FFCP PHASE1:Mm9::chr17:29144750..29144775,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=106504|HGNC=|MCL_coexpression_id=33|UniProt=|association_with_transcript=65bp_to_ENSMUST00000145298_5end|description=CAGE_peak_2_at_Stk38_5end|id=chr17:29144750..29144775,-|ontology_enrichment_celltype=CL:0000542!1.66e-07!13;CL:0000051!1.66e-07!13;CL:0000838!2.39e-07!12;CL:0000084!7.82e-07!11;CL:0000827!7.82e-07!11;CL:0000988!9.09e-07!32;CL:0002032!9.09e-07!32;CL:0000037!9.09e-07!32;CL:0000566!9.09e-07!32;CL:0000837!9.09e-07!32|ontology_enrichment_celltype_v019_2=CL:0000542,1.45e-07,13;CL:0000051,1.45e-07,13;CL:0000838,2.10e-07,12;CL:0000084,6.96e-07,11;CL:0000827,6.96e-07,11;CL:0000988,8.76e-07,32;CL:0002032,8.76e-07,32;CL:0000037,8.76e-07,32;CL:0000837,8.76e-07,32|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!5.69e-13!29;UBERON:0002370!1.69e-11!23;UBERON:0000974!1.69e-11!23;UBERON:0004807!1.69e-11!23;UBERON:0005058!1.69e-11!23;UBERON:0003351!1.69e-11!23;UBERON:0009113!1.69e-11!23;UBERON:0003295!1.69e-11!23;UBERON:0009722!1.69e-11!23;UBERON:0005562!1.69e-11!23;UBERON:0007690!1.69e-11!23;UBERON:0002390!4.61e-11!45;UBERON:0003061!4.61e-11!45;UBERON:0002193!7.05e-11!48;UBERON:0003408!1.17e-10!24;UBERON:0006562!3.46e-10!24;UBERON:0001557!3.46e-10!24;UBERON:0001042!3.46e-10!24;UBERON:0008814!3.46e-10!24;UBERON:0009145!3.46e-10!24;UBERON:0000153!3.38e-08!94;UBERON:0000065!4.26e-08!41;UBERON:0000072!6.96e-08!27;UBERON:0001004!1.14e-07!42;UBERON:0007811!4.56e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0004177,2.90e-13,29;UBERON:0005057,2.90e-13,29;UBERON:0002370,8.77e-12,23;UBERON:0000974,8.77e-12,23;UBERON:0004807,8.77e-12,23;UBERON:0005058,8.77e-12,23;UBERON:0003351,8.77e-12,23;UBERON:0009113,8.77e-12,23;UBERON:0003295,8.77e-12,23;UBERON:0009722,8.77e-12,23;UBERON:0005562,8.77e-12,23;UBERON:0007690,8.77e-12,23;UBERON:0002390,2.87e-11,45;UBERON:0003061,2.87e-11,45;UBERON:0002193,4.45e-11,48;UBERON:0002405,4.45e-11,48;UBERON:0003408,6.35e-11,24;UBERON:0006562,1.45e-10,24;UBERON:0001557,1.45e-10,24;UBERON:0001042,1.45e-10,24;UBERON:0008814,1.45e-10,24;UBERON:0009145,1.45e-10,24;UBERON:0000153,2.69e-10,43;UBERON:0007811,7.43e-10,36;UBERON:0000077,8.51e-09,35;UBERON:0000065,2.22e-08,41;UBERON:0000072,3.30e-08,27;UBERON:0001004,6.14e-08,42|phase1_expression=2.88267924788629,0.348975407639361,0,1.20985684522732,0.500895729946347,0.839396359559449,1.16806320297763,16.5277854005218,23.7932940436317,33.7052917903671,3.08192342805909,3.74929147278081,22.2560948910567,22.6418842265203,2.99798785634096,4.656931149966,0.699561878128147,11.987562283613,11.1062691220648,11.0341309467488,4.76242424845991,11.6170412905036,5.74639536105658,1.11994695955385,2.06468352960453,0,0,0.215471232685889,0.950117097281869,0,0.221730510655305,0.635030673459631,0.61506478758457,0,1.44425809875637,1.82858109894342,0.816677425049476,6.27797446105362,6.2506827561904,6.28228492768558,1.76469446409304,4.09827290975067,3.39857247121808,0.755380907853464,0.811015449756117,1.10128051297009,0.782391344348039,1.09012578190223,0.439372365468944,1.36100929351998,0.699932108