FFCP PHASE1:Mm9::chr2:24790639..24790657,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=215705|HGNC=|UniProt=|association_with_transcript=7bp_to_ENSMUST00000129784,ENSMUST00000155953_5end|description=CAGE_peak_2_at_Arrdc1_5end|id=chr2:24790639..24790657,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000084,6.92e-07,11;CL:0000827,6.92e-07,11|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001007!6.52e-09!128;UBERON:0001555!6.52e-09!128;UBERON:0007026!6.52e-09!128;UBERON:0001004!7.24e-09!42;UBERON:0000065!1.31e-08!41;UBERON:0004119!2.18e-08!130;UBERON:0000925!2.18e-08!130;UBERON:0006595!2.18e-08!130;UBERON:0004921!4.18e-08!126;UBERON:0004185!4.18e-08!126;UBERON:0005178!7.52e-08!17;UBERON:0005181!7.52e-08!17;UBERON:0002224!7.52e-08!17;UBERON:0000915!7.52e-08!17;UBERON:0008947!7.52e-08!17;UBERON:0003258!7.52e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0001007,8.52e-12,116;UBERON:0001555,8.52e-12,116;UBERON:0007026,8.52e-12,116;UBERON:0004119,2.76e-11,118;UBERON:0000925,2.76e-11,118;UBERON:0006595,2.76e-11,118;UBERON:0001004,3.70e-11,42;UBERON:0000065,8.84e-11,41;UBERON:0004921,1.31e-10,114;UBERON:0005178,4.21e-10,17;UBERON:0005181,4.21e-10,17;UBERON:0002224,4.21e-10,17;UBERON:0000915,4.21e-10,17;UBERON:0008947,4.21e-10,17;UBERON:0003258,4.21e-10,17;UBERON:0002048,2.62e-07,14;UBERON:0000117,2.62e-07,14;UBERON:0000171,2.62e-07,14;UBERON:0000170,2.62e-07,14;UBERON:0005597,2.62e-07,14;UBERON:0000118,2.62e-07,14|phase1_expression=0.480446541314382,1.04692622291808,1.81999695755814,0.90739263392049,0.500895729946347,4.02910252588535,3.03696432774183,2.7115897922731,1.40788722151667,1.40438715793196,1.02730780935303,0.319088635981346,2.9104124088305,2.62261207256992,0.666219523631325,0.607425802169478,1.39912375625629,0.630924330716475,0.959801035240171,0.42438965179803,0.850432901510698,6.85107563286109,1.82839852397255,3.03985603307473,4.12936705920906,2.29692785646008,1.7230479846363,4.09395342103189,1.90023419456374,1.00812051903972,3.54768817048488,0,0,0,1.44425809875637,0.664938581433969,2.04169356262369,0.418531630736908,0.7813353445238,1.0470474879476,1.17646297606203,0.683045484958446,1.45653105909346,0.125896817975577,0.202753862439029,0,0.782391344348039,0,0.439372365468944,0.58328969722285,0,0,0.838913030288682,2.17608642603403,2.35265659399725,0.257259436035947,0,0,0.606949382578793,2.64495489636016,0.633831403506179,0.338844532069132,0,0,0,1.4209602298922,0,0.384218305321555,0.103689612308478,0.135005938331691,0.210324961351382,1.14260393761521,1.76694832761291,0.244981598429908,0.383381884072945,0,1.10115880999389,0.510749352340751,1.0752457327937,0.923204014111357,1.00636407962651,0.52091337055676,0.558365998002762,1.12552522006336,1.37518422999129,0.883885756421003,1.42371680799103,1.4911955666024,0.151452386666368,0.302286240427142,0.289864488701678,0,0,0,0,0,0,0.340860645156116,0.519572009205738,0.70667914902068,0.985903938436763,0,0,0,6.061749148314,5.57391704045217,5.05524445014783,0.11418387971906,1.8125651855302,0.148442139064825,0.346970653532272,0,0.230615497256059,0.301445281105245,0.117588707135705,0.125666591329675,1.97755974187499,0.144599356919912,0.884610551949874,0.161766849947409,0.220841518460394,0,5.59175283654366,0.878342391034