for protein translation;4.88807232456503e-10!GO:0043039;tRNA aminoacylation;4.88807232456503e-10!GO:0016192;vesicle-mediated transport;6.58424072657073e-10!GO:0006164;purine nucleotide biosynthetic process;8.23446920746583e-10!GO:0008026;ATP-dependent helicase activity;1.00050972703952e-09!GO:0003697;single-stranded DNA binding;1.04860233802921e-09!GO:0008565;protein transporter activity;1.0500199268321e-09!GO:0031497;chromatin assembly;1.05940192811185e-09!GO:0006461;protein complex assembly;1.06379466163073e-09!GO:0009260;ribonucleotide biosynthetic process;1.07320169457981e-09!GO:0000775;chromosome, pericentric region;1.15466046220878e-09!GO:0008639;small protein conjugating enzyme activity;1.86854117084855e-09!GO:0005819;spindle;2.03830151527146e-09!GO:0030532;small nuclear ribonucleoprotein complex;2.05753720011107e-09!GO:0043566;structure-specific DNA binding;2.26592919760575e-09!GO:0009060;aerobic respiration;2.37295298122739e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.55236011868508e-09!GO:0003712;transcription cofactor activity;3.04959097951145e-09!GO:0006366;transcription from RNA polymerase II promoter;3.5394372725854e-09!GO:0005813;centrosome;3.68052254738553e-09!GO:0004842;ubiquitin-protein ligase activity;4.11912497583346e-09!GO:0009152;purine ribonucleotide biosynthetic process;4.35418988943887e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.61243032547724e-09!GO:0006261;DNA-dependent DNA replication;5.09970996580175e-09!GO:0045333;cellular respiration;5.41627267723228e-09!GO:0009141;nucleoside triphosphate metabolic process;5.80447094460594e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.39177204382346e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.57281782894504e-09!GO:0017038;protein import;7.78086703521752e-09!GO:0016779;nucleotidyltransferase activity;9.52912975813085e-09!GO:0051028;mRNA transport;9.60711059136976e-09!GO:0019787;small conjugating protein ligase activity;9.87784498355448e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.96831443634124e-09!GO:0009144;purine nucleoside triphosphate metabolic process;9.96831443634124e-09!GO:0005815;microtubule organizing center;1.2460232353133e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.35647449292273e-08!GO:0051188;cofactor biosynthetic process;1.62033468848586e-08!GO:0012501;programmed cell death;1.83985728688759e-08!GO:0009056;catabolic process;1.89999033087474e-08!GO:0016740;transferase activity;2.09864749660338e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.13957744868747e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.34821844781849e-08!GO:0006915;apoptosis;2.59087166894412e-08!GO:0006099;tricarboxylic acid cycle;5.10865443539061e-08!GO:0046356;acetyl-CoA catabolic process;5.10865443539061e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.07739943475558e-08!GO:0051329;interphase of mitotic cell cycle;7.13406140415477e-08!GO:0005667;transcription factor complex;8.03304159762402e-08!GO:0007005;mitochondrion organization and biogenesis;8.0510607067434e-08!GO:0009142;nucleoside triphosphate biosynthetic process;9.56070725926734e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.56070725926734e-08!GO:0016881;acid-amino acid ligase activity;1.0276593237609e-07!GO:0046034;ATP metabolic process;1.16046904714787e-07!GO:0009109;coenzyme catabolic process;1.25716029035262e-07!GO:0006084;acetyl-CoA metabolic process;1.38667814690228e-07!GO:0030120;vesicle coat;1.57760316616233e-07!GO:0030662;coated vesicle membrane;1.57760316616233e-07!GO:0015986;ATP synthesis coupled proton transport;1.58020665535805e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.58020665535805e-07!GO:0051325;interphase;1.65891568398432e-07!GO:0005657;replication fork;1.66602920154582e-07!GO:0007051;spindle organization and biogenesis;1.67430274092489e-07!GO:0003924;GTPase activity;1.71349839256014e-07!GO:0019222;regulation of metabolic process;2.05589921490989e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.08379990692034e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.08379990692034e-07!GO:0008219;cell death;2.14223874332209e-07!GO:0016265;death;2.14223874332209e-07!GO:0016568;chromatin modification;2.2072495408815e-07!GO:0009117;nucleotide metabolic process;2.26078708172449e-07!GO:0048523;negative regulation of cellular process;2.28739952367541e-07!GO:0051187;cofactor catabolic process;2.54655198305053e-07!GO:0003899;DNA-directed RNA polymerase activity;2.77072596049027e-07!GO:0000075;cell cycle checkpoint;4.14502897173627e-07!GO:0000245;spliceosome assembly;4.30010768212854e-07!GO:0048475;coated membrane;4.56275986778728e-07!GO:0030117;membrane coat;4.56275986778728e-07!GO:0019829;cation-transporting ATPase activity;4.71422093410913e-07!GO:0008094;DNA-dependent ATPase activity;5.23052667418698e-07!GO:0032446;protein modification by small protein conjugation;8.47063439224235e-07!GO:0045259;proton-transporting ATP synthase complex;9.92241584134604e-07!GO:0005788;endoplasmic reticulum lumen;1.13112533791451e-06!GO:0044431;Golgi apparatus part;1.13138070432329e-06!GO:0009108;coenzyme biosynthetic process;1.15072460257689e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.25154565102437e-06!GO:0005762;mitochondrial large ribosomal subunit;1.2902585083503e-06!GO:0000315;organellar large ribosomal subunit;1.2902585083503e-06!GO:0016491;oxidoreductase activity;1.35879711559677e-06!GO:0016567;protein ubiquitination;1.5785930713935e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.73143775597671e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.91571651604733e-06!GO:0016853;isomerase activity;2.03709052688519e-06!GO:0051246;regulation of protein metabolic process;2.28906057518286e-06!GO:0006754;ATP biosynthetic process;2.30482541817753e-06!GO:0006753;nucleoside phosphate metabolic process;2.30482541817753e-06!GO:0051170;nuclear import;2.30482541817753e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.39710634262303e-06!GO:0043623;cellular