FFCP PHASE1:Hg19::chr12:24715342..24715354,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6660 | |EntrezGene=6660 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=11201 | |HGNC=11201 | ||
|TSSclassifier=strong | |||
|UniProt=P35711 | |UniProt=P35711 | ||
|association_with_transcript=25bp_to_NM_152989,uc001rfx.2,uc001rfy.2_5end | |association_with_transcript=25bp_to_NM_152989,uc001rfx.2,uc001rfy.2_5end | ||
|cluster_id=chr12:24715342..24715354,- | |||
|coexpression_cluster_id=C3268 | |||
|description=CAGE_peak_4_at_SOX5_5end | |description=CAGE_peak_4_at_SOX5_5end | ||
|id=chr12:24715342..24715354,- | |id=chr12:24715342..24715354,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!9.51e-32!115;UBERON:0001017!4.68e-21!82;UBERON:0001049!6.69e-21!57;UBERON:0005068!6.69e-21!57;UBERON:0006241!6.69e-21!57;UBERON:0007135!6.69e-21!57;UBERON:0000073!2.80e-20!94;UBERON:0001016!2.80e-20!94;UBERON:0005743!3.14e-20!86;UBERON:0000955!2.21e-19!69;UBERON:0006238!2.21e-19!69;UBERON:0002616!1.43e-18!59;UBERON:0002346!3.38e-17!90;UBERON:0003080!4.38e-17!42;UBERON:0003075!4.64e-17!86;UBERON:0007284!4.64e-17!86;UBERON:0002780!3.20e-16!41;UBERON:0001890!3.20e-16!41;UBERON:0006240!3.20e-16!41;UBERON:0001893!4.13e-16!34;UBERON:0002020!1.17e-15!34;UBERON:0003528!1.17e-15!34;UBERON:0002791!2.35e-15!33;UBERON:0001869!3.74e-15!32;UBERON:0000153!6.20e-14!129;UBERON:0007811!6.20e-14!129;UBERON:0003056!1.35e-13!61;UBERON:0000033!3.90e-13!123;UBERON:0000924!5.44e-13!173;UBERON:0006601!5.44e-13!173;UBERON:0004121!1.06e-12!169;UBERON:0000956!9.49e-12!25;UBERON:0000203!9.49e-12!25;UBERON:0002619!6.73e-10!22;UBERON:0000481!1.38e-08!347;UBERON:0001950!1.64e-08!20;UBERON:0000477!1.02e-07!286;UBERON:0000483!4.59e-07!309;UBERON:0004111!9.21e-07!241;UBERON:0000119!9.52e-07!312;UBERON:0000922!9.81e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;1.68e-09;34!UBERON:0002780;3.02e-09;41!UBERON:0001890;3.02e-09;41!UBERON:0001869;5.39e-09;32!UBERON:0002619;5.94e-09;22!UBERON:0002791;5.06e-08;32!UBERON:0001950;6.23e-08;20!UBERON:0000956;1.00e-07;25!UBERON:0000203;1.00e-07;25!UBERON:0003528;2.91e-07;34!UBERON:0002020;2.91e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002780,5.30e-12,41;UBERON:0001890,5.30e-12,41;UBERON:0003080,5.30e-12,41;UBERON:0006240,5.30e-12,41;UBERON:0001893,3.42e-11,34;UBERON:0001869,3.06e-10,32;UBERON:0003056,2.71e-09,61;UBERON:0007023,2.88e-09,114;UBERON:0002619,4.74e-09,22;UBERON:0002791,1.39e-08,32;UBERON:0000073,1.43e-08,53;UBERON:0002616,1.43e-08,53;UBERON:0003528,5.77e-08,34;UBERON:0002020,5.77e-08,34;UBERON:0001049,6.01e-08,56;UBERON:0005068,6.01e-08,56;UBERON:0006241,6.01e-08,56;UBERON:0007135,6.01e-08,56;UBERON:0001950,6.15e-08,20;UBERON:0000955,7.29e-08,68;UBERON:0006238,7.29e-08,68;UBERON:0000956,8.26e-08,25;UBERON:0000203,8.26e-08,25;UBERON:0002346,2.53e-07,86;UBERON:0003075,6.68e-07,82;UBERON:0007284,6.68e-07,82;UBERON:0001017,6.77e-07,81 | |||
|phase1_expression=0,0,0.140954404095971,0,0.446961094427288,0,0,0.631719873426831,0,0.245733936501509,0,0.218441372130172,0,0,0.662794751455832,0,0,0,0,0.246242116153576,0.204000691244253,0,0.85870796139317,0.684372125364421,0.87879847716362,0,0,0,0,0,0,0,0,0,0.92960640696362,1.27952309238679,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,0.546138611262131,1.77901850772711,0.426730222566507,0,1.14950487990897,0,0,0,1.76171156811282,0.382273228125229,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,3.40644409211845,0.756278537312543,0.221729397462564,0.43917392846563,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0.17859945656816,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0.408308342509787,0.122834317311768,0.206651562351531,0,0,0,0,0,0.125118519871964,0.277064115484183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0.982827216677626,0.590789906681404,1.7658523976586,0.983907508344908,0.171567810298526,0,0,0,0,0,0,0,0.695582429850461,0.352226082707465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190493682876507,0.381988425558278,0,0,0.205654985406647,0.300343057843917,1.14330573052231,0,0,0,0.129271715757778,3.57656445851882,0,0.26593811658487,0,0,0,0,0.428933980974443,0,0.823240336780769,0,0.710783897485092,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,1.01637849688985,0,0.773288812777695,0.670065061337395,0,0,0,0,0.49076596687656,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0.511707249066704,0,0,0,0,0,0,0,2.05461064305758,0,0,0.574072240823034,0,0.262248829918848,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,2.26690