642,1.67557365450764,1.53274233125155,1.91704199209472,2.99951365496704,2.1601938602421,0.748953197024114,0,0.879580464790051,0.521472960576829,0.255715457330331,0.62336413367868,0.811206315338788,1.01839363850316,0.870848794270651,1.0108910337347,0,0,0,0,0.30140963567143,0.476255494059295,0.2562274405697,0.374806898238915,0.258703370739016,0.215567992932842,0,0.351902248327898,0.219195732427575,0.556094498451196,0,0.205782136407943,0.59710280045548,1.40442637462647,2.57347907114715,1.70498099637356,0,0.234526059981096,0,0.23674473558521,0.393528463494808,0.154267112887378,0,0,0.233530684734339,0.16455984991348,0.164167464079095,0,0,0,0,0.630869845692382,0.92614151141356,2.31293148088659,0.528901133327089,0,0.232236671860439,1.03093969057675,0.605050573870028,0.889512175379481,0.570676878337677,1.42358718463353,0.658795818896044,1.50801125280162,0.795825888164603,0.974820435595601,2.69645822596266,0.864552199498777,1.99141273254367,0.948339504765408,0.456994050438915,1.1270773567308,0.203651327845314,0.775809948670503,0.771494018793504,0.569128834118316,0.590440591918409,0.941992367048249,1.23397163921801,0,0.166845105716094,0.589676985339609,0.449724224769707,0.405720242777006,0,0.50925170356284,0.575392274901621,0.648540907100142,0.274561413188081,0,0.372140947668503,0.624075346229121,0.252578877947112,0.179397413521912,0,2.03228509183265,0.568474235311454,0.651859905768103,1.01847051465113,3.28566347603903,3.35012514883632,2.14239276797412,4.87834119644497,1.10344600874334,1.55025282754142,1.59454768657487,1.63863314715738,2.41758974612254,3.47157740595628,0,0.54390568381871,0.983528546038072,0.827810238914197,0.481651769963376,0.468846746368813,0.327869890753351,0,0.94652465824877,0,0,0.238968797952552,0.222798674082394,0,0,0.584511715822624,0.7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| ||
|EntrezGene=215705 | |||
|HGNC= | |||
|UniProt= | |||
|association_with_transcript=7bp_to_ENSMUST00000129784,ENSMUST00000155953_5end | |||
|description=CAGE_peak_2_at_Arrdc1_5end | |||
|id=chr2:24790639..24790657,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,6.92e-07,11;CL:0000827,6.92e-07,11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001007!6.52e-09!128;UBERON:0001555!6.52e-09!128;UBERON:0007026!6.52e-09!128;UBERON:0001004!7.24e-09!42;UBERON:0000065!1.31e-08!41;UBERON:0004119!2.18e-08!130;UBERON:0000925!2.18e-08!130;UBERON:0006595!2.18e-08!130;UBERON:0004921!4.18e-08!126;UBERON:0004185!4.18e-08!126;UBERON:0005178!7.52e-08!17;UBERON:0005181!7.52e-08!17;UBERON:0002224!7.52e-08!17;UBERON:0000915!7.52e-08!17;UBERON:0008947!7.52e-08!17;UBERON:0003258!7.52e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,8.52e-12,116;UBERON:0001555,8.52e-12,116;UBERON:0007026,8.52e-12,116;UBERON:0004119,2.76e-11,118;UBERON:0000925,2.76e-11,118;UBERON:0006595,2.76e-11,118;UBERON:0001004,3.70e-11,42;UBERON:0000065,8.84e-11,41;UBERON:0004921,1.31e-10,114;UBERON:0005178,4.21e-10,17;UBERON:0005181,4.21e-10,17;UBERON:0002224,4.21e-10,17;UBERON:0000915,4.21e-10,17;UBERON:0008947,4.21e-10,17;UBERON:0003258,4.21e-10,17;UBERON:0002048,2.62e-07,14;UBERON:0000117,2.62e-07,14;UBERON:0000171,2.62e-07,14;UBERON:0000170,2.62e-07,14;UBERON:0005597,2.62e-07,14;UBERON:0000118,2.62e-07,14 | |||