protein complex assembly;2.64110737479931e-06!GO:0050789;regulation of biological process;2.72030658020262e-06!GO:0006752;group transfer coenzyme metabolic process;3.52731649221578e-06!GO:0016859;cis-trans isomerase activity;3.6312262964333e-06!GO:0005768;endosome;4.05121567602062e-06!GO:0006793;phosphorus metabolic process;4.43715976806113e-06!GO:0006796;phosphate metabolic process;4.43715976806113e-06!GO:0000151;ubiquitin ligase complex;4.51828151938995e-06!GO:0006606;protein import into nucleus;5.28289162367842e-06!GO:0016126;sterol biosynthetic process;5.36540242312512e-06!GO:0000786;nucleosome;5.57590991148726e-06!GO:0008654;phospholipid biosynthetic process;6.02366674715508e-06!GO:0005839;proteasome core complex (sensu Eukaryota);7.22708312778211e-06!GO:0045454;cell redox homeostasis;7.28218981751586e-06!GO:0006613;cotranslational protein targeting to membrane;7.82044270988875e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.82044270988875e-06!GO:0006091;generation of precursor metabolites and energy;8.0521327986526e-06!GO:0048519;negative regulation of biological process;8.77393890434498e-06!GO:0000314;organellar small ribosomal subunit;9.63323647357772e-06!GO:0005763;mitochondrial small ribosomal subunit;9.63323647357772e-06!GO:0031324;negative regulation of cellular metabolic process;1.15979558034162e-05!GO:0016787;hydrolase activity;1.2844290830087e-05!GO:0003724;RNA helicase activity;1.45130147891427e-05!GO:0006302;double-strand break repair;1.63204913189704e-05!GO:0007010;cytoskeleton organization and biogenesis;1.76982109571726e-05!GO:0006310;DNA recombination;2.08146037430314e-05!GO:0008033;tRNA processing;2.10228312004353e-05!GO:0045786;negative regulation of progression through cell cycle;2.10228312004353e-05!GO:0044440;endosomal part;2.11980954961901e-05!GO:0010008;endosome membrane;2.11980954961901e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.21046076107369e-05!GO:0000139;Golgi membrane;2.24448831467078e-05!GO:0005525;GTP binding;2.33367341641734e-05!GO:0006916;anti-apoptosis;2.67098160435938e-05!GO:0005798;Golgi-associated vesicle;2.70438561816771e-05!GO:0043021;ribonucleoprotein binding;2.83219564950803e-05!GO:0031252;leading edge;2.8613303115823e-05!GO:0051427;hormone receptor binding;2.88140004539422e-05!GO:0016563;transcription activator activity;3.03687652944592e-05!GO:0031323;regulation of cellular metabolic process;3.1615990169708e-05!GO:0003684;damaged DNA binding;3.76547706139592e-05!GO:0004298;threonine endopeptidase activity;3.76705789410615e-05!GO:0007059;chromosome segregation;4.13770966204307e-05!GO:0016310;phosphorylation;4.36479774513776e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.51356680746853e-05!GO:0000776;kinetochore;4.7786932743422e-05!GO:0006350;transcription;4.98704345700245e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.26538696703674e-05!GO:0035257;nuclear hormone receptor binding;6.41658048213264e-05!GO:0016741;transferase activity, transferring one-carbon groups;6.78276075857616e-05!GO:0008168;methyltransferase activity;7.00449856444597e-05!GO:0030867;rough endoplasmic reticulum membrane;7.39929678486867e-05!GO:0003713;transcription coactivator activity;7.49161030411006e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;7.85031577854447e-05!GO:0051052;regulation of DNA metabolic process;8.32559859977218e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;8.77845783354591e-05!GO:0016564;transcription repressor activity;8.99103238894773e-05!GO:0019899;enzyme binding;9.10832691492273e-05!GO:0031988;membrane-bound vesicle;9.97371971549766e-05!GO:0016023;cytoplasmic membrane-bound vesicle;0.00010458813335855!GO:0016363;nuclear matrix;0.000108982112112002!GO:0031968;organelle outer membrane;0.000110109232544118!GO:0009892;negative regulation of metabolic process;0.00011243167128041!GO:0000059;protein import into nucleus, docking;0.000113801503225068!GO:0006383;transcription from RNA polymerase III promoter;0.00011662189210118!GO:0042981;regulation of apoptosis;0.000123234746547384!GO:0043069;negative regulation of programmed cell death;0.000124305241757711!GO:0019867;outer membrane;0.000126354643898393!GO:0003714;transcription corepressor activity;0.000137586861774507!GO:0007088;regulation of mitosis;0.00015049944200848!GO:0051168;nuclear export;0.00015049944200848!GO:0043066;negative regulation of apoptosis;0.000151406520060286!GO:0043067;regulation of programmed cell death;0.000153744305909892!GO:0005048;signal sequence binding;0.00016119089688!GO:0006626;protein targeting to mitochondrion;0.000164027001899029!GO:0005874;microtubule;0.000164027001899029!GO:0006695;cholesterol biosynthetic process;0.000174063991269726!GO:0046474;glycerophospholipid biosynthetic process;0.000175324443925765!GO:0005791;rough endoplasmic reticulum;0.000176297325627142!GO:0044452;nucleolar part;0.000179531708745563!GO:0016481;negative regulation of transcription;0.000196324820361528!GO:0005770;late endosome;0.000197123344791731!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000200441974306902!GO:0005905;coated pit;0.000200823420161447!GO:0032561;guanyl ribonucleotide binding;0.000201430756048885!GO:0019001;guanyl nucleotide binding;0.000201430756048885!GO:0003682;chromatin binding;0.00020624020335442!GO:0007052;mitotic spindle organization and biogenesis;0.000206289679964067!GO:0007093;mitotic cell cycle checkpoint;0.000214511307119062!GO:0005769;early endosome;0.00023181774667761!GO:0030880;RNA polymerase complex;0.000233645487887004!GO:0003678;DNA helicase activity;0.000240308471086217!GO:0003690;double-stranded DNA binding;0.000265609501011176!GO:0043681;protein import into mitochondrion;0.000276798177615139!GO:0006612;protein targeting to membrane;0.000294983487273191!