FFCP PHASE1:Mm9::chr4:6917606..6917681,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=252838 | |EntrezGene=252838 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=118 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENSMUST00000150082,uc008rxu.1_5end | |association_with_transcript=0bp_to_ENSMUST00000150082,uc008rxu.1_5end | ||
|cluster_id=chr4:6917606..6917681,- | |||
|description=CAGE_peak_1_at_Tox_5end | |description=CAGE_peak_1_at_Tox_5end | ||
|id=chr4:6917606..6917681,- | |id=chr4:6917606..6917681,- | ||
|ontology_enrichment_celltype=CL:0000084!5.13e-08!11;CL:0000827!5.13e-08!11;CL:0000791!7.14e-07!9;CL:0000789!7.14e-07!9;CL:0002420!7.14e-07!9;CL:0002419!7.14e-07!9;CL:0000790!7.14e-07!9 | |ontology_enrichment_celltype=CL:0000084!5.13e-08!11;CL:0000827!5.13e-08!11;CL:0000791!7.14e-07!9;CL:0000789!7.14e-07!9;CL:0002420!7.14e-07!9;CL:0002419!7.14e-07!9;CL:0000790!7.14e-07!9 | ||
|ontology_enrichment_celltype_v019_2=CL:0000084,4.41e-08,11;CL:0000827,4.41e-08,11;CL:0000791,6.30e-07,9;CL:0000789,6.30e-07,9;CL:0002420,6.30e-07,9;CL:0002419,6.30e-07,9;CL:0000790,6.30e-07,9;CL:0000542,9.57e-07,13;CL:0000051,9.57e-07,13 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!3.58e-17!94;UBERON:0007811!7.40e-15!86;UBERON:0004177!9.04e-10!29;UBERON:0003056!1.26e-09!49;UBERON:0002370!1.75e-09!23;UBERON:0000974!1.75e-09!23;UBERON:0004807!1.75e-09!23;UBERON:0005058!1.75e-09!23;UBERON:0003351!1.75e-09!23;UBERON:0009113!1.75e-09!23;UBERON:0003295!1.75e-09!23;UBERON:0009722!1.75e-09!23;UBERON:0005562!1.75e-09!23;UBERON:0007690!1.75e-09!23;UBERON:0003408!7.24e-09!24;UBERON:0006562!1.56e-08!24;UBERON:0001557!1.56e-08!24;UBERON:0001042!1.56e-08!24;UBERON:0008814!1.56e-08!24;UBERON:0009145!1.56e-08!24;UBERON:0002780!8.28e-08!39;UBERON:0001890!8.28e-08!39;UBERON:0006240!8.28e-08!39;UBERON:0003080!1.44e-07!40;UBERON:0000033!5.32e-07!63 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000153,1.03e-12,43;UBERON:0007811,2.52e-11,36;UBERON:0004177,3.43e-10,29;UBERON:0005057,3.43e-10,29;UBERON:0002370,6.22e-10,23;UBERON:0000974,6.22e-10,23;UBERON:0004807,6.22e-10,23;UBERON:0005058,6.22e-10,23;UBERON:0003351,6.22e-10,23;UBERON:0009113,6.22e-10,23;UBERON:0003295,6.22e-10,23;UBERON:0009722,6.22e-10,23;UBERON:0005562,6.22e-10,23;UBERON:0007690,6.22e-10,23;UBERON:0003056,8.39e-10,49;UBERON:0003408,2.73e-09,24;UBERON:0006562,7.13e-09,24;UBERON:0001557,7.13e-09,24;UBERON:0001042,7.13e-09,24;UBERON:0008814,7.13e-09,24;UBERON:0009145,7.13e-09,24;UBERON:0002780,5.78e-08,39;UBERON:0001890,5.78e-08,39;UBERON:0006240,5.78e-08,39;UBERON:0003080,1.02e-07,40 | |||
|phase1_expression=10.089377367602,0.348975407639361,0.454999239389536,0.60492842261366,1.50268718983904,3.02182689441402,3.03696432774183,43.256313352928,121.64145593904,140.438715793196,17.4642327590015,10.2906085103984,47.0802007310816,43.8850420143367,0.999329285446988,1.01237633694913,0.699561878128147,2.99689057090326,3.56497527374921,1.69755860719212,7.65389611359628,33.2624686522966,18.2839852397255,2.3998863419011,1.83527424853736,0.57423196411502,1.7230479846363,2.37018355954478,1.90023419456374,4.53654233567875,3.10422714917427,0,0,0,5.77703239502549,3.32469290716985,5.71674197534634,0,0,0,0,0,0,0,0.202753862439029,0,2.34717403304412,0.218025156380447,0,0.194429899074283,0.