|phase1_expression=0.480446541314382,1.04692622291808,1.81999695755814,0.90739263392049,0.500895729946347,4.02910252588535,3.03696432774183,2.7115897922731,1.40788722151667,1.40438715793196,1.02730780935303,0.319088635981346,2.9104124088305,2.62261207256992,0.666219523631325,0.607425802169478,1.39912375625629,0.630924330716475,0.959801035240171,0.42438965179803,0.850432901510698,6.85107563286109,1.82839852397255,3.03985603307473,4.12936705920906,2.29692785646008,1.7230479846363,4.09395342103189,1.90023419456374,1.00812051903972,3.54768817048488,0,0,0,1.44425809875637,0.664938581433969,2.04169356262369,0.418531630736908,0.7813353445238,1.0470474879476,1.17646297606203,0.683045484958446,1.45653105909346,0.125896817975577,0.202753862439029,0,0.782391344348039,0,0.439372365468944,0.58328969722285,0,0,0.838913030288682,2.17608642603403,2.35265659399725,0.257259436035947,0,0,0.606949382578793,2.64495489636016,0.633831403506179,0.338844532069132,0,0,0,1.4209602298922,0,0.384218305321555,0.103689612308478,0.135005938331691,0.210324961351382,1.14260393761521,1.76694832761291,0.244981598429908,0.383381884072945,0,1.10115880999389,0.510749352340751,1.0752457327937,0.923204014111357,1.00636407962651,0.52091337055676,0.558365998002762,1.12552522006336,1.37518422999129,0.883885756421003,1.42371680799103,1.4911955666024,0.151452386666368,0.302286240427142,0.289864488701678,0,0,0,0,0,0,0.340860645156116,0.519572009205738,0.70667914902068,0.985903938436763,0,0,0,6.061749148314,5.57391704045217,5.05524445014783,0.11418387971906,1.8125651855302,0.148442139064825,0.346970653532272,0,0.230615497256059,0.301445281105245,0.117588707135705,0.125666591329675,1.97755974187499,0.144599356919912,0.884610551949874,0.161766849947409,0.220841518460394,0,5.59175283654366,0.878342391034642,1.67557365450764,1.53274233125155,1.91704199209472,2.99951365496704,2.1601938602421,0.748953197024114,0,0.879580464790051,0.521472960576829,0.255715457330331,0.62336413367868,0.811206315338788,1.01839363850316,0.870848794270651,1.0108910337347,0,0,0,0,0.30140963567143,0.476255494059295,0.2562274405697,0.374806898238915,0.258703370739016,0.215567992932842,0,0.351902248327898,0.219195732427575,0.556094498451196,0,0.205782136407943,0.59710280045548,1.40442637462647,2.57347907114715,1.70498099637356,0,0.234526059981096,0,0.23674473558521,0.393528463494808,0.154267112887378,0,0,0.233530684734339,0.16455984991348,0.164167464079095,0,0,0,0,0.630869845692382,0.92614151141356,2.31293148088659,0.528901133327089,0,0.232236671860439,1.03093969057675,0.605050573870028,0.889512175379481,0.570676878337677,1.42358718463353,0.658795818896044,1.50801125280162,0.795825888164603,0.974820435595601,2.69645822596266,0.864552199498777,1.99141273254367,0.948339504765408,0.456994050438915,1.1270773567308,0.203651327845314,0.775809948670503,0.771494018793504,0.569128834118316,0.590440591918409,0.941992367048249,1.23397163921801,0,0.166845105716094,0.589676985339609,0.449724224769707,0.405720242777006,0,0.50925170356284,0.575392274901621,0.648540907100142,0.274561413188081,0,0.372140947668503,0.624075346229121,0.252578877947112,0.179397413521912,0,2.03228509183265,0.568474235311454,0.651859905768103,1.01847051465113,3.28566347603903,3.35012514883632,2.14