FFCP PHASE1:Mm9::chr15:103284213..103284291,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=105855|HGNC=|MCL_coexpression_id=165|UniProt=Q8K1X4|association_with_transcript=0bp_to_ENSMUST00000047405,NM_153505,uc007xyf.1,uc012aak.1_5end|description=CAGE_peak_1_at_Nckap1l_5end|id=chr15:103284213..103284291,+|ontology_enrichment_celltype=CL:0000988!3.20e-11!32;CL:0002032!3.20e-11!32;CL:0000037!3.20e-11!32;CL:0000566!3.20e-11!32;CL:0000837!3.20e-11!32;CL:0002031!4.82e-09!25;CL:0000738!2.27e-08!17;CL:0002087!2.27e-08!17;CL:0000838!1.21e-07!12;CL:0000084!5.11e-07!11;CL:0000827!5.11e-07!11|ontology_enrichment_celltype_v019_2=CL:0000988,3.28e-11,32;CL:0002032,3.28e-11,32;CL:0000037,3.28e-11,32;CL:0000837,3.28e-11,32;CL:0002031,5.02e-09,25;CL:0000738,2.15e-08,17;CL:0002087,2.15e-08,17;CL:0000838,1.16e-07,12;CL:0000084,4.88e-07,11;CL:0000827,4.88e-07,11|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!3.67e-19!48;UBERON:0002405!1.28e-18!70;UBERON:0002390!9.05e-18!45;UBERON:0003061!9.05e-18!45;UBERON:0004177!8.22e-10!29;UBERON:0005057!1.09e-09!51;UBERON:0003081!5.01e-09!88;UBERON:0002371!5.26e-09!16;UBERON:0001041!2.00e-08!92;UBERON:0001474!2.44e-08!22;UBERON:0004765!2.44e-08!22;UBERON:0001434!2.44e-08!22;UBERON:0000077!3.91e-08!97;UBERON:0000926!9.97e-08!193;UBERON:0004120!9.97e-08!193;UBERON:0006603!9.97e-08!193;UBERON:0003408!1.18e-07!24;UBERON:0002370!2.29e-07!23;UBERON:0000974!2.29e-07!23;UBERON:0004807!2.29e-07!23;UBERON:0005058!2.29e-07!23;UBERON:0003351!2.29e-07!23;UBERON:0009113!2.29e-07!23;UBERON:0003295!2.29e-07!23;UBERON:0009722!2.29e-07!23;UBERON:0005562!2.29e-07!23;UBERON:0007690!2.29e-07!23;UBERON:0006562!3.26e-07!24;UBERON:0001557!3.26e-07!24;UBERON:0001042!3.26e-07!24;UBERON:0008814!3.26e-07!24;UBERON:0009145!3.26e-07!24;UBERON:0002204!9.92e-07!32|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.03e-19,48;UBERON:0002405,2.03e-19,48;UBERON:0002390,5.10e-18,45;UBERON:0003061,5.10e-18,45;UBERON:0004177,5.22e-10,29;UBERON:0005057,5.22e-10,29;UBERON:0002371,4.95e-09,16;UBERON:0003081,1.12e-08,87;UBERON:0001474,2.02e-08,22;UBERON:0004765,2.02e-08,22;UBERON:0001434,2.02e-08,22;UBERON:0001041,2.19e-08,80;UBERON:0000077,3.46e-08,35;UBERON:0003408,7.79e-08,24;UBERON:0002370,1.52e-07,23;UBERON:0000974,1.52e-07,23;UBERON:0004807,1.52e-07,23;UBERON:0005058,1.52e-07,23;UBERON:0003351,1.52e-07,23;UBERON:0009113,1.52e-07,23;UBERON:0003295,1.52e-07,23;UBERON:0009722,1.52e-07,23;UBERON:0005562,1.52e-07,23;UBERON:0007690,1.52e-07,23;UBERON:0006562,2.19e-07,24;UBERON:0001557,2.19e-07,24;UBERON:0001042,2.19e-07,24;UBERON:0008814,2.19e-07,24;UBERON:0009145,2.19e-07,24;UBERON:0002204,6.41e-07,32|phase1_expression=1.92178616525753,0,0,0,0,0.16787927191189,0,98.5210957859227,57.5825873600317,58.0480025278544,32.5314139628459,36.8547374558454,101.008430659411,99.834099562495,34.6434152288289,44.1396082909821,26.5833513688696,149.844528545163,171.804385307991,145.141260914926,8.1641558545027,80.7235433263197,77.3151375851249,23.198901305044,21.564472420314,0,0.430761996159075,0.215471232685889,1.90023419456374,4.03248207615889,2.43903561720835,1.27006134691926,0.61506478758457,0,0,0,0,310.969001637522,209.397872332379,286.367487953668,298.233364431724,285.51301271263,262.175590636823,0,0,0,0.782391344348039