FFCP PHASE1:Hg19::chr10:116164538..116164562,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=84632|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=25901|TSSclassifier=S|UniProt=F6QUH3,Q8N4X5|association_with_transcript=-23bp_to_ENST00000369271,ENST00000541919,NM_001001936,NM_032550,uc001lbn.2,uc001lbo.2,uc001lbp.2,uc001lbr.1,uc010qse.1_5end|coexpression_cluster_id=C2982|description=CAGE_peak_3_at_AFAP1L2_5end|id=chr10:116164538..116164562,-|ontology_enrichment_celltype=CL:0002076!7.63e-10!43;CL:0002368!2.11e-07!13|ontology_enrichment_celltype_v019=CL:0002076;1.86e-10;42!CL:0002368;4.43e-09;13!CL:0002159;5.49e-09;14|ontology_enrichment_celltype_v019_2=CL:0002076,1.80e-13,42;CL:0002368,3.61e-09,13;CL:0002159,5.00e-09,14;CL:0000223,7.36e-09,58;CL:0000066,7.53e-08,253|ontology_enrichment_development_v019=UBERON:0004872;3.32e-07;7|ontology_enrichment_disease=DOID:1749!1.42e-08!14|ontology_enrichment_disease_v019=DOID:1749;4.65e-12;14|ontology_enrichment_disease_v019_2=DOID:1749,4.05e-12,14|ontology_enrichment_uberon=UBERON:0007023!1.08e-26!115;UBERON:0004121!5.15e-17!169;UBERON:0000924!6.66e-16!173;UBERON:0006601!6.66e-16!173;UBERON:0000153!2.50e-15!129;UBERON:0007811!2.50e-15!129;UBERON:0000062!5.20e-15!511;UBERON:0001049!5.33e-15!57;UBERON:0005068!5.33e-15!57;UBERON:0006241!5.33e-15!57;UBERON:0007135!5.33e-15!57;UBERON:0000064!1.95e-14!219;UBERON:0000033!3.28e-14!123;UBERON:0003075!1.65e-13!86;UBERON:0007284!1.65e-13!86;UBERON:0002346!4.40e-12!90;UBERON:0001017!1.42e-11!82;UBERON:0000922!2.05e-11!612;UBERON:0002616!2.91e-11!59;UBERON:0004119!3.50e-11!169;UBERON:0000925!3.50e-11!169;UBERON:0006595!3.50e-11!169;UBERON:0005743!5.33e-11!86;UBERON:0000955!5.60e-11!69;UBERON:0006238!5.60e-11!69;UBERON:0000467!2.73e-10!625;UBERON:0000481!3.19e-10!347;UBERON:0000468!3.45e-10!659;UBERON:0000480!3.63e-10!626;UBERON:0003080!7.40e-10!42;UBERON:0002050!1.04e-09!605;UBERON:0005423!1.04e-09!605;UBERON:0002780!2.07e-09!41;UBERON:0001890!2.07e-09!41;UBERON:0006240!2.07e-09!41;UBERON:0000923!2.58e-09!604;UBERON:0005291!2.58e-09!604;UBERON:0006598!2.58e-09!604;UBERON:0002532!2.58e-09!604;UBERON:0000475!4.02e-09!365;UBERON:0000073!4.06e-09!94;UBERON:0001016!4.06e-09!94;UBERON:0005631!9.19e-09!14;UBERON:0000158!9.19e-09!14;UBERON:0000119!2.17e-08!312;UBERON:0000483!2.85e-08!309;UBERON:0002020!3.75e-08!34;UBERON:0003528!3.75e-08!34;UBERON:0001893!4.06e-08!34;UBERON:0004111!6.89e-08!241;UBERON:0001007!8.10e-08!155;UBERON:0001555!8.10e-08!155;UBERON:0007026!8.10e-08!155;UBERON:0003056!9.84e-08!61;UBERON:0002791!1.07e-07!33;UBERON:0001869!2.09e-07!32;UBERON:0000477!2.76e-07!286|ontology_enrichment_uberon_v019=UBERON:0000478;2.21e-08;24!UBERON:0001987;3.51e-07;4!UBERON:0000974;5.23e-07;6|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.06e-12,114;UBERON:0005631,1.78e-10,14;UBERON:0000158,1.78e-10,14;UBERON:0004119,2.49e-10,160;UBERON:0000925,2.49e-10,160;UBERON:0006595,2.49e-10,160;UBERON:0010371,5.53e-10,104;UBERON:0003124,1.55e-09,7;UBERON:0004175,5.86e-09,25;UBERON:0000922,6.04e-09,592;UBERON:0005423,9.98e-09,581;UBERON:0002050,1.64e-08,564;UBERON:0000478,3.65e-08,24;UBERON:0004923,4.09e-08,66;UBERON:0003100,1.58e-07,41;UBERON:0004121,2.04e-07,171;UBERON:0000924,2.04e-07,171;UBERON:0006601,2.04e-07,171;UBERON:0001987,4.30e-07,4;UBERON:0004340,4.30e-07,4;UBERON:0000923,7.32e-07,560;UBERON:0010316,7.32e-07,560;UBERON:0005291,7.32e-07,560;UBERON:0006598,7.32e-07,560;