FFCP PHASE1:Hg19::chr1:114414268..114414271,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=26191|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9652|TSSclassifier=S|UniProt=|association_with_transcript=14bp_to_ENST00000484147_5end|coexpression_cluster_id=C1462|description=CAGE_peak_4_at_PTPN22_5end|id=chr1:114414268..114414271,-|ontology_enrichment_celltype=CL:0000738!2.12e-29!140;CL:0000037!8.76e-27!172;CL:0000566!8.76e-27!172;CL:0000988!1.36e-24!182;CL:0002032!8.59e-23!165;CL:0000837!8.59e-23!165;CL:0002031!1.59e-21!124;CL:0002087!2.39e-21!119;CL:0000791!1.57e-19!18;CL:0000789!1.57e-19!18;CL:0002420!1.57e-19!18;CL:0002419!1.57e-19!18;CL:0000790!1.57e-19!18;CL:0000838!6.19e-19!52;CL:0000542!1.83e-18!53;CL:0000051!1.83e-18!53;CL:0000084!2.17e-15!25;CL:0000827!2.17e-15!25;CL:0000624!1.38e-11!6;CL:0000623!1.11e-09!3;CL:0000825!1.11e-09!3;CL:0000842!6.09e-09!3;CL:0000898!6.42e-09!3;CL:0000625!1.08e-08!11;CL:0000766!2.51e-08!76;CL:0000763!8.10e-08!112;CL:0000049!8.10e-08!112;CL:0000134!1.70e-07!358;CL:0002320!3.98e-07!365;CL:0000224!8.74e-07!4|ontology_enrichment_celltype_v019=CL:0000623;4.83e-30;3!CL:0001014;1.56e-12;2!CL:0001016;1.56e-12;2!CL:0000815;2.74e-12;2!CL:0000792;2.74e-12;2!CL:0000771;2.74e-12;2!CL:0002677;2.74e-12;2!CL:0000094;5.08e-12;8!CL:0000791;1.26e-11;18!CL:0000789;1.26e-11;18!CL:0002419;1.26e-11;18!CL:0000081;5.31e-09;11!CL:0000625;6.10e-09;11!CL:0000767;9.66e-09;3!CL:0000898;1.26e-08;3!CL:0000084;1.51e-08;25|ontology_enrichment_celltype_v019_2=CL:0000623,3.59e-30,3;CL:0000825,3.59e-30,3;CL:0000738,8.37e-13,136;CL:0001014,1.65e-12,2;CL:0001016,1.65e-12,2;CL:0000771,2.90e-12,2;CL:0000815,3.24e-12,2;CL:0000792,3.24e-12,2;CL:0002677,3.24e-12,2;CL:0000094,5.22e-12,8;CL:0000791,1.33e-11,18;CL:0000789,1.33e-11,18;CL:0002420,1.33e-11,18;CL:0002419,1.33e-11,18;CL:0000790,1.33e-11,18;CL:0002032,8.68e-11,161;CL:0000837,8.68e-11,161;CL:0000838,1.02e-10,52;CL:0000542,1.61e-10,53;CL:0000051,1.61e-10,53;CL:0000037,2.50e-10,168;CL:0000988,8.62e-10,177;CL:0000081,5.41e-09,11;CL:0000625,6.10e-09,11;CL:0002031,8.60e-09,120;CL:0000767,9.66e-09,3;CL:0000898,1.40e-08,3;CL:0000084,1.57e-08,25;CL:0000827,1.57e-08,25|ontology_enrichment_development_v019=CL:0000790;1.26e-11;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!2.03e-16!7;UBERON:0002390!2.93e-13!102;UBERON:0003061!2.93e-13!102;UBERON:0002193!1.95e-11!112;UBERON:0002370!1.44e-10!4;UBERON:0005058!1.44e-10!4;UBERON:0009113!1.44e-10!4;UBERON:0003295!1.44e-10!4;UBERON:0005562!1.44e-10!4;UBERON:0002106!1.51e-07!3;UBERON:0004854!1.51e-07!3;UBERON:0009034!1.51e-07!3;UBERON:0002095!1.51e-07!3;UBERON:0004782!1.51e-07!3;UBERON:0003281!1.51e-07!3;UBERON:0009664!1.51e-07!3;UBERON:0002296!1.51e-07!3;UBERON:0005602!1.51e-07!3;UBERON:0001179!1.51e-07!3;UBERON:0006293!1.51e-07!3;UBERON:0003351!4.83e-07!6|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0,0.0787107813136792,0,2.30297638858328,0.154816123316076,0,0,0,0.154934401160603,0,0,0,0.200544447470142,0.434021741431704,0,0,0,0.145398238779565,0.377875943688809,0.242584061187816,0,0,0,0,0,0,0.344745680736619,0,0,0.188242339542605,0,0,0.306083892370903,0,0,0.659702600373432,0.199463657621632,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0.32145117339416,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0.560508562981536,0,0.590129310341499,0.786021525498329,0,0,0.32592226663359,0.946895611469467,0,0.891283655081389,1.17842362989935,0.221533894583621,0.812411591295047,0,0.390178042679635,0.164437904603676,0.276350017785848,0.579606171470