126813,0,9.2280433331755,33.3666585325218,60.832977644786,1.54355661621568,3.43840127926508,0.515672092277442,5.05791152148994,3.70293685490423,3.80298842103708,0.338844532069132,0,1.3498495759221,0,0.7104801149461,0.599200221036809,1.53687322128622,4.76972216618997,6.21027316325777,4.20649922702764,1.99955689082663,3.97563373712904,8.32937434661688,10.6388472830242,9.19218786610021,2.20231761998777,1.78762273319263,0.921639199537461,3.95658863190582,5.48925861614458,6.77187381723788,0.837548997004143,0.56276261003168,1.5279824777681,2.94628585473668,4.12877874317399,3.16879057903011,0.605809546665472,1.28471652181535,2.31891590961342,0,0,0.539703191637817,1.29955283489534,2.24013443548668,2.24711072210803,1.1930122580464,0.519572009205738,0.35333957451034,1.40843419776681,2.56652954828636,7.64415719119937,0,1.5154372870785,1.01343946190039,0.505524445014783,3.08296475241462,16.572024553419,0.445326417194474,1.73485326766136,1.82679286987285,0.461230994512117,0.904335843315735,1.17588707135705,0.251333182659351,2.71914464507811,1.59059292611903,4.42305275974937,1.94120219936891,5.74187947997023,4.363877278217,3.72783522436244,1.46390398505774,1.04723353406728,0.766371165625774,9.82484020948546,7.7987355029143,9.27612657633372,1.04853447583376,0.457500602818626,4.27224797183739,1.04294592115366,1.79000820131231,0.83115217823824,1.78465389374533,1.42575109390443,4.60305791257344,1.0108910337347,1.05220927943237,5.85541993332167,4.59804208866946,4.50155324513373,3.61691562805716,3.74200745332303,3.84341160854549,4.40398105430725,1.03481348295606,3.44908788692548,3.9712276835242,4.04687585577082,3.06874025398605,1.66828349535359,4.52727816478817,1.64625709126355,2.7864797354589,4.21327912387941,9.26452465612975,8.24074148247219,1.24275463521301,4.45599513964083,2.34080679899319,2.13070262026689,1.96764231747404,2.00547246753592,2.55787339225449,1.87791380979733,1.63471479314037,1.97471819896177,1.64167464079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| ||
|EntrezGene=106504 | |||
|HGNC= | |||
|MCL_coexpression_id=33 | |||
|UniProt= | |||
|association_with_transcript=65bp_to_ENSMUST00000145298_5end | |||
|description=CAGE_peak_2_at_Stk38_5end | |||
|id=chr17:29144750..29144775,- | |||
|ontology_enrichment_celltype=CL:0000542!1.66e-07!13;CL:0000051!1.66e-07!13;CL:0000838!2.39e-07!12;CL:0000084!7.82e-07!11;CL:0000827!7.82e-07!11;CL:0000988!9.09e-07!32;CL:0002032!9.09e-07!32;CL:0000037!9.09e-07!32;CL:0000566!9.09e-07!32;CL:0000837!9.09e-07!32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.45e-07,13;CL:0000051,1.45e-07,13;CL:0000838,2.10e-07,12;CL:0000084,6.96e-07,11;CL:0000827,6.96e-07,11;CL:0000988,8.76e-07,32;CL:0002032,8.76e-07,32;CL:0000037,8.76e-07,32;CL:0000837,8.76e-07,32 