FFCP PHASE1:Hg19::chr1:36948482..36948504,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1441|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2439|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000526980_5end|coexpression_cluster_id=C2|description=CAGE_peak_3_at_CSF3R_5end|id=chr1:36948482..36948504,-|ontology_enrichment_celltype=CL:0000766!1.79e-46!76;CL:0002194!1.83e-42!63;CL:0000576!1.83e-42!63;CL:0000040!1.83e-42!63;CL:0000559!1.83e-42!63;CL:0000763!1.95e-41!112;CL:0000049!1.95e-41!112;CL:0002009!2.15e-40!65;CL:0002057!2.49e-38!42;CL:0000557!1.13e-37!71;CL:0000839!7.73e-37!70;CL:0000037!1.03e-34!172;CL:0000566!1.03e-34!172;CL:0000860!1.82e-34!45;CL:0002032!1.96e-31!165;CL:0000837!1.96e-31!165;CL:0000738!4.13e-31!140;CL:0000988!1.12e-30!182;CL:0002087!2.37e-28!119;CL:0002031!1.67e-23!124;CL:0000094!3.31e-09!8;CL:0002393!3.51e-08!9;CL:0002397!3.51e-08!9|ontology_enrichment_celltype_v019=CL:0000860;1.60e-40;33!CL:0002057;1.60e-40;33!CL:0000473;3.53e-39;39!CL:0000234;3.53e-39;39!CL:0000576;4.90e-38;48!CL:0000766;1.97e-29;69!CL:0000763;3.69e-20;100!CL:0000094;1.60e-12;8!CL:0002087;2.37e-12;104!CL:0000738;2.88e-10;136!CL:0002393;1.10e-08;6!CL:0002397;1.10e-08;6!CL:0000081;1.61e-08;11!CL:0000988;2.67e-08;177!CL:0000235;9.04e-08;6|ontology_enrichment_celltype_v019_2=CL:0000766,2.54e-70,72;CL:0002194,1.89e-65,59;CL:0000576,1.89e-65,59;CL:0000040,1.89e-65,59;CL:0000559,1.89e-65,59;CL:0002009,1.16e-62,61;CL:0000473,5.77e-61,48;CL:0000234,5.77e-61,48;CL:0000763,4.07e-59,108;CL:0000049,4.07e-59,108;CL:0000557,1.16e-57,67;CL:0000839,1.96e-56,66;CL:0000860,2.06e-54,42;CL:0002057,2.06e-54,42;CL:0000037,1.52e-47,168;CL:0000738,4.71e-45,136;CL:0000988,1.19e-43,177;CL:0002032,1.01e-42,161;CL:0000837,1.01e-42,161;CL:0002087,1.95e-40,115;CL:0002031,1.65e-33,120;CL:0000094,1.60e-12,8;CL:0002393,4.70e-11,9;CL:0002397,4.70e-11,9;CL:0000134,1.94e-10,354;CL:0002320,8.89e-10,361;CL:0000081,1.60e-08,11;CL:0000235,9.07e-08,6;CL:0000219,1.61e-07,386|ontology_enrichment_development_v019=CL:0002057;7.98e-39;42!CL:0000049;1.85e-18;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!6.22e-41!102;UBERON:0003061!6.22e-41!102;UBERON:0002193!8.53e-37!112;UBERON:0007023!3.99e-33!115;UBERON:0002371!4.47e-32!80;UBERON:0001474!4.01e-28!86;UBERON:0002405!6.36e-26!115;UBERON:0004765!3.46e-21!101;UBERON:0001434!3.46e-21!101;UBERON:0003081!3.48e-11!216;UBERON:0000178!1.98e-09!15;UBERON:0000179!1.98e-09!15;UBERON:0000463!1.98e-09!15;UBERON:0001049!3.31e-08!57;UBERON:0005068!3.31e-08!57;UBERON:0006241!3.31e-08!57;UBERON:0007135!3.31e-08!57;UBERON:0003080!1.23e-07!42;UBERON:0002780!3.57e-07!41;UBERON:0001890!3.57e-07!41;UBERON:0006240!3.57e-07!41;UBERON:0002020!5.57e-07!34;UBERON:0003528!5.57e-07!34;UBERON:0001893!5.84e-07!34|ontology_enrichment_uberon_v019=UBERON:0000178;1.41e-13;15!UBERON:0000179;1.41e-13;15!UBERON:0000463;1.41e-13;15!UBERON:0002390;4.02e-09;32|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.57e-63,98;UBERON:0003061,2.57e-63,98;UBERON:0002193,4.90e-57,108;UBERON:0002371,1.76e-50,76;UBERON:0001474,2.57e-45,82;UBERON:0002405,4.67e-44,93;UBERON:0004765,1.63e-39,90;UBERON:0001434,1.35e-33,100;UBERON:0003081,1.02e-23,203;UBERON:0000178,1.43e-13,15;UBERON:0000179,1.43e-13,15;UBERON:0000463,1.43e-13,15;UBERON:0002204,7.46e-13,167;UBERON:0002384,2.93e-09,371;UBERON:0000926,2.43e-08,315;UBERON:0004120,2.43e-08,315;UBERON:0006603,2.43e-08,315;UBERON:0007023,9.68e-08,114|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.2084923340853,18.8076405067634,25.8542925937847,0,0,0,0,0,8.51441274071057,52.6