225624989,0,0.082509499920588,0,0,0,0,0.154048617114644,0.307007349452259,0.137836572484531,0.107420244868274,0.145016693914229,0,0,0,0,0,0,0,0,0.6970372701606,0,0,0,0,0,0,0.316379424718726,1.14378116354295,0,0,0,0,0.179872457583315,1.09814811894422,0.824686816419805,0,0,0,0,0,0,1.22849920267187,0.282810863907425,0,0,0,0,0,1.31178950409327,0,0.30982349809975,0,0,0.0982490410131212,0,1.77380532035299,0,0,0,0,0,0,0,2.2594512186427,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.93016358543788,0,0,0,0,0,0,0,0.562677665642051,0.111308705022906,1.81284261649436,0,1.59398390600856,1.10513566212459,0,0.511343412510774,0,0,0,0,0,0.690503839458535,0,0,0.969332746095218,0.74214478529481,1.99613798001194,0,0,4.34999745260876,0,0.254253650292766,0,0,0,0,0.885741385813839,0.723578631752448,0,0.442317039724898,0.295547618953547,0.438770794307945,0,0.139423744278603,1.46205491157214,0,0,0,0,0,0.366390373607449,0,0,0,0,0,0,0,0,0,0,0,0.424059214301822,0,0.995261931078505,0.796118080530053,0,2.6686901581256,1.85345908419754,0.939797545549098,1.14581926067151,0.802577647298789,0.468528891450678,0.182454789215666,0.19566461893209,0,0.394584402849391,0,3.36680037793539,0.63186579628488,0.300646838828985,0.103688191397247,0.664653872707185,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,0.0969890164884194,8.73735654245853,0.225980740780532,0,0,1.32952671507345,0,0.0801588202515337,0.85381197895741,0.19980960958213,0,0,5.49103993158287,0,0,0,0,0,0.611989305817931,0,0,0.958337652243951,0,0,0.525774708558629,1.67569440763353,0.916641696046735,0,0.199679000498991,0.429226048136571,0.446342914883745,1.47803639470798,0,0,0,0,0,0,0,0.795229689809303,1.90684768556206,0,0,0,0,2.32140586367385,1.51873891645062,0,0.315222829196793,0.314727528809989,0,0,0,1.42939065274673,0,0,0,0,0,0,0,0,0,1.02586563574658,0,0.387848869084652,0.79339561045614,0,0,0.854299300541557,2.82967749179399,0.414239055347196,0,0.592834895693833,0.60896299190448,0,7.07223144380316,4.2617281983859,3.06345576763462,4.91808946064707,0,0,0.366078794705889,1.502291168478,0,0.332787154610557,0.869349641179368,0.830091809617385,0,1.06154382279153,0,0,0,0,0,0,0,0.189403005275089,0,0,0.228840068396924,0,0.310874401165561,0.147855149989634,0.318593534327405,1.34940933649081,0.310525913752519,0.414706207840855,0,0.521745061811734,0,0,0,0.363697318405119,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829550616910385,0,0,0.163565394255844,0,0,0,0.19998739585493,0,0,0,0,0,0,0.127894371303652,0.107824811396682,0.629063767423586,0,0,0.212574920101683,1.73510069962603,0,0,0.0788617450012534,0,0,0.3062454773532,1.15612605173627,0,0.798169295285756,0.82046545696302,4.78936222821264,0.691572524642179,0.484426936895553,1.42769420259154,0,0,0,0,0,0,0,1.27857558193737,0,0,0,0.163771917510097,0,1.2156765231311,0,0.206686796501184,1.20490039368423,8.75159694429151,0,0.496211178389294,0,0,1.07140367175657,1.68141861109412,0,0,0.620916591138472,0,0.857440047187092,0.883606528698812,1.24968269769413,0,0,0.627944742804112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| ||
|short_description=p4@SOX5 | |short_description=p4@SOX5 | ||
}} | }} |
Latest revision as of 21:13, 17 September 2015
Short description: | p4@SOX5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SOX5_5end |
Coexpression cluster: | C3268_parietal_temporal_pineal_occipital_gastrointestinal_mature_extraskeletal |
Association with transcript: | 25bp_to_NM_152989, uc001rfx.2, uc001rfy.2_5end |
EntrezGene: | SOX5 |
HGNC: | 11201 |
UniProt: | P35711 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of forebrain | 5.30e-12 | 41 |
forebrain | 5.30e-12 | 41 |
anterior neural tube | 5.30e-12 | 41 |
future forebrain | 5.30e-12 | 41 |
telencephalon | 3.42e-11 | 34 |
cerebral hemisphere | 3.06e-10 | 32 |
pre-chordal neural plate | 2.71e-09 | 61 |
adult organism | 2.88e-09 | 114 |
regional part of cerebral cortex | 4.74e-09 | 22 |
regional part of telencephalon | 1.39e-08 | 32 |
regional part of nervous system | 1.43e-08 | 53 |
regional part of brain | 1.43e-08 | 53 |
brain grey matter | 5.77e-08 | 34 |
gray matter | 5.77e-08 | 34 |
neural tube | 6.01e-08 | 56 |
neural rod | 6.01e-08 | 56 |
future spinal cord | 6.01e-08 | 56 |
neural keel | 6.01e-08 | 56 |
neocortex | 6.15e-08 | 20 |
brain | 7.29e-08 | 68 |
future brain | 7.29e-08 | 68 |
cerebral cortex | 8.26e-08 | 25 |
pallium | 8.26e-08 | 25 |
neurectoderm | 2.53e-07 | 86 |
neural plate | 6.68e-07 | 82 |
presumptive neural plate | 6.68e-07 | 82 |
central nervous system | 6.77e-07 | 81 |