UBERON:0010317,7.32e-07,560;UBERON:0002532,7.32e-07,560|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,6.334799791775,2.63766978228454,0,0,0,0,0,0,0.369363174230364,0.816002764977012,0,0.286235987131057,0.547497700291537,0.125542639594803,0.0764134057479513,0.0821005894499457,0.157421562627358,0,0,0.154816123316076,2.75826367343678,3.31326510656075,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,0.255725123687061,0,0,0,0,0.973269740605272,0.850813354476611,0.886917589850256,0.43917392846563,1.76821751921912,1.09288586487763,3.33705998505986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0,0,0,0,0,1.24484414159907,0.404132016209064,0,0,0,0.234321431833797,0,0,0,0,0.323745888736263,0.140450806702248,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0.30648779579902,0.600952235626387,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.50347753918506,5.72766853240753,10.0381608386151,0.243947412259191,0.132529768321485,0.464775771478074,0.414644220061482,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0.237270619111097,0,0,0,0,0,3.2925920906512,1.47008711385542,0,0,0,0,0,0,4.82901255797952,3.37205259772859,5.5290934826397,3.61094936118265,0.651616610620649,0,0,0,0,0,0,0,0,0,0,0,0,4.68669169933885,6.2153387433578,5.2456785979683,2.4180801129769,3.19697332365358,12.651628412452,0,0,0.207328115540772,0,0.12624243342638,0.126995788584338,0,0,3.4214489204541,0.205654985406647,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=84632 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25901 | |||
|TSSclassifier=S | |||
|UniProt=F6QUH3,Q8N4X5 | |||
|association_with_transcript=-23bp_to_ENST00000369271,ENST00000541919,NM_001001936,NM_032550,uc001lbn.2,uc001lbo.2,uc001lbp.2,uc001lbr.1,uc010qse.1_5end | |||
|coexpression_cluster_id=C2982 | |||
|description=CAGE_peak_3_at_AFAP1L2_5end | |||
|id=chr10:116164538..116164562,- | |||
|ontology_enrichment_celltype=CL:0002076!7.63e-10!43;CL:0002368!2.11e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.86e-10;42!CL:0002368;4.43e-09;13!CL:0002159;5.49e-09;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.80e-13,42;CL:0002368,3.61e-09,13;CL:0002159,5.00e-09,14;CL:0000223,7.36e-09,58;CL:0000066,7.53e-08,253 | |||
|ontology_enrichment_development_v019=UBERON:0004872;3.32e-07;7 | |||
|ontology_enrichment_disease=DOID:1749!1.42e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;4.65e-12;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,4.05e-12,14 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.08e-26!115;UBERON:0004121!5.15e-17!169;UBERON:0000924!6.66e-16!173;UBERON:0006601!6.66e-16!173;UBERON:0000153!2.50e-15!129;UBERON:0007811!2.50e-15!129;UBERON:0000062!5.20e-15!511;UBERON:0001049!5.33e-15!57;UBERON:0005068!5.33e-15!57;UBERON:0006241!5.33e-15!57;UBERON:0007135!5.33e-15!57;UBERON:0000064!1.95e-14!219;UBERON:0000033!3.28e-14!123;UBERON:0003075!1.65e-13!86;UBERON:0007284!1.65e-13!86;UBERON:0002346!4.40e-12!90;UBERON:0001017!1.42e-11!82;UBERON:0000922!2.05e-11!612;UBERON:0002616!2.91e-11!59;UBERON:0004119!3.50e-11!169;UBERON:0000925!3.50e-11!169;UBERON:0006595!3.50e-11!169;UBERON:0005743!5.33e-11!86;UBERON:0000955!5.60e-11!69;UBERON:0006238!5.60e-11!69;UBERON:0000467!2.73e-10!625;UBERON:0000481!3.19e-10!347;UBERON:0000468!3.45e-10!659;UBERON:0000480!3.63e-10!626;UBERON:0003080!7.40e-10!42;UBERON:0002050!1.04e-09!605;UBERON:0005423!1.04e-09!605;UBERON:0002780!2.07e-09!41;UBERON:0001