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!5.69e-13!29;UBERON:0002370!1.69e-11!23;UBERON:0000974!1.69e-11!23;UBERON:0004807!1.69e-11!23;UBERON:0005058!1.69e-11!23;UBERON:0003351!1.69e-11!23;UBERON:0009113!1.69e-11!23;UBERON:0003295!1.69e-11!23;UBERON:0009722!1.69e-11!23;UBERON:0005562!1.69e-11!23;UBERON:0007690!1.69e-11!23;UBERON:0002390!4.61e-11!45;UBERON:0003061!4.61e-11!45;UBERON:0002193!7.05e-11!48;UBERON:0003408!1.17e-10!24;UBERON:0006562!3.46e-10!24;UBERON:0001557!3.46e-10!24;UBERON:0001042!3.46e-10!24;UBERON:0008814!3.46e-10!24;UBERON:0009145!3.46e-10!24;UBERON:0000153!3.38e-08!94;UBERON:0000065!4.26e-08!41;UBERON:0000072!6.96e-08!27;UBERON:0001004!1.14e-07!42;UBERON:0007811!4.56e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,2.90e-13,29;UBERON:0005057,2.90e-13,29;UBERON:0002370,8.77e-12,23;UBERON:0000974,8.77e-12,23;UBERON:0004807,8.77e-12,23;UBERON:0005058,8.77e-12,23;UBERON:0003351,8.77e-12,23;UBERON:0009113,8.77e-12,23;UBERON:0003295,8.77e-12,23;UBERON:0009722,8.77e-12,23;UBERON:0005562,8.77e-12,23;UBERON:0007690,8.77e-12,23;UBERON:0002390,2.87e-11,45;UBERON:0003061,2.87e-11,45;UBERON:0002193,4.45e-11,48;UBERON:0002405,4.45e-11,48;UBERON:0003408,6.35e-11,24;UBERON:0006562,1.45e-10,24;UBERON:0001557,1.45e-10,24;UBERON:0001042,1.45e-10,24;UBERON:0008814,1.45e-10,24;UBERON:0009145,1.45e-10,24;UBERON:0000153,2.69e-10,43;UBERON:0007811,7.43e-10,36;UBERON:0000077,8.51e-09,35;UBERON:0000065,2.22e-08,41;UBERON:0000072,3.30e-08,27;UBERON:0001004,6.14e-08,42 | |||
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| |||
|short_description=p2@Stk38 | |||
}} |
Revision as of 13:58, 13 September 2013
Short description: | p2@Stk38 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Stk38_5end |
Coexpression cluster: | MCL_coexpression_mm9:33 |
Association with transcript: | 65bp_to_ENSMUST00000145298_5end |
EntrezGene: | Stk38 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.45e-07 | 13 |
common lymphoid progenitor | 1.45e-07 | 13 |
lymphoid lineage restricted progenitor cell | 2.10e-07 | 12 |
T cell | 6.96e-07 | 11 |
pro-T cell | 6.96e-07 | 11 |
hematopoietic cell | 8.76e-07 | 32 |
hematopoietic oligopotent progenitor cell | 8.76e-07 | 32 |
hematopoietic stem cell | 8.76e-07 | 32 |
hematopoietic multipotent progenitor cell | 8.76e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 2.90e-13 | 29 |
immune organ | 2.90e-13 | 29 |
thymus | 8.77e-12 | 23 |
neck | 8.77e-12 | 23 |
respiratory system epithelium | 8.77e-12 | 23 |
hemolymphoid system gland | 8.77e-12 | 23 |
pharyngeal epithelium | 8.77e-12 | 23 |
thymic region | 8.77e-12 | 23 |
pharyngeal gland | 8.77e-12 | 23 |
entire pharyngeal arch endoderm | 8.77e-12 | 23 |
thymus primordium | 8.77e-12 | 23 |
early pharyngeal endoderm | 8.77e-12 | 23 |
hematopoietic system | 2.87e-11 | 45 |
blood island | 2.87e-11 | 45 |
hemolymphoid system | 4.45e-11 | 48 |
immune system | 4.45e-11 | 48 |
gland of gut | 6.35e-11 | 24 |
pharynx | 1.45e-10 | 24 |
upper respiratory tract | 1.45e-10 | 24 |
chordate pharynx | 1.45e-10 | 24 |
pharyngeal arch system | 1.45e-10 | 24 |
pharyngeal region of foregut | 1.45e-10 | 24 |
anterior region of body | 2.69e-10 | 43 |
craniocervical region | 7.43e-10 | 36 |
mixed endoderm/mesoderm-derived structure | 8.51e-09 | 35 |
respiratory tract | 2.22e-08 | 41 |
segment of respiratory tract | 3.30e-08 | 27 |
respiratory system | 6.14e-08 | 42 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.