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000300206094909906!GO:0004527;exonuclease activity;0.000350467256431592!GO:0009165;nucleotide biosynthetic process;0.000373307942212456!GO:0051252;regulation of RNA metabolic process;0.000375720836086354!GO:0004576;oligosaccharyl transferase activity;0.000375720836086354!GO:0008610;lipid biosynthetic process;0.000385473200845709!GO:0031982;vesicle;0.000394993975632092!GO:0008250;oligosaccharyl transferase complex;0.000412668705764201!GO:0005885;Arp2/3 protein complex;0.000418349518736116!GO:0006414;translational elongation;0.00042363805549052!GO:0003729;mRNA binding;0.000429560387805609!GO:0031410;cytoplasmic vesicle;0.000461100609631855!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000467900236530042!GO:0010468;regulation of gene expression;0.000467900236530042!GO:0007017;microtubule-based process;0.00047635499944091!GO:0033116;ER-Golgi intermediate compartment membrane;0.000497801480424499!GO:0051540;metal cluster binding;0.000507086839087223!GO:0051536;iron-sulfur cluster binding;0.000507086839087223!GO:0005741;mitochondrial outer membrane;0.000522671356036561!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000542490170738966!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000563891369169519!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000564469770338226!GO:0000428;DNA-directed RNA polymerase complex;0.000564469770338226!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000581280681905013!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000584847734397483!GO:0008186;RNA-dependent ATPase activity;0.000623012641217865!GO:0042802;identical protein binding;0.000703354638894966!GO:0005684;U2-dependent spliceosome;0.000728211562218714!GO:0030663;COPI coated vesicle membrane;0.000758873270633823!GO:0030126;COPI vesicle coat;0.000758873270633823!GO:0019843;rRNA binding;0.000785959519467082!GO:0000082;G1/S transition of mitotic cell cycle;0.000797046778270627!GO:0006839;mitochondrial transport;0.000807055772206962!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.000830769575410828!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000833261823639471!GO:0003677;DNA binding;0.000833512452849256!GO:0000049;tRNA binding;0.00085286734098949!GO:0051920;peroxiredoxin activity;0.000881310894075723!GO:0051789;response to protein stimulus;0.00090876148999564!GO:0006986;response to unfolded protein;0.00090876148999564!GO:0046467;membrane lipid biosynthetic process;0.000995105509776994!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000995105509776994!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000995105509776994!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000995105509776994!GO:0000922;spindle pole;0.00106071893679!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0010778211656138!GO:0030036;actin cytoskeleton organization and biogenesis;0.00111650480762705!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0011210892544429!GO:0007006;mitochondrial membrane organization and biogenesis;0.0011356286793182!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00114597273415969!GO:0050662;coenzyme binding;0.00114850181262552!GO:0005876;spindle microtubule;0.00116756334684189!GO:0048500;signal recognition particle;0.00128565468983207!GO:0031072;heat shock protein binding;0.00132865449695287!GO:0006352;transcription initiation;0.0014397039806606!GO:0048471;perinuclear region of cytoplasm;0.0014906345768557!GO:0006402;mRNA catabolic process;0.0014906345768557!GO:0018196;peptidyl-asparagine modification;0.0014906345768557!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0014906345768557!GO:0015631;tubulin binding;0.00153715270742637!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00156823680832144!GO:0051287;NAD binding;0.00160891845370295!GO:0004004;ATP-dependent RNA helicase activity;0.00164906418206302!GO:0006275;regulation of DNA replication;0.00171614838979488!GO:0006891;intra-Golgi vesicle-mediated transport;0.00173463789200512!GO:0008312;7S RNA binding;0.00175084795459534!GO:0006289;nucleotide-excision repair;0.00175210078090335!GO:0032508;DNA duplex unwinding;0.00177191051906738!GO:0032392;DNA geometric change;0.00177191051906738!GO:0030133;transport vesicle;0.001953146630572!GO:0030521;androgen receptor signaling pathway;0.00197196553453944!GO:0000910;cytokinesis;0.00199558999424655!GO:0046489;phosphoinositide biosynthetic process;0.00207225264560738!GO:0009112;nucleobase metabolic process;0.00210173321399599!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00211348029695463!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00211348029695463!GO:0030137;COPI-coated vesicle;0.00213545623361882!GO:0009116;nucleoside metabolic process;0.00225815546895844!GO:0032774;RNA biosynthetic process;0.00225930738222248!GO:0000228;nuclear chromosome;0.00225930738222248!GO:0004518;nuclease activity;0.00228085253693018!GO:0043284;biopolymer biosynthetic process;0.00228085253693018!GO:0019752;carboxylic acid metabolic process;0.00228085253693018!GO:0008139;nuclear localization sequence binding;0.00230681272505039!GO:0035258;steroid hormone receptor binding;0.00238484505052764!GO:0043488;regulation of mRNA stability;0.00238577051641644!GO:0043487;regulation of RNA stability;0.00238577051641644!GO:0006220;pyrimidine nucleotide metabolic process;0.00239675775265518!GO:0006082;organic acid metabolic process;0.00240462552028498!GO:0043596;nuclear replication fork;0.00241907651919406!GO:0008180;signalosome;0.00244225616745298!GO:0006268;DNA unwinding during replication;0.00275990958972088!GO:0051087;chaperone binding;0.00284500102430038!GO:0006351;transcription, DNA-dependent;0.00295363385435169!GO:0008361;regulation of cell size;0.00309296174037251!GO:0007050;cell cycle arrest;0.00309714266028076!GO:0006401;RNA catabolic process;0.00309714266028076!GO:0031570;DNA integrity checkpoint;0.00314547474821316!GO:0046483;heterocycle metabolic process;0.00314547474821316!GO:0051539;4 iron, 4 sulfur cluster binding;0.0031479457024215!