55994568650145,0,0.167782606057736,46.423177088726,23.5265659399725,0,0.286533439938757,1.03134418455488,6.87875966922632,8.99284664762456,3.80298842103708,3.04960078862219,1.77858959222228,0,0.988866362566974,0,1.49800055259202,0.384218305321555,7.05089363697648,9.99043943654511,5.67877395648731,3.42781181284564,3.75476519617743,6.85948475603743,5.46319184803947,3.67687514644008,4.40463523997555,2.042997409363,4.45458946443106,15.5625819521629,15.6443870560121,14.5855743755893,2.23346399201105,4.50210088025344,4.12555268997387,2.94628585473668,4.8406371471695,5.77838282058432,0.302904773332736,0.755715601067855,3.76823835312181,0.860423876981386,0.679971333707751,0,0,2.24013443548668,2.94933282276679,0,0,0,16.0561498545416,0,0,0,0,0.253359865475099,0,5.48082622651488,47.1266948237853,1.7813056687779,2.25530924795977,0,0.230615497256059,0.753613202763113,2.23418543557839,0.125666591329675,0.247194967734374,0.722996784599558,0,5.50007289821191,2.42925670306433,0.969750506270444,1.86391761218122,0,0.209446706813455,6.13096932500619,1.43778149407104,0,0.508280908292259,2.39665023047716,3.20250421973039,4.64921102817598,6.60532416730651,8.43861009190091,3.1168206683934,3.40706652442291,4.68461073711455,2.11491850037158,2.0217820674694,1.89397670297827,8.71806967850115,7.12696523743766,7.74267158163002,6.93242162044289,14.0835553243249,12.811372028485,8.99536555773397,2.58703370739016,2.58681591519411,8.13156144721623,9.50136070485324,5.91828477554452,6.67313398141435,4.179025998266,6.37924622864625,2.9855140022774,0,0,0.284163499395593,3.10688658803253,3.28336483973535,2.52086886045421,2.13070262026689,1.18058539048442,1.3884040159864,2.09280550275367,0.804820204198858,1.75148013550754,0.493679549740441,1.31333971263276,0.648550476366846,1.60819986167866,1.75640092232841,0.671032093801859,2.73376933133365,5.04232600658494,5.28670052774077,3.17340679996253,5.11891801284562,6.73486348395272,6.95884291139304,7.46229041106367,7.11609740303585,7.22857379227725,5.69434873853414,5.10566759644434,4.02136334080431,9.35095418593409,6.82374304916921,2.69645822596266,4.32276099749388,6.77080329064848,0.948339504765408,2.74196430263349,5.63538678365402,2.64746726198909,1.16371492300575,2.17421041659988,2.02356918797623,0.738050739898011,0.470996183524124,0.246794327843601,2.07516838961004,0.667380422864376,1.57247196090562,0.899448449539415,1.82574109249653,0.482354319504834,0.763877555344259,1.43848068725405,3.72911021582581,1.37280706594041,2.87536413054709,4.83783231969054,3.12037673114561,3.03094653536534,1.4351793081753,1.92977408545347,2.21703828199926,3.03186258832776,2.93336957595647,2.20668611507745,2.11221223459652,3.35012514883632,1.6663054862021,3.90267295715598,1.7339865851681,1.99318220683897,2.23236676120482,1.80249646187312,3.28101465545202,2.02508682014116,0,0,1.47529281905711,2.75936746304733,2.0871576698413,1.64096361229084,0,0.757412781613119,1.57754109708128,1.17131623288992,3.66219776145758,2.86762557543062,3.11918143715352,2.83076530788832,3.64329631507405,2.33804686329049,3.55759000151871,3.53453448063988,2.2710413633323,1.78065603667255,2.11753047159649,5.44401405809367,3.98235415019888,5.34117399540959,3.32555912661226,3.01768127609437,0.590603785761546,3.07435147943927,10.3371317267288,3.99887102425256,3.56497378