105,0.444859689486181,0,0,0,0.383220493601921,0.34362744548263,0.506039384039006,0,0,0,0.451725357233318,0.255973222308837,0,0.710331756132051,0,1.81446068902259,1.06976078313403,0.579297615531196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.882926198829301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.89728533054321,0,0.414656231081544,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,1.77327684181734,0.862510299438069,1.54011643535698,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0.647142602455851,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0.79312517629427,0,0,0,0,0,0.0711418433484141,0,0,0.191505370132367,0.423347165447766,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1992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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=26191 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9652 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=14bp_to_ENST00000484147_5end | |||
|coexpression_cluster_id=C1462 | |||
|description=CAGE_peak_4_at_PTPN22_5end | |||
|id=chr1:114414268..114414271,- | |||
|ontology_enrichment_celltype=CL:0000738!2.12e-29!140;CL:0000037!8.76e-27!172;CL:0000566!8.76e-27!172;CL:0000988!1.36e-24!182;CL:0002032!8.59e-23!165;CL:0000837!8.59e-23!165;CL:0002031!1.59e-21!124;CL:0002087!2.39e-21!119;CL:0000791!1.57e-19!18;CL:0000789!1.57e-19!18;CL:0002420!1.57e-19!18;CL:0002419!1.57e-19!18;CL:0000790!1.57e-19!18;CL:0000838!6.19e-19!52;CL:0000542!1.83e-18!53;CL:0000051!1.83e-18!53;CL:0000084!2.17e-15!25;CL:0000827!2.17e-15!25;CL:0000624!1.38e-11!6;CL:0000623!1.11e-09!3;CL:0000825!1.11e-09!3;CL:0000842!6.09e-09!3;CL:0000898!6.42e-09!3;CL:0000625!1.08e-08!11;CL:0000766!2.51e-08!76;CL:0000763!8.10e-08!112;CL:0000049!8.10e-08!112;CL:0000134!1.70e-07!358;CL:0002320!3.98e-07!365;CL:0000224!8.74e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0000623;4.83e-30;3!CL:0001014;1.56e-12;2!CL:0001016;1.56e-12;2!CL:0000815;2.74e-12;2!CL:0000792;2.74e-12;2!CL:0000771;2.74e-12;2!CL:0002677;2.74e-12;2!CL:0000094;5.08e-12;8!CL:0000791;1.26e-11;18!CL:0000789;1.26e-11;18!CL:0002419;1.26e-11;18!CL:0000081;5.31e-09;11!CL:0000625;6.10e-09;11!CL:0000767;9.66e-09;3!CL:0000898;1.26e-08;3!CL:0000084;1.51e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000623,3.59e-30,3;CL:0000825,3.59e-30,3;CL:0000738,8.37e-13,136;CL:0001014,1.65e-12,2;CL:0001016,1.65e-12,2;CL:0000771,2.90e-12,2;CL:0000815,3.24e-12,2;CL:0000792,3.24e-12,2;CL:0002677,3.24e-12,2;CL:0000094,5.22e-12,8;CL:0000791,1.33e-11,18;CL:0000789,1.33e-11,18;CL:0002420,1.33e-11,18;CL:0002419,1.33e-11,18;CL:0000790,1.33e-11,18;CL:0002032,8.68e-11,161;CL:0000837,8.68e-11,161;CL:0000838,1.02e-10,52;CL:0000542,1.61e-10,53;CL:0000051,1.61e-10,53;CL:0000037,2.50e-10,168;CL:0000988,8.62e-10,177;CL:0000081,5.41e-09,11;CL:0000625,6.10e-09,11;CL:0002031,8.60e-09,120;CL:0000767,9.66e-09,3;CL:0000898,1.40e-08,3;CL:0000084,1.57e-08,25;CL:0000827,1.57e-08,25 | |||
|ontology_enrichment_development_v019=CL:0000790;1.26e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!2.03e-16!7;UBERON:0002390!2.93e-13!102;UBERON:0003061!2.93e-13!102;UBERON:0002193!1.95e-11!112;UBERON:0002370!1.44e-10!4;UBERON:0005058!1.44e-10!4;UBERON:0009113!1.44e-10!4;UBERON:0003295!1.44e-10!4;UBERON:0005562!1.44e-10!4;UBERON:0002106!1.51e-07!3;UBERON:0004854!1.51e-07!3;UBERON:0009034!1.51e-07!3;UBERON:0002095!1.51e-07!3;UBERON:0004782!1.51e-07!3;UBERON:0003281!1.51e-07!3;UBERON:0009664!1.51e-07!3;UBERON:0002296!1.51e-07!3;UBERON:0005602!1.51e-07!3;UBERON:0001179!1.51e-07!3;UBERON:0006293!1.51e-07!3;UBERON:0003351!4.83e-07!6 