FFCP PHASE1:Hg19::chr6:56557942..56557959,-: Difference between revisions
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|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000306;2.43e-08;4!CL:0002222;2.43e-08;4!CL:0002224;2.43e-08;4!CL:0000243;1.17e-07;15!CL:0000125;1.17e-07;15!CL:0000095;6.01e-07;17 | |ontology_enrichment_celltype_v019=CL:0000306;2.43e-08;4!CL:0002222;2.43e-08;4!CL:0002224;2.43e-08;4!CL:0000243;1.17e-07;15!CL:0000125;1.17e-07;15!CL:0000095;6.01e-07;17 | ||
|ontology_enrichment_celltype_v019_2=CL:0000306,2.61e-08,4;CL:0002222,2.61e-08,4;CL:0002224,2.61e-08,4;CL:0000243,1.17e-07,15;CL:0000125,1.17e-07,15;CL:0000030,1.17e-07,15;CL:0000339,1.17e-07,15;CL:0000095,6.01e-07,17;CL:0000123,6.01e-07,17 | |||
|ontology_enrichment_development_v019=UBERON:0006238;2.55e-11;10!UBERON:0003056;8.17e-11;3!CL:0000339;1.17e-07;15 | |ontology_enrichment_development_v019=UBERON:0006238;2.55e-11;10!UBERON:0003056;8.17e-11;3!CL:0000339;1.17e-07;15 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3093;1.85e-10;11 | |ontology_enrichment_disease_v019=DOID:3093;1.85e-10;11 | ||
|ontology_enrichment_disease_v019_2=DOID:3093,1.85e-10,11 | |||
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|ontology_enrichment_uberon_v019=UBERON:0001905;1.13e-57;2!UBERON:0002757;1.13e-57;2!UBERON:0010134;1.13e-57;2!UBERON:0005408;1.13e-57;2!UBERON:0001899;1.13e-57;2!UBERON:0003296;1.78e-29;4!UBERON:0010133;1.78e-29;4!UBERON:0002784;1.78e-29;4!UBERON:0001894;2.46e-17;7!UBERON:0002360;2.37e-15;2!UBERON:0000094;2.37e-15;2!UBERON:0010743;2.37e-15;2!UBERON:0000970;2.10e-13;20!UBERON:0002104;8.39e-13;21!UBERON:0000020;9.39e-12;23!UBERON:0001032;2.70e-11;24!UBERON:0004456;2.70e-11;24!UBERON:0010077;2.43e-08;4!UBERON:0005389;2.43e-08;4!UBERON:0000484;2.43e-08;4!UBERON:0000965;2.43e-08;4!UBERON:0001803;2.43e-08;4!UBERON:0000966;5.38e-07;5!UBERON:0005388;5.38e-07;5!UBERON:0001802;5.38e-07;5!UBERON:0000019;6.38e-07;19!UBERON:0000047;6.38e-07;19!UBERON:0004088;6.38e-07;19!UBERON:0010230;6.38e-07;19 | |ontology_enrichment_uberon_v019=UBERON:0001905;1.13e-57;2!UBERON:0002757;1.13e-57;2!UBERON:0010134;1.13e-57;2!UBERON:0005408;1.13e-57;2!UBERON:0001899;1.13e-57;2!UBERON:0003296;1.78e-29;4!UBERON:0010133;1.78e-29;4!UBERON:0002784;1.78e-29;4!UBERON:0001894;2.46e-17;7!UBERON:0002360;2.37e-15;2!UBERON:0000094;2.37e-15;2!UBERON:0010743;2.37e-15;2!UBERON:0000970;2.10e-13;20!UBERON:0002104;8.39e-13;21!UBERON:0000020;9.39e-12;23!UBERON:0001032;2.70e-11;24!UBERON:0004456;2.70e-11;24!UBERON:0010077;2.43e-08;4!UBERON:0005389;2.43e-08;4!UBERON:0000484;2.43e-08;4!UBERON:0000965;2.43e-08;4!UBERON:0001803;2.43e-08;4!UBERON:0000966;5.38e-07;5!UBERON:0005388;5.38e-07;5!UBERON:0001802;5.38e-07;5!UBERON:0000019;6.38e-07;19!UBERON:0000047;6.38e-07;19!UBERON:0004088;6.38e-07;19!UBERON:0010230;6.38e-07;19 | ||
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| ||
|short_description=p20@DST | |short_description=p20@DST | ||
}} | }} |
Revision as of 09:25, 17 November 2012
Short description: | p20@DST |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_20_at_DST_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | 141bp_to_ENST00000521104, uc003pde.2_5end |
EntrezGene: | 100652766,667 |
HGNC: | 1090 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
crystallin accumulating cell | 2.61e-08 | 4 |
vertebrate lens cell | 2.61e-08 | 4 |
lens epithelial cell | 2.61e-08 | 4 |
glial cell (sensu Vertebrata) | 1.17e-07 | 15 |
glial cell | 1.17e-07 | 15 |
glioblast | 1.17e-07 | 15 |
glioblast (sensu Vertebrata) | 1.17e-07 | 15 |
neuron associated cell | 6.01e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 6.01e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
pineal body | 1.13e-57 | 2 |
regional part of epithalamus | 1.13e-57 | 2 |
secretory circumventricular organ | 1.13e-57 | 2 |
circumventricular organ | 1.13e-57 | 2 |
epithalamus | 1.13e-57 | 2 |
gland of diencephalon | 1.78e-29 | 4 |
neuroendocrine gland | 1.78e-29 | 4 |
regional part of diencephalon | 1.78e-29 | 4 |
diencephalon | 2.46e-17 | 7 |
future diencephalon | 2.46e-17 | 7 |
meninx | 2.05e-15 | 2 |
membrane organ | 2.05e-15 | 2 |
meningeal cluster | 2.05e-15 | 2 |
eye | 8.73e-13 | 21 |
visual system | 8.73e-13 | 21 |
sense organ | 2.80e-11 | 24 |
sensory system | 2.80e-11 | 24 |
entire sense organ system | 2.80e-11 | 24 |
central nervous system | 6.78e-09 | 81 |
cuboidal epithelium | 2.61e-08 | 4 |
transparent eye structure | 2.61e-08 | 4 |
simple cuboidal epithelium | 2.61e-08 | 4 |
cranial placode | 2.61e-08 | 4 |
lens of camera-type eye | 2.61e-08 | 4 |
epithelium of lens | 2.61e-08 | 4 |
lens placode | 2.61e-08 | 4 |
lens vesicle | 2.61e-08 | 4 |
nervous system | 4.75e-08 | 89 |
pre-chordal neural plate | 8.15e-08 | 61 |
brain | 5.48e-07 | 68 |
future brain | 5.48e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 1.85e-10 | 11 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.