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00317438299970987!GO:0045047;protein targeting to ER;0.00317438299970987!GO:0030658;transport vesicle membrane;0.00327412744873255!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0033429777246255!GO:0005637;nuclear inner membrane;0.00337505394676232!GO:0042770;DNA damage response, signal transduction;0.00341885233678531!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00348497526072521!GO:0016049;cell growth;0.00362379048919951!GO:0006520;amino acid metabolic process;0.00372843797752063!GO:0006595;polyamine metabolic process;0.00412839999276258!GO:0004674;protein serine/threonine kinase activity;0.0041930049397819!GO:0048037;cofactor binding;0.00421505535126702!GO:0006650;glycerophospholipid metabolic process;0.00432836371821249!GO:0031124;mRNA 3'-end processing;0.00441623645503179!GO:0032984;macromolecular complex disassembly;0.00441858865988195!GO:0030134;ER to Golgi transport vesicle;0.00443440019674159!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00449139287853934!GO:0005096;GTPase activator activity;0.00457938597543346!GO:0000725;recombinational repair;0.00465408144866099!GO:0000724;double-strand break repair via homologous recombination;0.00465408144866099!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00489619020370866!GO:0030132;clathrin coat of coated pit;0.00515570829140208!GO:0004003;ATP-dependent DNA helicase activity;0.00525121620257087!GO:0017166;vinculin binding;0.00525352502682226!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00528599587547381!GO:0065007;biological regulation;0.0053012433865056!GO:0031901;early endosome membrane;0.00530309719839768!GO:0030029;actin filament-based process;0.00544087458791471!GO:0030118;clathrin coat;0.00545561444336175!GO:0016251;general RNA polymerase II transcription factor activity;0.00584856455890068!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00597887410245527!GO:0001726;ruffle;0.00603805511999543!GO:0030127;COPII vesicle coat;0.00618857772732533!GO:0012507;ER to Golgi transport vesicle membrane;0.00618857772732533!GO:0008047;enzyme activator activity;0.00631416926035708!GO:0006144;purine base metabolic process;0.00638339469309683!GO:0019206;nucleoside kinase activity;0.00642528035684434!GO:0003711;transcription elongation regulator activity;0.00646276460254688!GO:0006284;base-excision repair;0.0069395417154595!GO:0030176;integral to endoplasmic reticulum membrane;0.00703109691858282!GO:0045449;regulation of transcription;0.00724203322959556!GO:0006405;RNA export from nucleus;0.00724203322959556!GO:0043624;cellular protein complex disassembly;0.00727282216256421!GO:0003746;translation elongation factor activity;0.00731561459398443!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00740147299422088!GO:0043241;protein complex disassembly;0.00740147299422088!GO:0006611;protein export from nucleus;0.00749274456116085!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00803121455477794!GO:0032200;telomere organization and biogenesis;0.00829769526067756!GO:0000723;telomere maintenance;0.00829769526067756!GO:0005832;chaperonin-containing T-complex;0.00830280919448193!GO:0042393;histone binding;0.00830985090838255!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00831798478520679!GO:0000339;RNA cap binding;0.00850973555303367!GO:0043601;nuclear replisome;0.00850973555303367!GO:0030894;replisome;0.00850973555303367!GO:0016408;C-acyltransferase activity;0.00854292135769377!GO:0043022;ribosome binding;0.00854800461431355!GO:0016272;prefoldin complex;0.00867435513242836!GO:0008652;amino acid biosynthetic process;0.00867821361183391!GO:0000792;heterochromatin;0.00900676871502689!GO:0005758;mitochondrial intermembrane space;0.00902717109188294!GO:0030660;Golgi-associated vesicle membrane;0.00918237131908847!GO:0000287;magnesium ion binding;0.00949194196523271!GO:0001558;regulation of cell growth;0.009773551595779!GO:0016407;acetyltransferase activity;0.0102176885000322!GO:0005100;Rho GTPase activator activity;0.0102327141366584!GO:0000077;DNA damage checkpoint;0.0103562552391478!GO:0048522;positive regulation of cellular process;0.0107330862315157!GO:0030027;lamellipodium;0.0108531973699999!GO:0009451;RNA modification;0.0110324430378563!GO:0000096;sulfur amino acid metabolic process;0.011620275293041!GO:0000819;sister chromatid segregation;0.0116580078367051!GO:0019783;small conjugating protein-specific protease activity;0.0116751115313575!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0119060148850984!GO:0015002;heme-copper terminal oxidase activity;0.0119060148850984!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0119060148850984!GO:0004129;cytochrome-c oxidase activity;0.0119060148850984!GO:0000070;mitotic sister chromatid segregation;0.0119828266569734!GO:0006270;DNA replication initiation;0.0121460433373854!GO:0007021;tubulin folding;0.0124071295225255!GO:0031970;organelle envelope lumen;0.0124615534928258!GO:0006740;NADPH regeneration;0.012582769262876!GO:0006098;pentose-phosphate shunt;0.012582769262876!GO:0050681;androgen receptor binding;0.012582769262876!GO:0000178;exosome (RNase complex);0.0126790412455715!GO:0005869;dynactin complex;0.013105476291813!GO:0016125;sterol metabolic process;0.013260138692834!GO:0006497;protein amino acid lipidation;0.013260138692834!GO:0044262;cellular carbohydrate metabolic process;0.0132634293748426!GO:0004843;ubiquitin-specific protease activity;0.0135086042793085!GO:0045892;negative regulation of transcription, DNA-dependent;0.0135086042793085!GO:0008092;cytoskeletal protein binding;0.0139866228059639!GO:0008022;protein C-terminus binding;0.0140264221849617!GO:0022411;cellular component disassembly;0.0140285897778033!GO:0007346;regulation of progression through mitotic cell cycle;0.0140285897778033!GO:0008234;cysteine-type peptidase activity;0.0141628181204879!GO:0006506;GPI anchor biosynthetic process;0.0141628181204879!GO:0005669;transcription factor TFIID complex;0.0142041719248307!GO:0030384;phosphoinositide metabolic process;0.014412517641275!GO:0006950;response to stress;0.0144818591176231!GO:0009303;rRNA transcription;0.0145838678678899!GO:0030145;manganese ion binding;0.0147762369187629!