890!2.07e-09!41;UBERON:0006240!2.07e-09!41;UBERON:0000923!2.58e-09!604;UBERON:0005291!2.58e-09!604;UBERON:0006598!2.58e-09!604;UBERON:0002532!2.58e-09!604;UBERON:0000475!4.02e-09!365;UBERON:0000073!4.06e-09!94;UBERON:0001016!4.06e-09!94;UBERON:0005631!9.19e-09!14;UBERON:0000158!9.19e-09!14;UBERON:0000119!2.17e-08!312;UBERON:0000483!2.85e-08!309;UBERON:0002020!3.75e-08!34;UBERON:0003528!3.75e-08!34;UBERON:0001893!4.06e-08!34;UBERON:0004111!6.89e-08!241;UBERON:0001007!8.10e-08!155;UBERON:0001555!8.10e-08!155;UBERON:0007026!8.10e-08!155;UBERON:0003056!9.84e-08!61;UBERON:0002791!1.07e-07!33;UBERON:0001869!2.09e-07!32;UBERON:0000477!2.76e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;2.21e-08;24!UBERON:0001987;3.51e-07;4!UBERON:0000974;5.23e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.06e-12,114;UBERON:0005631,1.78e-10,14;UBERON:0000158,1.78e-10,14;UBERON:0004119,2.49e-10,160;UBERON:0000925,2.49e-10,160;UBERON:0006595,2.49e-10,160;UBERON:0010371,5.53e-10,104;UBERON:0003124,1.55e-09,7;UBERON:0004175,5.86e-09,25;UBERON:0000922,6.04e-09,592;UBERON:0005423,9.98e-09,581;UBERON:0002050,1.64e-08,564;UBERON:0000478,3.65e-08,24;UBERON:0004923,4.09e-08,66;UBERON:0003100,1.58e-07,41;UBERON:0004121,2.04e-07,171;UBERON:0000924,2.04e-07,171;UBERON:0006601,2.04e-07,171;UBERON:0001987,4.30e-07,4;UBERON:0004340,4.30e-07,4;UBERON:0000923,7.32e-07,560;UBERON:0010316,7.32e-07,560;UBERON:0005291,7.32e-07,560;UBERON:0006598,7.32e-07,560;UBERON:0010317,7.32e-07,560;UBERON:0002532,7.32e-07,560 | |||
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| |||
|short_description=p3@AFAP1L2 | |||
}} |
Revision as of 11:51, 10 September 2013
Short description: | p3@AFAP1L2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_AFAP1L2_5end |
Coexpression cluster: | C2982_thyroid_oral_throat_spleen_ductus_uterus_cerebellum |
Association with transcript: | -23bp_to_ENST00000369271, ENST00000541919, NM_001001936, NM_032550, uc001lbn.2, uc001lbo.2, uc001lbp.2, uc001lbr.1, uc010qse.1_5end |
EntrezGene: | AFAP1L2 |
HGNC: | 25901 |
UniProt: | F6QUH3Q8N4X5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.80e-13 | 42 |
respiratory epithelial cell | 3.61e-09 | 13 |
general ecto-epithelial cell | 5.00e-09 | 14 |
endodermal cell | 7.36e-09 | 58 |
epithelial cell | 7.53e-08 | 253 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.06e-12 | 114 |
extraembryonic membrane | 1.78e-10 | 14 |
membranous layer | 1.78e-10 | 14 |
endoderm-derived structure | 2.49e-10 | 160 |
endoderm | 2.49e-10 | 160 |
presumptive endoderm | 2.49e-10 | 160 |
ecto-epithelium | 5.53e-10 | 104 |
chorion | 1.55e-09 | 7 |
internal genitalia | 5.86e-09 | 25 |
embryo | 6.04e-09 | 592 |
developing anatomical structure | 9.98e-09 | 581 |
embryonic structure | 1.64e-08 | 564 |
extraembryonic structure | 3.65e-08 | 24 |
organ component layer | 4.09e-08 | 66 |
female organism | 1.58e-07 | 41 |
ectoderm-derived structure | 2.04e-07 | 171 |
ectoderm | 2.04e-07 | 171 |
presumptive ectoderm | 2.04e-07 | 171 |
placenta | 4.30e-07 | 4 |
allantois | 4.30e-07 | 4 |
germ layer | 7.32e-07 | 560 |
germ layer / neural crest | 7.32e-07 | 560 |
embryonic tissue | 7.32e-07 | 560 |
presumptive structure | 7.32e-07 | 560 |
germ layer / neural crest derived structure | 7.32e-07 | 560 |
epiblast (generic) | 7.32e-07 | 560 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 4.05e-12 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.