239276797412,4.87834119644497,1.10344600874334,1.55025282754142,1.59454768657487,1.63863314715738,2.41758974612254,3.47157740595628,0,0.54390568381871,0.983528546038072,0.827810238914197,0.481651769963376,0.468846746368813,0.327869890753351,0,0.94652465824877,0,0,0.238968797952552,0.222798674082394,0,0,0.584511715822624,0.790575555893047,0.321321316421807,0.567760340833074,0.35613120733451,0.488660878060728,0.494910368917606,0,0.971122544619926,0,1.13163047853539,0.295301892880773,0.614870295887855,1.29214146584111,0.727067458955011,1.06949213515416,0.316036757935816,2.10837217149998,0,0.340439605753788,0,0.905510786479282,0.643011105094777,0.354680467284547,0,0.822745103010605,0.608929898229199,0.469343416127421,0,1.54369878638473,0.32977250588296,0.645857706783622,0.542816324353403,0.716234064018819,0.656563598980245,1.7488850197791,0.556275906031529,0.170870880797853,0.412773735926445,0.555583582109135,0.188368457004691,0.410082683163076,0.457556346413045,4.07948231985253,3.07893195112048,3.45499934511059,3.81868247206045,0.790839983952838,0.813277868507395,1.51207477150522,1.88179466413022,1.31017538247707,1.48350781023303,2.72756403893609,4.18809507174447,1.68499465279331,1.24267862617385,0,0.299033092087958,0.165458490457098,0.194451188344048,0,0.168956125490778,0.469428954583016,0.13020438484395,0.314578033277133,0,0.288030006257865,0.632022241256357,1.62180172232131,1.33524244314275,1.16928740680016,1.43221356533985,1.78813219303138,0.600977247599844,1.03382669022204,1.00966449948148,1.21930890648,0.907435666231565,1.46186821109629,0.962118416403295,1.05189211963412,0.680191150845634,0.221985953374065,0.179427713218951,0.167884616364078,0.386379188064381,0.93841237725591,1.83151624267265,2.78678892802786,4.01257683228291,1.1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| |||
|short_description=p2@Arrdc1 | |||
}} | |||
Revision as of 23:23, 13 September 2013
| Short description: | p2@Arrdc1 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_2_at_Arrdc1_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 7bp_to_ENSMUST00000129784, ENSMUST00000155953_5end |
| EntrezGene: | Arrdc1 |
| Link to Zenbu: | ZENBU |
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CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| T cell | 6.92e-07 | 11 |
| pro-T cell | 6.92e-07 | 11 |
| Ontology term | p-value | n |
|---|---|---|
| digestive system | 8.52e-12 | 116 |
| digestive tract | 8.52e-12 | 116 |
| primitive gut | 8.52e-12 | 116 |
| endoderm-derived structure | 2.76e-11 | 118 |
| endoderm | 2.76e-11 | 118 |
| presumptive endoderm | 2.76e-11 | 118 |
| respiratory system | 3.70e-11 | 42 |
| respiratory tract | 8.84e-11 | 41 |
| subdivision of digestive tract | 1.31e-10 | 114 |
| thoracic cavity element | 4.21e-10 | 17 |
| thoracic segment organ | 4.21e-10 | 17 |
| thoracic cavity | 4.21e-10 | 17 |
| thoracic segment of trunk | 4.21e-10 | 17 |
| respiratory primordium | 4.21e-10 | 17 |
| endoderm of foregut | 4.21e-10 | 17 |
| lung | 2.62e-07 | 14 |
| respiratory tube | 2.62e-07 | 14 |
| respiration organ | 2.62e-07 | 14 |
| pair of lungs | 2.62e-07 | 14 |
| lung primordium | 2.62e-07 | 14 |
| lung bud | 2.62e-07 | 14 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