,0,0,0.388859798148567,0.699932108126813,0,148.487606361097,89.2195434673954,96.4589203538872,1.02903774414379,9.16907007804022,4.64104883049698,0.809265843438391,0.528990979272033,0,0,0,55.7937824714467,103.830968069532,46.1812074714965,18.5752068521411,13.831858991576,0.829516898467821,1.35005938331691,0.210324961351382,1.71390590642282,2.42955395046775,0.979926393719632,1.53352753629178,1.83843757322004,5.50579404996943,6.12899222808901,4.45458946443106,0.659431438650969,0.823388792421687,3.12548022334056,3.90856198601933,5.6276261003168,4.88954392885792,2.94628585473668,4.8406371471695,1.3047961207771,2.87759534666099,0.302286240427142,1.44932244350839,7.74381489283248,0,0,1.29955283489534,0,15.0275529540974,0,0,0.35333957451034,0,0,0,0,0,0,0,12.2176751299394,162.354053046777,17.2192881315197,4.3371331691534,5.48037860961854,3.45923245884088,2.26083960828934,6.82014501387088,3.76999773989026,2.22475470960936,15.9059292611903,67.2304019481904,15.5296175949513,34.4512768798214,28.6076399349781,1.86391761218122,1.46390398505774,3.56059401582874,9.19645398750929,91.0594946244994,57.5906621753671,87.9325971345608,2.84602214869163,4.57500602818627,1.00523481690292,5.9100268865374,5.37002460393694,4.57133698031032,4.86723789203273,4.78645010096487,41.9251490956013,4.29628689337247,4.8401626853889,1.43132487258974,0.919608417733892,1.80062129805349,1.65775299619287,2.38127747029647,2.94661556655154,2.52994656311268,2.32833033665114,1.72454394346274,0.945530400839096,1.58356011747554,3.5071317188412,4.17070873838397,5.92028683087683,6.99659263787008,2.38841120182192,61.0925472962514,72.314761899235,70.7567113495026,1.03562886267751,3.04883877975425,2.34080679899319,2.13070262026689,1.77087808572663,1.23413690309903,1.62773761325285,0.26827340139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| ||
|EntrezGene=105855 | |||
|HGNC= | |||
|MCL_coexpression_id=165 | |||
|UniProt=Q8K1X4 | |||
|association_with_transcript=0bp_to_ENSMUST00000047405,NM_153505,uc007xyf.1,uc012aak.1_5end | |||
|description=CAGE_peak_1_at_Nckap1l_5end | |||
|id=chr15:103284213..103284291,+ | |||
|ontology_enrichment_celltype=CL:0000988!3.20e-11!32;CL:0002032!3.20e-11!32;CL:0000037!3.20e-11!32;CL:0000566!3.20e-11!32;CL:0000837!3.20e-11!32;CL:0002031!4.82e-09!25;CL:0000738!2.27e-08!17;CL:0002087!2.27e-08!17;CL:0000838!1.21e-07!12;CL:0000084!5.11e-07!11;CL:0000827!5.11e-07!11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,3.28e-11,32;CL:0002032,3.28e-11,32;CL:0000037,3.28e-11,32;CL:0000837,3.28e-11,32;CL:0002031,5.02e-09,25;CL:0000738,2.15e-08,17;CL:0002087,2.15e-08,17;CL:0000838,1.16e-07,12;CL:0000084,4.88e-07,11;CL:0000827,4.88e-07,11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!3.67e-19!48;UBERON:0002405!1.28e-18!70;UBERON:0002390!9.05e-18!45;UBERON:0003061!9.05e-18!45;UBERON:0004177!8.22e-10!29;UBERON:0005057!1.09e-09!51;UBERON:0003081!5.01e-09!88;UBERON:0002371!5.26e-09!16;UBERON:0001041!2.00e-08!92;UBERON:0001474!2.44e-08!22;UBERON:0004765!2.44e-08!22;UBERON:0001434!2.44e-08!22;UBERON:0000077!3.91e-08!97;UBERON:0000926!9.97e-08!193;UBERON:0004120!9.97e-08!193;UBERON:0006603!9.97e-08!193;UBERON:0003408!1.18e-07!24;UBERON:0002370!2.29e-07!23;UBERON:0000974!2.29e-07!23;UBERON:0004807!2.29e-07!23;UBERON:0005058!2.29