295638105284,47.1279451554833,33.8536958316729,14.778421299835,11.6601719766833,15.7121096256854,38.2397367990255,28.3406957766607,38.8134497900506,43.6966589382687,27.5482484974623,34.3774071693565,45.7430903792219,33.3008918487831,37.1277100925079,61.7094768518547,40.665535065781,37.9194162464157,38.9661642853192,30.2925826564209,28.9893294934159,50.5038422411989,42.3626315740444,35.1635419189473,38.9224534220325,34.108285453299,40.4913513006059,53.3984999076595,49.9298997728203,49.825779919646,49.2447383903217,42.2401163920363,49.9534342821768,51.4589577238363,51.9271466742466,49.368132440778,7.39393502091796,9.14198489849687,10.063614984402,40.1013213192988,38.5954614602671,39.2170431540875,2.56511469367124,1.9891667719909,1.64397738388171,0,2.18455444504853,0,1.70692089026603,0.400395987036012,2.29900975981793,3.96626923670917,0.954053754535364,0.569212969109448,1.76171156811282,0,9.25199300053181,9.52864557068611,7.11137028892708,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289803085735052,0,0.267540828089713,0,0,0,0,0,0.637130828648193,0,0,2.10805166708882,0.895906278080929,3.74792179657038,5.20909954496837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,1.24430121722827,0,0,0.97364218096405,1.56716763569341,1.32957960518865,2.8618874916641,1.14398982156026,1.11437250398869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,560.06677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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1441 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2439 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000526980_5end | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_3_at_CSF3R_5end | |||
|id=chr1:36948482..36948504,- | |||
|ontology_enrichment_celltype=CL:0000766!1.79e-46!76;CL:0002194!1.83e-42!63;CL:0000576!1.83e-42!63;CL:0000040!1.83e-42!63;CL:0000559!1.83e-42!63;CL:0000763!1.95e-41!112;CL:0000049!1.95e-41!112;CL:0002009!2.15e-40!65;CL:0002057!2.49e-38!42;CL:0000557!1.13e-37!71;CL:0000839!7.73e-37!70;CL:0000037!1.03e-34!172;CL:0000566!1.03e-34!172;CL:0000860!1.82e-34!45;CL:0002032!1.96e-31!165;CL:0000837!1.96e-31!165;CL:0000738!4.13e-31!140;CL:0000988!1.12e-30!182;CL:0002087!2.37e-28!119;CL:0002031!1.67e-23!124;CL:0000094!3.31e-09!8;CL:0002393!3.51e-08!9;CL:0002397!3.51e-08!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.60e-40;33!CL:0002057;1.60e-40;33!CL:0000473;3.53e-39;39!CL:0000234;3.53e-39;39!CL:0000576;4.90e-38;48!CL:0000766;1.97e-29;69!CL:0000763;3.69e-20;100!CL:0000094;1.60e-12;8!CL:0002087;2.37e-12;104!CL:0000738;2.88e-10;136!CL:0002393;1.10e-08;6!CL:0002397;1.10e-08;6!CL:0000081;1.61e-08;11!CL:0000988;2.67e-08;177!CL:0000235;9.04e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.54e-70,72;CL:0002194,1.89e-65,59;CL:0000576,1.89e-65,59;CL:0000040,1.89e-65,59;CL:0000559,1.89e-65,59;CL:0002009,1.16e-62,61;CL:0000473,5.77e-61,48;CL:0000234,5.77e-61,48;CL:0000763,4.07e-59,108;CL:0000049,4.07e-59,108;CL:0000557,1.16e-57,67;CL:0000839,1.96e-56,66;CL:0000860,2.06e-54,42;CL:0002057,2.06e-54,42;CL:0000037,1.52e-47,168;CL:0000738,4.71e-45,136;CL:0000988,1.19e-43,177;CL:0002032,1.01e-42,161;CL:0000837,1.01e-42,161;CL:0002087,1.95e-40,115;CL:0002031,1.65e-33,120;CL:0000094,1.60e-12,8;CL:0002393,4.70e-11,9;CL:0002397,4.70e-11,9;CL:0000134,1.94e-10,354;CL:0002320,8.89e-10,361;CL:0000081,1.60e-08,11;CL:0000235,9.07e-08,6;CL:0000219,1.61e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;7.98e-39;42!CL:0000049;1.85e-18;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!6.22e-41!102;UBERON:0003061!6.22e-41