384721,3.16036757935816,2.10837217149998,1.03135543248187,4.08527526904546,13.6846431463796,6.85601024048599,9.43082954139006,7.80297028026004,5.88617098086833,5.75921572107423,4.56697423671899,0,0.21183207086382,1.54369878638473,1.31909002353184,2.58343082713449,1.44751019827574,0.238744688006273,1.14898629821543,6.12109756922687,0.741701208042039,5.46786818553129,13.6215332855727,8.33375373163703,2.63715839806567,4.10082683163076,2.51655990527175,11.3885548095883,10.4963589242744,10.6413979829406,2.86401185404534,6.48488786841327,6.70954241518601,6.91234181259528,5.43629569637619,5.67742665740062,4.18079473792944,6.61227645802687,3.14107130380836,5.83267379813068,1.86401793926078,2.25477175473676,1.49516546043979,3.14371131868485,1.16670713006429,3.61647505737647,2.87225413334323,3.75543163666413,6.38001485735356,7.86445083192831,4.59009829569411,3.16833006883652,85.6390136902363,9.32535990334755,13.3524244314275,27.9329769402259,36.8794993075012,60.001769143942,59.6169429619045,62.7680490491953,59.9740712691997,60.8892385173449,77.9386411107777,96.5807598130946,92.7482153412776,109.396780441949,0.453460767230423,0,0,0,0.386379188064381,1.12609485270709,2.38097111547445,0.428736758158132,2.00628841614145,6.21227026878773,8.28585425712918,14.3223878359849,7.04598047609119,9.59115527678899,6.0431511791176,8.10027000278167,7.20513925158753,9.9691329976525,7.24864436452548,4.67043064128795,11.9707462020309,7.5122786531819,4.132814190161,2.93458427679175,1.83843508450014,3.33370091702423,1.64828045791115,3.20919209591815,2.52697211763797,2.5347929989024,3.77252682772152,4.40115085108447,4.28968521112624,4.53740204749345,2.85776214769844,3.36064545240081,5.40145817298374,3.70877310722976,3.38557516309114,2.40008476669791,3.19456451086807,3.33810665926249,2.76158191601424,3.29382831453657,4.39995961036718,3.65855945745545,2.89376682581627,4.34573164306758,1.12228454331548,2.01679530811096,4.0386837773981,2.04615521584845,3.71848418846318,4.82266527452853,6.99469618226249,2.33931608445408,5.15690529715916,5.92993829413414,2.42650561031467,2.55054619182464 | |phase1_expression=10.089377367602,0.348975407639361,0.454999239389536,0.60492842261366,1.50268718983904,3.02182689441402,3.03696432774183,43.256313352928,121.64145593904,140.438715793196,17.4642327590015,10.2906085103984,47.0802007310816,43.8850420143367,0.999329285446988,1.01237633694913,0.699561878128147,2.99689057090326,3.56497527374921,1.69755860719212,7.65389611359628,33.2624686522966,18.2839852397255,2.3998863419011,1.83527424853736,0.57423196411502,1.7230479846363,2.37018355954478,1.90023419456374,4.53654233567875,3.10422714917427,0,0,0,5.77703239502549,3.32469290716985,5.71674197534634,0,0,0,0,0,0,0,0.202753862439029,0,2.34717403304412,0.218025156380447,0,0.194429899074283,0.55994568650145,0,0.167782606057736,46.423177088726,23.5265659399725,0,0.286533439938757,1.03134418455488,6.87875966922632,8.99284664762456,3.80298842103708,3.04960078862219,1.77858959222228,0,0.988866362566974,0,1.49800055259202,0.384218305321555,7.05089363697648,9.99043943654511,5.67877395648731,3.42781181284564,3.75476519617743,6.85948475603743,5.46319184803947,3.67687514644008,4.40463523997555,2.042997409363,4.45458946443106,15.5625819521629,15.6443870560121,14.5855743755893,2.23346399201105,4.