e-07!23;UBERON:0003351!2.29e-07!23;UBERON:0009113!2.29e-07!23;UBERON:0003295!2.29e-07!23;UBERON:0009722!2.29e-07!23;UBERON:0005562!2.29e-07!23;UBERON:0007690!2.29e-07!23;UBERON:0006562!3.26e-07!24;UBERON:0001557!3.26e-07!24;UBERON:0001042!3.26e-07!24;UBERON:0008814!3.26e-07!24;UBERON:0009145!3.26e-07!24;UBERON:0002204!9.92e-07!32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.03e-19,48;UBERON:0002405,2.03e-19,48;UBERON:0002390,5.10e-18,45;UBERON:0003061,5.10e-18,45;UBERON:0004177,5.22e-10,29;UBERON:0005057,5.22e-10,29;UBERON:0002371,4.95e-09,16;UBERON:0003081,1.12e-08,87;UBERON:0001474,2.02e-08,22;UBERON:0004765,2.02e-08,22;UBERON:0001434,2.02e-08,22;UBERON:0001041,2.19e-08,80;UBERON:0000077,3.46e-08,35;UBERON:0003408,7.79e-08,24;UBERON:0002370,1.52e-07,23;UBERON:0000974,1.52e-07,23;UBERON:0004807,1.52e-07,23;UBERON:0005058,1.52e-07,23;UBERON:0003351,1.52e-07,23;UBERON:0009113,1.52e-07,23;UBERON:0003295,1.52e-07,23;UBERON:0009722,1.52e-07,23;UBERON:0005562,1.52e-07,23;UBERON:0007690,1.52e-07,23;UBERON:0006562,2.19e-07,24;UBERON:0001557,2.19e-07,24;UBERON:0001042,2.19e-07,24;UBERON:0008814,2.19e-07,24;UBERON:0009145,2.19e-07,24;UBERON:0002204,6.41e-07,32 | |||
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| |||
|short_description=p1@Nckap1l | |||
}} |
Revision as of 10:11, 13 September 2013
Short description: | p1@Nckap1l |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Nckap1l_5end |
Coexpression cluster: | MCL_coexpression_mm9:165 |
Association with transcript: | 0bp_to_ENSMUST00000047405, NM_153505, uc007xyf.1, uc012aak.1_5end |
EntrezGene: | Nckap1l |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 3.28e-11 | 32 |
hematopoietic oligopotent progenitor cell | 3.28e-11 | 32 |
hematopoietic stem cell | 3.28e-11 | 32 |
hematopoietic multipotent progenitor cell | 3.28e-11 | 32 |
hematopoietic lineage restricted progenitor cell | 5.02e-09 | 25 |
leukocyte | 2.15e-08 | 17 |
nongranular leukocyte | 2.15e-08 | 17 |
lymphoid lineage restricted progenitor cell | 1.16e-07 | 12 |
T cell | 4.88e-07 | 11 |
pro-T cell | 4.88e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 2.03e-19 | 48 |
immune system | 2.03e-19 | 48 |
hematopoietic system | 5.10e-18 | 45 |
blood island | 5.10e-18 | 45 |
hemopoietic organ | 5.22e-10 | 29 |
immune organ | 5.22e-10 | 29 |
bone marrow | 4.95e-09 | 16 |
lateral plate mesoderm | 1.12e-08 | 87 |
bone element | 2.02e-08 | 22 |
skeletal element | 2.02e-08 | 22 |
skeletal system | 2.02e-08 | 22 |
foregut | 2.19e-08 | 80 |
mixed endoderm/mesoderm-derived structure | 3.46e-08 | 35 |
gland of gut | 7.79e-08 | 24 |
thymus | 1.52e-07 | 23 |
neck | 1.52e-07 | 23 |
respiratory system epithelium | 1.52e-07 | 23 |
hemolymphoid system gland | 1.52e-07 | 23 |
pharyngeal epithelium | 1.52e-07 | 23 |
thymic region | 1.52e-07 | 23 |
pharyngeal gland | 1.52e-07 | 23 |
entire pharyngeal arch endoderm | 1.52e-07 | 23 |
thymus primordium | 1.52e-07 | 23 |
early pharyngeal endoderm | 1.52e-07 | 23 |
pharynx | 2.19e-07 | 24 |
upper respiratory tract | 2.19e-07 | 24 |
chordate pharynx | 2.19e-07 | 24 |
pharyngeal arch system | 2.19e-07 | 24 |
pharyngeal region of foregut | 2.19e-07 | 24 |
musculoskeletal system | 6.41e-07 | 32 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.