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0149578050015185!GO:0000152;nuclear ubiquitin ligase complex;0.0150398127919046!GO:0016584;nucleosome positioning;0.0150475205853411!GO:0031123;RNA 3'-end processing;0.0150855031298089!GO:0006338;chromatin remodeling;0.0152707996973071!GO:0030518;steroid hormone receptor signaling pathway;0.0157876866098918!GO:0030032;lamellipodium biogenesis;0.0160220333023146!GO:0008299;isoprenoid biosynthetic process;0.0161160372461909!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0161323151250207!GO:0030041;actin filament polymerization;0.0164649337984992!GO:0048487;beta-tubulin binding;0.0164649337984992!GO:0043189;H4/H2A histone acetyltransferase complex;0.0165189834350202!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0171723566965767!GO:0031625;ubiquitin protein ligase binding;0.0175253260734703!GO:0006505;GPI anchor metabolic process;0.0175848543644342!GO:0005773;vacuole;0.0175964780603948!GO:0005663;DNA replication factor C complex;0.0176341687358787!GO:0006378;mRNA polyadenylation;0.017819187233418!GO:0009262;deoxyribonucleotide metabolic process;0.017819187233418!GO:0015992;proton transport;0.0180477365076908!GO:0016044;membrane organization and biogenesis;0.0181048458068234!GO:0044454;nuclear chromosome part;0.0181128765074491!GO:0000209;protein polyubiquitination;0.0181688407960677!GO:0004177;aminopeptidase activity;0.0182431764600788!GO:0006118;electron transport;0.018588325170711!GO:0006541;glutamine metabolic process;0.0186198415299092!GO:0004221;ubiquitin thiolesterase activity;0.0187500107000285!GO:0006818;hydrogen transport;0.0188242011457801!GO:0046128;purine ribonucleoside metabolic process;0.0192194862794846!GO:0042278;purine nucleoside metabolic process;0.0192194862794846!GO:0035267;NuA4 histone acetyltransferase complex;0.0193715768620157!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.01971906158915!GO:0065009;regulation of a molecular function;0.0200850751031979!GO:0005862;muscle thin filament tropomyosin;0.0202873789247226!GO:0030496;midbody;0.0203525307488982!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0209485736130904!GO:0051053;negative regulation of DNA metabolic process;0.0211922344598662!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0212840934875777!GO:0006778;porphyrin metabolic process;0.0212840934875777!GO:0033013;tetrapyrrole metabolic process;0.0212840934875777!GO:0031529;ruffle organization and biogenesis;0.0217431738361752!GO:0045941;positive regulation of transcription;0.0217431738361752!GO:0006376;mRNA splice site selection;0.0217431738361752!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0217431738361752!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0218522323071604!GO:0015399;primary active transmembrane transporter activity;0.0218522323071604!GO:0032259;methylation;0.0218522323071604!GO:0033673;negative regulation of kinase activity;0.0218522323071604!GO:0006469;negative regulation of protein kinase activity;0.0218522323071604!GO:0006607;NLS-bearing substrate import into nucleus;0.0221867504577005!GO:0046112;nucleobase biosynthetic process;0.0225509826829164!GO:0008408;3'-5' exonuclease activity;0.0227993933767351!GO:0006007;glucose catabolic process;0.0229408390512117!GO:0006779;porphyrin biosynthetic process;0.0232377435945233!GO:0033014;tetrapyrrole biosynthetic process;0.0232377435945233!GO:0000084;S phase of mitotic cell cycle;0.0232492764676858!GO:0009124;nucleoside monophosphate biosynthetic process;0.0235270241232014!GO:0009123;nucleoside monophosphate metabolic process;0.0235270241232014!GO:0004448;isocitrate dehydrogenase activity;0.0235567067943886!GO:0000781;chromosome, telomeric region;0.0236134312221509!GO:0031577;spindle checkpoint;0.0237324553833992!GO:0006509;membrane protein ectodomain proteolysis;0.023753150815678!GO:0033619;membrane protein proteolysis;0.023753150815678!GO:0030508;thiol-disulfide exchange intermediate activity;0.0237948740773424!GO:0045045;secretory pathway;0.0240992268883643!GO:0008632;apoptotic program;0.024314768671431!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0244561370169492!GO:0030119;AP-type membrane coat adaptor complex;0.025217200338578!GO:0000118;histone deacetylase complex;0.0255820541556796!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.025811385559527!GO:0051348;negative regulation of transferase activity;0.0268710093573656!GO:0048144;fibroblast proliferation;0.0268841349057977!GO:0048145;regulation of fibroblast proliferation;0.0268841349057977!GO:0048146;positive regulation of fibroblast proliferation;0.026935335531283!GO:0043414;biopolymer methylation;0.0269692198435339!GO:0030125;clathrin vesicle coat;0.0270210855375573!GO:0030665;clathrin coated vesicle membrane;0.0270210855375573!GO:0006400;tRNA modification;0.0270901033861943!GO:0051320;S phase;0.0271183592542574!GO:0007004;telomere maintenance via telomerase;0.0271733069293906!GO:0031371;ubiquitin conjugating enzyme complex;0.0272275961694424!GO:0003756;protein disulfide isomerase activity;0.0273949971388299!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0273949971388299!GO:0030659;cytoplasmic vesicle membrane;0.0274475615895528!GO:0004532;exoribonuclease activity;0.0275289850325338!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0275289850325338!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0276815363696613!GO:0010257;NADH dehydrogenase complex assembly;0.0276815363696613!GO:0033108;mitochondrial respiratory chain complex assembly;0.0276815363696613!GO:0022890;inorganic cation transmembrane transporter activity;0.0276831785543945!GO:0051128;regulation of cellular component organization and biogenesis;0.0281719047726354!GO:0016790;thiolester hydrolase activity;0.0281719047726354!