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0,0.0787107813136792,0,2.30297638858328,0.154816123316076,0,0,0,0.154934401160603,0,0,0,0.200544447470142,0.434021741431704,0,0,0,0.145398238779565,0.377875943688809,0.242584061187816,0,0,0,0,0,0,0.344745680736619,0,0,0.188242339542605,0,0,0.306083892370903,0,0,0.659702600373432,0.199463657621632,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0.32145117339416,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0.560508562981536,0,0.590129310341499,0.786021525498329,0,0,0.32592226663359,0.946895611469467,0,0.891283655081389,1.17842362989935,0.221533894583621,0.812411591295047,0,0.390178042679635,0.164437904603676,0.276350017785848,0.579606171470105,0.444859689486181,0,0,0,0.383220493601921,0.34362744548263,0.506039384039006,0,0,0,0.451725357233318,0.255973222308837,0,0.710331756132051,0,1.81446068902259,1.06976078313403,0.579297615531196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.882926198829301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.89728533054321,0,0.414656231081544,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,1.77327684181734,0.862510299438069,1.54011643535698,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0.647142602455851,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0.79312517629427,0,0,0,0,0,0.0711418433484141,0,0,0.191505370132367,0.423347165447766,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254019996197353,0,0,0,0,0,6.74921674654501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230467975111559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308696632431779,0,0,0,0,0,0,0,0,0.187967835959707,0.128915775947154,0.0999411559249289,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.322944549180031,0.434523000071005,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p4@PTPN22 | |||
}} |
Revision as of 23:37, 11 September 2013
Short description: | p4@PTPN22 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_PTPN22_5end |
Coexpression cluster: | C1462_Mast_immature_CD4_Macrophage_Dendritic_CD8_CD19 |
Association with transcript: | 14bp_to_ENST00000484147_5end |
EntrezGene: | PTPN22 |
HGNC: | 9652 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
natural killer cell | 3.59e-30 | 3 |
pro-NK cell | 3.59e-30 | 3 |
leukocyte | 8.37e-13 | 136 |
CD1a-positive Langerhans cell | 1.65e-12 | 2 |
immature CD1a-positive Langerhans cell | 1.65e-12 | 2 |
eosinophil | 2.90e-12 | 2 |
regulatory T cell | 3.24e-12 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 3.24e-12 | 2 |
naive regulatory T cell | 3.24e-12 | 2 |
granulocyte | 5.22e-12 | 8 |
mature alpha-beta T cell | 1.33e-11 | 18 |
alpha-beta T cell | 1.33e-11 | 18 |
immature T cell | 1.33e-11 | 18 |
mature T cell | 1.33e-11 | 18 |
immature alpha-beta T cell | 1.33e-11 | 18 |
hematopoietic oligopotent progenitor cell | 8.68e-11 | 161 |
hematopoietic multipotent progenitor cell | 8.68e-11 | 161 |
lymphoid lineage restricted progenitor cell | 1.02e-10 | 52 |
lymphocyte | 1.61e-10 | 53 |
common lymphoid progenitor | 1.61e-10 | 53 |
hematopoietic stem cell | 2.50e-10 | 168 |
hematopoietic cell | 8.62e-10 | 177 |
blood cell | 5.41e-09 | 11 |
CD8-positive, alpha-beta T cell | 6.10e-09 | 11 |
hematopoietic lineage restricted progenitor cell | 8.60e-09 | 120 |
basophil | 9.66e-09 | 3 |
naive T cell | 1.40e-08 | 3 |
T cell | 1.57e-08 | 25 |
pro-T cell | 1.57e-08 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.