50210088025344,4.12555268997387,2.94628585473668,4.8406371471695,5.77838282058432,0.302904773332736,0.755715601067855,3.76823835312181,0.860423876981386,0.679971333707751,0,0,2.24013443548668,2.94933282276679,0,0,0,16.0561498545416,0,0,0,0,0.253359865475099,0,5.48082622651488,47.1266948237853,1.7813056687779,2.25530924795977,0,0.230615497256059,0.753613202763113,2.23418543557839,0.125666591329675,0.247194967734374,0.722996784599558,0,5.50007289821191,2.42925670306433,0.969750506270444,1.86391761218122,0,0.209446706813455,6.13096932500619,1.43778149407104,0,0.508280908292259,2.39665023047716,3.20250421973039,4.64921102817598,6.60532416730651,8.43861009190091,3.1168206683934,3.40706652442291,4.68461073711455,2.11491850037158,2.0217820674694,1.89397670297827,8.71806967850115,7.12696523743766,7.74267158163002,6.93242162044289,14.0835553243249,12.811372028485,8.99536555773397,2.58703370739016,2.58681591519411,8.13156144721623,9.50136070485324,5.91828477554452,6.67313398141435,4.179025998266,6.37924622864625,2.9855140022774,0,0,0.284163499395593,3.10688658803253,3.28336483973535,2.52086886045421,2.13070262026689,1.18058539048442,1.3884040159864,2.09280550275367,0.804820204198858,1.75148013550754,0.493679549740441,1.31333971263276,0.648550476366846,1.60819986167866,1.75640092232841,0.671032093801859,2.73376933133365,5.04232600658494,5.28670052774077,3.17340679996253,5.11891801284562,6.73486348395272,6.95884291139304,7.46229041106367,7.11609740303585,7.22857379227725,5.69434873853414,5.10566759644434,4.02136334080431,9.35095418593409,6.82374304916921,2.69645822596266,4.32276099749388,6.77080329064848,0.948339504765408,2.74196430263349,5.63538678365402,2.64746726198909,1.16371492300575,2.17421041659988,2.02356918797623,0.738050739898011,0.470996183524124,0.246794327843601,2.07516838961004,0.667380422864376,1.57247196090562,0.899448449539415,1.82574109249653,0.482354319504834,0.763877555344259,1.43848068725405,3.72911021582581,1.37280706594041,2.87536413054709,4.83783231969054,3.12037673114561,3.03094653536534,1.4351793081753,1.92977408545347,2.21703828199926,3.03186258832776,2.93336957595647,2.20668611507745,2.11221223459652,3.35012514883632,1.6663054862021,3.90267295715598,1.7339865851681,1.99318220683897,2.23236676120482,1.80249646187312,3.28101465545202,2.02508682014116,0,0,1.47529281905711,2.75936746304733,2.0871576698413,1.64096361229084,0,0.757412781613119,1.57754109708128,1.17131623288992,3.66219776145758,2.86762557543062,3.11918143715352,2.83076530788832,3.64329631507405,2.33804686329049,3.55759000151871,3.53453448063988,2.2710413633323,1.78065603667255,2.11753047159649,5.44401405809367,3.98235415019888,5.34117399540959,3.32555912661226,3.01768127609437,0.590603785761546,3.07435147943927,10.3371317267288,3.99887102425256,3.56497378384721,3.16036757935816,2.10837217149998,1.03135543248187,4.08527526904546,13.6846431463796,6.85601024048599,9.43082954139006,7.80297028026004,5.88617098086833,5.75921572107423,4.56697423671899,0,0.21183207086382,1.54369878638473,1.31909002353184,2.58343082713449,1.44751019827574,0.238744688006273,1.14898629821543,6.12109756922687,0.741701208042039,5.46786818553129,13.6215332855727,8.33375373163703,2.63715839806567,4.10082683163076,2.51655990527175,11.3885548095883,10.4963589242744,10.6413979829406