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.029031204833798!GO:0009119;ribonucleoside metabolic process;0.0292867910968225!GO:0000123;histone acetyltransferase complex;0.0292867910968225!GO:0030833;regulation of actin filament polymerization;0.0293057669275656!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0294481253863976!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0294481253863976!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0302394957736888!GO:0016197;endosome transport;0.0304360664090764!GO:0004523;ribonuclease H activity;0.03067344980779!GO:0044450;microtubule organizing center part;0.0307613506677031!GO:0045893;positive regulation of transcription, DNA-dependent;0.0309974721929703!GO:0000323;lytic vacuole;0.0311235787942934!GO:0005764;lysosome;0.0311235787942934!GO:0042158;lipoprotein biosynthetic process;0.0314747089691657!GO:0051537;2 iron, 2 sulfur cluster binding;0.0321293623606985!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0324280263569737!GO:0030911;TPR domain binding;0.0332431502118317!GO:0047485;protein N-terminus binding;0.0334621434758832!GO:0017134;fibroblast growth factor binding;0.0338273253715358!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0344101742257716!GO:0003887;DNA-directed DNA polymerase activity;0.0345095642357203!GO:0000726;non-recombinational repair;0.0354286653042442!GO:0005784;translocon complex;0.0355475212673856!GO:0031902;late endosome membrane;0.0359372668889052!GO:0008276;protein methyltransferase activity;0.0360387880037804!GO:0005881;cytoplasmic microtubule;0.036262291295712!GO:0006739;NADP metabolic process;0.0365879897854975!GO:0016581;NuRD complex;0.0368617952856078!GO:0005680;anaphase-promoting complex;0.0386684034265079!GO:0008097;5S rRNA binding;0.0389639020991087!GO:0022408;negative regulation of cell-cell adhesion;0.0390013920431403!GO:0006730;one-carbon compound metabolic process;0.0392921255428983!GO:0008629;induction of apoptosis by intracellular signals;0.040056799357961!GO:0006643;membrane lipid metabolic process;0.0403761089939879!GO:0000086;G2/M transition of mitotic cell cycle;0.0406165908349728!GO:0030503;regulation of cell redox homeostasis;0.0408713339721516!GO:0003702;RNA polymerase II transcription factor activity;0.041693448798358!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0421829584609888!GO:0043130;ubiquitin binding;0.0423069212053071!GO:0032182;small conjugating protein binding;0.0423069212053071!GO:0030131;clathrin adaptor complex;0.0428305923511486!GO:0051098;regulation of binding;0.0430687914785021!GO:0000097;sulfur amino acid biosynthetic process;0.0432143237652439!GO:0050178;phenylpyruvate tautomerase activity;0.0434142855047811!GO:0006984;ER-nuclear signaling pathway;0.0434142855047811!GO:0007034;vacuolar transport;0.0434142855047811!GO:0016311;dephosphorylation;0.0434142855047811!GO:0006355;regulation of transcription, DNA-dependent;0.043623517531039!GO:0016417;S-acyltransferase activity;0.0437049388243064!GO:0000793;condensed chromosome;0.0442482414825733!GO:0030522;intracellular receptor-mediated signaling pathway;0.0456204197385905!GO:0006733;oxidoreduction coenzyme metabolic process;0.046014877454948!GO:0006367;transcription initiation from RNA polymerase II promoter;0.046014877454948!GO:0042026;protein refolding;0.0462136498641515!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0462136498641515!GO:0045039;protein import into mitochondrial inner membrane;0.0462136498641515!GO:0009161;ribonucleoside monophosphate metabolic process;0.0462976164735275!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0462976164735275!GO:0006979;response to oxidative stress;0.0464025059978828!GO:0009225;nucleotide-sugar metabolic process;0.0471681411542757!GO:0046966;thyroid hormone receptor binding;0.0471928899317372!GO:0015036;disulfide oxidoreductase activity;0.0473602876260634!GO:0008017;microtubule binding;0.047590652326947!GO:0008287;protein serine/threonine phosphatase complex;0.048476577863359!GO:0051101;regulation of DNA binding;0.0484935163967387!GO:0030031;cell projection biogenesis;0.0489399356998461!GO:0004239;methionyl aminopeptidase activity;0.049330012258568 | |||
|sample_id=11450 | |sample_id=11450 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=skin | |sample_tissue=skin | ||
|top_motifs=GFI1:1.60876221053;TFDP1:1.57122860323;NKX3-1:1.32694433193;E2F1..5:1.23596829568;ALX4:1.23195864599;NKX2-2,8:1.20970737251;NFY{A,B,C}:1.20076787791;PDX1:1.19936370807;EN1,2:1.17591927955;PAX8:1.1605401392;GZF1:1.00912091909;NR3C1:1.00309778971;YY1:0.961305623334;MYB:0.826115065652;NRF1:0.814168407814;NFIX:0.808214110351;ELK1,4_GABP{A,B1}:0.798751614226;ZNF143:0.785673884976;PBX1:0.782688553435;POU1F1:0.765012244121;TOPORS:0.685360158471;SPZ1:0.577968830848;UFEwm:0.567161244598;HES1:0.560590092412;HOX{A5,B5}:0.559536084438;GFI1B:0.552905433606;SOX17:0.54544486089;RXR{A,B,G}:0.538072359138;XBP1:0.526330968065;PAX4:0.519714684256;ZNF238:0.516398445034;ZIC1..3:0.48658433384;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.486562477388;CREB1:0.479132646381;TFAP4:0.464323199182;POU2F1..3:0.439595151488;BREu{core}:0.422885147289;KLF4:0.418698944521;AHR_ARNT_ARNT2:0.388444926538;CDC5L:0.381411227537;MZF1:0.353713708683;PRRX1,2:0.343883661219;NANOG{mouse}:0.325715524209;PAX3,7:0.315346496836;NKX6-1,2:0.305787868682;TEAD1:0.280338048322;GCM1,2:0.276876739426;XCPE1{core}:0.268644937909;POU3F1..4:0.250281014298;BACH2:0.247855302987;CEBPA,B_DDIT3:0.247783107566;TBX4,5:0.244082965336;MYBL2:0.243379567497;AR:0.227285630991;HOXA9_MEIS1:0.221796993255;LEF1_TCF7_TCF7L1,2:0.213767563548;TP53:0.213641962239;FOS_FOS{B,L1}_JUN{B,D}:0.201500388778;PAX1,9:0.194911695074;HOX{A4,D4}:0.184368299821;STAT1,3:0.174289358374;NKX2-3_NKX2-5:0.169242285631;HBP1_HMGB_SSRP1_UBTF:0.161013180708;FOXQ1:0.144207065329;NFATC1..3:0.135955328325;ALX1:0.13278020702;GATA4:0.129114106889;AIRE:0.128646683992