!102;UBERON:0002193!8.53e-37!112;UBERON:0007023!3.99e-33!115;UBERON:0002371!4.47e-32!80;UBERON:0001474!4.01e-28!86;UBERON:0002405!6.36e-26!115;UBERON:0004765!3.46e-21!101;UBERON:0001434!3.46e-21!101;UBERON:0003081!3.48e-11!216;UBERON:0000178!1.98e-09!15;UBERON:0000179!1.98e-09!15;UBERON:0000463!1.98e-09!15;UBERON:0001049!3.31e-08!57;UBERON:0005068!3.31e-08!57;UBERON:0006241!3.31e-08!57;UBERON:0007135!3.31e-08!57;UBERON:0003080!1.23e-07!42;UBERON:0002780!3.57e-07!41;UBERON:0001890!3.57e-07!41;UBERON:0006240!3.57e-07!41;UBERON:0002020!5.57e-07!34;UBERON:0003528!5.57e-07!34;UBERON:0001893!5.84e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.41e-13;15!UBERON:0000179;1.41e-13;15!UBERON:0000463;1.41e-13;15!UBERON:0002390;4.02e-09;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.57e-63,98;UBERON:0003061,2.57e-63,98;UBERON:0002193,4.90e-57,108;UBERON:0002371,1.76e-50,76;UBERON:0001474,2.57e-45,82;UBERON:0002405,4.67e-44,93;UBERON:0004765,1.63e-39,90;UBERON:0001434,1.35e-33,100;UBERON:0003081,1.02e-23,203;UBERON:0000178,1.43e-13,15;UBERON:0000179,1.43e-13,15;UBERON:0000463,1.43e-13,15;UBERON:0002204,7.46e-13,167;UBERON:0002384,2.93e-09,371;UBERON:0000926,2.43e-08,315;UBERON:0004120,2.43e-08,315;UBERON:0006603,2.43e-08,315;UBERON:0007023,9.68e-08,114 | |||
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| |||
|short_description=p3@CSF3R | |||
}} |
Revision as of 05:32, 12 September 2013
Short description: | p3@CSF3R |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_CSF3R_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_ENST00000526980_5end |
EntrezGene: | CSF3R |
HGNC: | 2439 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.54e-70 | 72 |
monopoietic cell | 1.89e-65 | 59 |
monocyte | 1.89e-65 | 59 |
monoblast | 1.89e-65 | 59 |
promonocyte | 1.89e-65 | 59 |
macrophage dendritic cell progenitor | 1.16e-62 | 61 |
defensive cell | 5.77e-61 | 48 |
phagocyte | 5.77e-61 | 48 |
myeloid cell | 4.07e-59 | 108 |
common myeloid progenitor | 4.07e-59 | 108 |
granulocyte monocyte progenitor cell | 1.16e-57 | 67 |
myeloid lineage restricted progenitor cell | 1.96e-56 | 66 |
classical monocyte | 2.06e-54 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.06e-54 | 42 |
hematopoietic stem cell | 1.52e-47 | 168 |
leukocyte | 4.71e-45 | 136 |
hematopoietic cell | 1.19e-43 | 177 |
hematopoietic oligopotent progenitor cell | 1.01e-42 | 161 |
hematopoietic multipotent progenitor cell | 1.01e-42 | 161 |
nongranular leukocyte | 1.95e-40 | 115 |
hematopoietic lineage restricted progenitor cell | 1.65e-33 | 120 |
granulocyte | 1.60e-12 | 8 |
intermediate monocyte | 4.70e-11 | 9 |
CD14-positive, CD16-positive monocyte | 4.70e-11 | 9 |
mesenchymal cell | 1.94e-10 | 354 |
connective tissue cell | 8.89e-10 | 361 |
blood cell | 1.60e-08 | 11 |
macrophage | 9.07e-08 | 6 |
motile cell | 1.61e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.57e-63 | 98 |
blood island | 2.57e-63 | 98 |
hemolymphoid system | 4.90e-57 | 108 |
bone marrow | 1.76e-50 | 76 |
bone element | 2.57e-45 | 82 |
immune system | 4.67e-44 | 93 |
skeletal element | 1.63e-39 | 90 |
skeletal system | 1.35e-33 | 100 |
lateral plate mesoderm | 1.02e-23 | 203 |
blood | 1.43e-13 | 15 |
haemolymphatic fluid | 1.43e-13 | 15 |
organism substance | 1.43e-13 | 15 |
musculoskeletal system | 7.46e-13 | 167 |
connective tissue | 2.93e-09 | 371 |
mesoderm | 2.43e-08 | 315 |
mesoderm-derived structure | 2.43e-08 | 315 |
presumptive mesoderm | 2.43e-08 | 315 |
adult organism | 9.68e-08 | 114 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.