,2.86401185404534,6.48488786841327,6.70954241518601,6.91234181259528,5.43629569637619,5.67742665740062,4.18079473792944,6.61227645802687,3.14107130380836,5.83267379813068,1.86401793926078,2.25477175473676,1.49516546043979,3.14371131868485,1.16670713006429,3.61647505737647,2.87225413334323,3.75543163666413,6.38001485735356,7.86445083192831,4.59009829569411,3.16833006883652,85.6390136902363,9.32535990334755,13.3524244314275,27.9329769402259,36.8794993075012,60.001769143942,59.6169429619045,62.7680490491953,59.9740712691997,60.8892385173449,77.9386411107777,96.5807598130946,92.7482153412776,109.396780441949,0.453460767230423,0,0,0,0.386379188064381,1.12609485270709,2.38097111547445,0.428736758158132,2.00628841614145,6.21227026878773,8.28585425712918,14.3223878359849,7.04598047609119,9.59115527678899,6.0431511791176,8.10027000278167,7.20513925158753,9.9691329976525,7.24864436452548,4.67043064128795,11.9707462020309,7.5122786531819,4.132814190161,2.93458427679175,1.83843508450014,3.33370091702423,1.64828045791115,3.20919209591815,2.52697211763797,2.5347929989024,3.77252682772152,4.40115085108447,4.28968521112624,4.53740204749345,2.85776214769844,3.36064545240081,5.40145817298374,3.70877310722976,3.38557516309114,2.40008476669791,3.19456451086807,3.33810665926249,2.76158191601424,3.29382831453657,4.39995961036718,3.65855945745545,2.89376682581627,4.34573164306758,1.12228454331548,2.01679530811096,4.0386837773981,2.04615521584845,3.71848418846318,4.82266527452853,6.99469618226249,2.33931608445408,5.15690529715916,5.92993829413414,2.42650561031467,2.55054619182464 | ||
|short_description=p1@Tox | |short_description=p1@Tox | ||
}} | }} |
Latest revision as of 05:00, 27 September 2015
Short description: | p1@Tox |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tox_5end |
Coexpression cluster: | MCL_coexpression_mm9:118 |
Association with transcript: | 0bp_to_ENSMUST00000150082, uc008rxu.1_5end |
EntrezGene: | Tox |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 4.41e-08 | 11 |
pro-T cell | 4.41e-08 | 11 |
mature alpha-beta T cell | 6.30e-07 | 9 |
alpha-beta T cell | 6.30e-07 | 9 |
immature T cell | 6.30e-07 | 9 |
mature T cell | 6.30e-07 | 9 |
immature alpha-beta T cell | 6.30e-07 | 9 |
lymphocyte | 9.57e-07 | 13 |
common lymphoid progenitor | 9.57e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
anterior region of body | 1.03e-12 | 43 |
craniocervical region | 2.52e-11 | 36 |
hemopoietic organ | 3.43e-10 | 29 |
immune organ | 3.43e-10 | 29 |
thymus | 6.22e-10 | 23 |
neck | 6.22e-10 | 23 |
respiratory system epithelium | 6.22e-10 | 23 |
hemolymphoid system gland | 6.22e-10 | 23 |
pharyngeal epithelium | 6.22e-10 | 23 |
thymic region | 6.22e-10 | 23 |
pharyngeal gland | 6.22e-10 | 23 |
entire pharyngeal arch endoderm | 6.22e-10 | 23 |
thymus primordium | 6.22e-10 | 23 |
early pharyngeal endoderm | 6.22e-10 | 23 |
pre-chordal neural plate | 8.39e-10 | 49 |
gland of gut | 2.73e-09 | 24 |
pharynx | 7.13e-09 | 24 |
upper respiratory tract | 7.13e-09 | 24 |
chordate pharynx | 7.13e-09 | 24 |
pharyngeal arch system | 7.13e-09 | 24 |
pharyngeal region of foregut | 7.13e-09 | 24 |
regional part of forebrain | 5.78e-08 | 39 |
forebrain | 5.78e-08 | 39 |
future forebrain | 5.78e-08 | 39 |
anterior neural tube | 1.02e-07 | 40 |