;TFAP2{A,C}:0.122734323086;NFE2L2:0.115849269683;GTF2A1,2:0.109992631721;TLX1..3_NFIC{dimer}:0.104219875565;PRDM1:0.102767025241;NR1H4:0.0893804718249;HSF1,2:0.0892914628673;PAX5:0.0821375004295;GTF2I:0.0805070813533;ATF4:0.0665718271955;CRX:0.0641798792858;NKX2-1,4:0.0588470150933;ELF1,2,4:0.0483720301006;TAL1_TCF{3,4,12}:0.0433244695232;FOXD3:0.0396869199928;HLF:0.0384024925672;SOX{8,9,10}:0.0332269803455;HNF4A_NR2F1,2:0.0267167563062;ESR1:0.0197874005243;TEF:-0.00671461307504;EVI1:-0.00788868874643;NKX3-2:-0.0134079317744;POU5F1:-0.0178838655157;ONECUT1,2:-0.0234999640181;IKZF1:-0.0273957288885;NFE2L1:-0.0354563988224;LHX3,4:-0.03663422752;FOSL2:-0.0425258083966;FOXP1:-0.0499609017413;TFAP2B:-0.0588514696377;ZFP161:-0.0610147752093;NR5A1,2:-0.0611612163419;ESRRA:-0.0692476138321;HIC1:-0.0731509895998;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.077886666371;FOX{I1,J2}:-0.079226252382;T:-0.091607812612;ATF6:-0.0933710644576;RFX1:-0.0959629880371;ZBTB16:-0.0989718896383;HNF1A:-0.106079405612;PATZ1:-0.116289268301;PITX1..3:-0.142276319716;SRF:-0.150647413358;ZBTB6:-0.165924131746;STAT5{A,B}:-0.194995766259;NFE2:-0.200074580937;TGIF1:-0.206132126481;bHLH_family:-0.207782771898;NANOG:-0.2121013858;TBP:-0.218121354625;RUNX1..3:-0.224716791808;HAND1,2:-0.251820052824;MTE{core}:-0.251825084188;EGR1..3:-0.264370625194;DMAP1_NCOR{1,2}_SMARC:-0.264448496626;RXRA_VDR{dimer}:-0.27203822293;MTF1:-0.289871806237;HIF1A:-0.293449199917;SP1:-0.296467660697;GATA6:-0.306105905633;SPI1:-0.307650766954;NFKB1_REL_RELA:-0.316805545897;ZNF384:-0.318823433448;POU6F1:-0.327609632601;MEF2{A,B,C,D}:-0.336492456659;SOX5:-0.338664120185;ADNP_IRX_SIX_ZHX:-0.345429698725;RFX2..5_RFXANK_RFXAP:-0.347583712416;ARID5B:-0.354489879145;ZNF423:-0.358230634844;MED-1{core}:-0.362052011707;ZNF148:-0.365741883561;OCT4_SOX2{dimer}:-0.369602372821;REST:-0.370964986337;HMGA1,2:-0.378894553401;SOX2:-0.397489016468;JUN:-0.401516593408;NHLH1,2:-0.403491893586;FOXM1:-0.40990381777;CUX2:-0.413765932532;EBF1:-0.424759944414;VSX1,2:-0.438645745287;ATF5_CREB3:-0.448682305706;PPARG:-0.448915285074;CDX1,2,4:-0.449168796047;IKZF2:-0.450165590016;PAX2:-0.460798045652;MAZ:-0.464692781265;TFCP2:-0.481849868429;HOX{A6,A7,B6,B7}:-0.487643533172;STAT2,4,6:-0.49523171352;SPIB:-0.497511480157;FOXA2:-0.528506795734;DBP:-0.534832278392;RBPJ:-0.535143824876;NR6A1:-0.548974882282;MYFfamily:-0.557817023546;ATF2:-0.558704177656;ETS1,2:-0.564206373121;GLI1..3:-0.569703339316;RREB1:-0.576856467781;MAFB:-0.594136316801;FOXO1,3,4:-0.603031821763;FOXP3:-0.636046246539;RORA:-0.643752069375;FOXN1:-0.648095476813;PAX6:-0.669981830731;FOXL1:-0.689728333519;BPTF:-0.69624484646;HMX1:-0.714612820005;TLX2:-0.718259248362;MYOD1:-0.73054300219;IRF7:-0.738418393554;IRF1,2:-0.758507588483;EP300:-0.761727979398;SNAI1..3:-0.784345179367;FOX{F1,F2,J1}:-0.785005628642;SMAD1..7,9:-0.802894303235;SREBF1,2:-0.842783761304;NFIL3:-0.84677293641;LMO2:-0.892731623326;ZEB1:-0.90701136869;FOX{D1,D2}:-1.17488927928 | |top_motifs=GFI1:1.60876221053;TFDP1:1.57122860323;NKX3-1:1.32694433193;E2F1..5:1.23596829568;ALX4:1.23195864599;NKX2-2,8:1.20970737251;NFY{A,B,C}:1.20076787791;PDX1:1.19936370807;EN1,2:1.17591927955;PAX8:1.1605401392;GZF1:1.00912091909;NR3C1:1.00309778971;YY1:0.961305623334;MYB:0.826115065652;NRF1:0.814168407814;NFIX:0.808214110351;ELK1,4_GABP{A,B1}:0.798751614226;ZNF143:0.785673884976;PBX1:0.782688553435;POU1F1:0.765012244121;TOPORS:0.685360158471;SPZ1:0.577968830848;UFEwm:0.567161244598;HES1:0.560590092412;HOX{A5,B5}:0.559536084438;GFI1B:0.552905433606;SOX17:0.54544486089;RXR{A,B,G}:0.538072359138;XBP1:0.526330968065;PAX4:0.519714684256;ZNF238:0.516398445034;ZIC1..3:0.48658433384;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.486562477388;CREB1:0.479132646381;TFAP4:0.464323199182;POU2F1..3:0.439595151488;BREu{core}:0.422885147289;KLF4:0.418698944521;AHR_ARNT_ARNT2:0.388444926538;CDC5L:0.381411227537;MZF1:0.353713708683;PRRX1,2:0.343883661219;NANOG{mouse}:0.325715524209;PAX3,7:0.315346496836;NKX6-1,2:0.305787868682;TEAD1:0.280338048322;GCM1,2:0.276876739426;XCPE1{core}:0.268644937909;POU3F1..4:0.250281014298;BACH2:0.247855302987;CEBPA,B_DDIT3:0.247783107566;TBX4,5:0.244082965336;MYBL2:0.243379567497;AR:0.227285630991;HOXA9_MEIS1:0.221796993255;LEF1_TCF7_TCF7L1,2:0.213767563548;TP53:0.213641962239;FOS_FOS{B,L1}_JUN{B,D}:0.201500388778;PAX1,9:0.194911695074;HOX{A4,D4}:0.184368299821;STAT1,3:0.174289358374;NKX2-3_NKX2-5:0.169242285631;HBP1_HMGB_SSRP1_UBTF:0.161013180708;FOXQ1:0.144207065329;NFATC1..3:0.135955328325;ALX1:0.13278020702;GATA4:0.129114106889;AIRE:0.128646683992;TFAP2{A,C}:0.122734323086;NFE2L2:0.115849269683;GTF2A1,2:0.109992631721;TLX1..3_NFIC{dimer}:0.104219875565;PRDM1:0.102767025241;NR1H4:0.0893804718249;HSF1,2:0.0892914628673;PAX5:0.0821375004295;GTF2I:0.0805070813533;ATF4:0.0665718271955;CRX:0.0641798792858;NKX2-1,4:0.0588470150933;ELF1,2,4:0.0483720301006;TAL1_TCF{3,4,12}:0.0433244695232;FOXD3:0.0396869199928;HLF:0.0384024925672;SOX{8,9,10}:0.0332269803455;HNF4A_NR2F1,2:0.0267167563062;ESR1:0.0197874005243;TEF:-0.00671461307504;EVI1:-0.00788868874643;NKX3-2:-0.0134079317744;POU5F1:-0.0178838655157;ONECUT1,2:-0.0234999640181;IKZF1:-0.0273957288885;NFE2L1:-0.0354563988224;LHX3,4:-0.03663422752;FOSL2:-0.0425258083966;FOXP1:-0.0499609017413;TFAP2B:-0.0588514696377;ZFP161:-0.0610147752093;NR5A1,2:-0.0611612163419;ESRRA:-0.0692476138321;HIC1:-0.0731509895998;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.077886666371;FOX{I1,J2}:-0.079226252382;T:-0.091607812612;ATF6:-0.0933710644576;RFX1:-0.0959629880371;ZBTB16:-0.0989718896383;HNF1A:-0.106079405612;PATZ1:-0.116289268301;PITX1..3:-0.142276319716;SRF:-0.150647413358;ZBTB6:-0.165924131746;STAT5{A,B}:-0.194995766259;NFE2:-0.200074580937;TGIF1:-0.206132126481;bHLH_family:-0.207782771898;NANOG:-0.2121013858;TBP:-0.218121354625;RUNX1..3:-0.224716791808;HAND1,2:-0.251820052824;MTE{core}:-0.251825084188;EGR1..3:-0.264370625194;DMAP1_NCOR{1,2}_SMARC:-0.264448496626;RXRA_VDR{dimer}:-0.27203822293;MTF1:-0.289871806237;HIF1A:-0.293449199917;SP1:-0.296467660697;GATA6:-0.306105905633;SPI1:-0.307650766954;NFKB1_REL_RELA:-0.316805545897;ZNF384:-0.318823433448;POU6F1:-0.327609632601;MEF2{A,B,C,D}:-0.336492456659;SOX5:-0.338664120185;ADNP_IRX_SIX_ZHX:-0.345429698725;RFX2..5_RFXANK_RFXAP:-0.347583712416;ARID5B:-0.354489879145;ZNF423:-0.358230634844;MED-1{core}:-0.362052011707;ZNF148:-0.365741883561;OCT4_SOX2{dimer}:-0.369602372821;REST:-0.370964986337;HMGA1,2:-0.378894553401;SOX2:-0.397489016468;JUN:-0.401516593408;NHLH1,2:-0.403491893586;FOXM1:-0.40990381777;CUX2:-0.413765932532;EBF1:-0.424759944414;VSX1,2:-0.438645745287;ATF5_CREB3:-0.448682305706;PPARG:-0.448915285074;CDX1,2,4:-0.449168796047;IKZF2:-0.450165590016;PAX2:-0.460798045652;MAZ:-0.464692781265;TFCP2:-0.481849868429;HOX{A6,A7,B6,B7}:-0.487643533172;STAT2,4,6:-0.49523171352;SPIB:-0.497511480157;FOXA2:-0.528506795734;DBP:-0.534832278392;RBPJ:-0.535143824876;NR6A1:-0.548974882282;MYFfamily:-0.557817023546;ATF2:-0.558704177656;ETS1,2:-0.564206373121;GLI1..3:-0.569703339316;RREB1:-0.576856467781;MAFB:-0.594136316801;FOXO1,3,4:-0.603031821763;FOXP3:-0.636046246539;RORA:-0.643752069375;FOXN1:-0.648095476813;PAX6:-0.669981830731;FOXL1:-0.689728333519;BPTF:-0.69624484646;HMX1:-0.714612820005;TLX2:-0.718259248362;MYOD1:-0.73054300219;IRF7:-0.738418393554;IRF1,2:-0.758507588483;EP300:-0.761727979398;SNAI1..3:-0.784345179367;FOX{F1,F2,J1}:-0.785005628642;SMAD1..7,9:-0.802894303235;SREBF1,2:-0.842783761304;NFIL3:-0.84677293641;LMO2:-0.892731623326;ZEB1:-0.90701136869;FOX{D1,D2}:-1.17488927928 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11450-119A1;search_select_hide=table117:FF:11450-119A1 | |||
}} | }} | ||
Latest revision as of 18:01, 4 June 2020
| Name: | Fibroblast - Dermal, donor4 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12052 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12052
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12052
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.366 |
| 10 | 10 | 0.348 |
| 100 | 100 | 0.927 |
| 101 | 101 | 0.387 |
| 102 | 102 | 0.54 |
| 103 | 103 | 0.217 |
| 104 | 104 | 0.799 |
| 105 | 105 | 0.979 |
| 106 | 106 | 8.33331e-5 |
| 107 | 107 | 0.0944 |
| 108 | 108 | 0.183 |
| 109 | 109 | 0.751 |
| 11 | 11 | 0.823 |
| 110 | 110 | 0.687 |
| 111 | 111 | 0.971 |
| 112 | 112 | 0.0319 |
| 113 | 113 | 0.00552 |
| 114 | 114 | 0.195 |
| 115 | 115 | 0.728 |
| 116 | 116 | 0.695 |
| 117 | 117 | 0.88 |
| 118 | 118 | 0.909 |
| 119 | 119 | 0.118 |
| 12 | 12 | 0.797 |
| 120 | 120 | 0.201 |
| 121 | 121 | 0.628 |
| 122 | 122 | 0.23 |
| 123 | 123 | 0.0414 |
| 124 | 124 | 0.253 |
| 125 | 125 | 0.819 |
| 126 | 126 | 0.78 |
| 127 | 127 | 0.297 |
| 128 | 128 | 0.0117 |
| 129 | 129 | 0.113 |
| 13 | 13 | 0.943 |
| 130 | 130 | 0.0163 |
| 131 | 131 | 0.313 |
| 132 | 132 | 0.883 |
| 133 | 133 | 0.679 |
| 134 | 134 | 0.605 |
| 135 | 135 | 0.0329 |
| 136 | 136 | 0.239 |
| 137 | 137 | 0.123 |
| 138 | 138 | 0.102 |
| 139 | 139 | 1.10283e-5 |
| 14 | 14 | 0.194 |
| 140 | 140 | 0.978 |
| 141 | 141 | 0.808 |
| 142 | 142 | 0.674 |
| 143 | 143 | 0.37 |
| 144 | 144 | 0.534 |
| 145 | 145 | 0.982 |
| 146 | 146 | 0.715 |
| 147 | 147 | 0.964 |
| 148 | 148 | 0.236 |
| 149 | 149 | 0.233 |
| 15 | 15 | 0.167 |
| 150 | 150 | 0.911 |
| 151 | 151 | 0.138 |
| 152 | 152 | 0.0594 |
| 153 | 153 | 0.218 |
| 154 | 154 | 0.546 |
| 155 | 155 | 0.0292 |
| 156 | 156 | 0.548 |
| 157 | 157 | 0.103 |
| 158 | 158 | 0.029 |
| 159 | 159 | 0.0444 |
| 16 | 16 | 0.77 |
| 160 | 160 | 0.96 |
| 161 | 161 | 0.562 |
| 162 | 162 | 0.448 |
| 163 | 163 | 0.653 |
| 164 | 164 | 0.681 |
| 165 | 165 | 0.466 |
| 166 | 166 | 0.854 |
| 167 | 167 | 0.337 |
| 168 | 168 | 0.457 |
| 169 | 169 | 0.0628 |
| 17 | 17 | 0.19 |
| 18 | 18 | 0.799 |
| 19 | 19 | 0.554 |
| 2 | 2 | 0.574 |
| 20 | 20 | 0.353 |
| 21 | 21 | 0.279 |
| 22 | 22 | 0.377 |
| 23 | 23 | 0.0209 |
| 24 | 24 | 0.857 |
| 25 | 25 | 0.736 |
| 26 | 26 | 0.973 |
| 27 | 27 | 0.514 |
| 28 | 28 | 0.555 |
| 29 | 29 | 0.795 |
| 3 | 3 | 0.539 |
| 30 | 30 | 0.758 |
| 31 | 31 | 0.647 |
| 32 | 32 | 0.839 |
| 33 | 33 | 0.444 |
| 34 | 34 | 0.306 |
| 35 | 35 | 0.502 |
| 36 | 36 | 0.339 |
| 37 | 37 | 0.396 |
| 38 | 38 | 0.262 |
| 39 | 39 | 0.794 |
| 4 | 4 | 0.232 |
| 40 | 40 | 0.211 |
| 41 | 41 | 0.129 |
| 42 | 42 | 0.741 |
| 43 | 43 | 0.236 |
| 44 | 44 | 0.806 |
| 45 | 45 | 0.0803 |
| 46 | 46 | 0.281 |
| 47 | 47 | 0.916 |
| 48 | 48 | 0.843 |
| 49 | 49 | 0.181 |
| 5 | 5 | 0.0968 |
| 50 | 50 | 0.779 |
| 51 | 51 | 0.481 |
| 52 | 52 | 0.0812 |
| 53 | 53 | 0.156 |
| 54 | 54 | 0.439 |
| 55 | 55 | 0.421 |
| 56 | 56 | 0.678 |
| 57 | 57 | 0.614 |
| 58 | 58 | 0.149 |
| 59 | 59 | 0.306 |
| 6 | 6 | 0.661 |
| 60 | 60 | 0.022 |
| 61 | 61 | 0.948 |
| 62 | 62 | 0.122 |
| 63 | 63 | 0.552 |
| 64 | 64 | 0.653 |
| 65 | 65 | 0.119 |
| 66 | 66 | 0.0387 |
| 67 | 67 | 0.75 |
| 68 | 68 | 0.995 |
| 69 | 69 | 0.883 |
| 7 | 7 | 0.336 |
| 70 | 70 | 0.00439 |
| 71 | 71 | 0.62 |
| 72 | 72 | 0.211 |
| 73 | 73 | 0.448 |
| 74 | 74 | 0.242 |
| 75 | 75 | 0.413 |
| 76 | 76 | 0.837 |
| 77 | 77 | 0.541 |
| 78 | 78 | 0.428 |
| 79 | 79 | 0.546 |
| 8 | 8 | 0.646 |
| 80 | 80 | 0.105 |
| 81 | 81 | 0.394 |
| 82 | 82 | 0.0187 |
| 83 | 83 | 0.306 |
| 84 | 84 | 0.934 |
| 85 | 85 | 0.00673 |
| 86 | 86 | 0.542 |
| 87 | 87 | 0.0993 |
| 88 | 88 | 0.492 |
| 89 | 89 | 0.0921 |
| 9 | 9 | 0.63 |
| 90 | 90 | 0.666 |
| 91 | 91 | 0.348 |
| 92 | 92 | 0.0887 |
| 93 | 93 | 0.895 |
| 94 | 94 | 0.336 |
| 95 | 95 | 0.429 |
| 96 | 96 | 0.288 |
| 97 | 97 | 0.672 |
| 98 | 98 | 0.184 |
| 99 | 99 | 0.0626 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12052
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
0002551 (fibroblast of dermis)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002067 (dermis)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000062 (human dermal fibroblast sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
