FFCP PHASE1:Hg19::chr11:31833736..31833778,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5080|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=8620|TSSclassifier=S|UniProt=E9PKM0|association_with_transcript=-11bp_to_ENST00000524853_5end|description=CAGE_peak_13_at_PAX6_5end|id=chr11:31833736..31833778,-|ontology_enrichment_celltype=CL:0002319!5.90e-07!25;CL:0000064!1.00e-06!3;CL:0005012!1.00e-06!3;CL:0000067!1.00e-06!3;CL:0002304!1.00e-06!3|ontology_enrichment_celltype_v019=CL:0000047;4.07e-16;2!CL:0000064;4.65e-11;3!CL:0000067;4.65e-11;3!CL:0005012;4.65e-11;3!CL:0002304;4.65e-11;3!CL:0000306;1.63e-08;4!CL:0002222;1.63e-08;4!CL:0002224;1.63e-08;4|ontology_enrichment_celltype_v019_2=CL:0000064,6.99e-11,3;CL:0000067,6.99e-11,3;CL:0005012,6.99e-11,3;CL:0002304,6.99e-11,3;CL:0000047,2.46e-09,8;CL:0000306,1.77e-08,4;CL:0002222,1.77e-08,4;CL:0002224,1.77e-08,4|ontology_enrichment_development_v019=UBERON:0005425;6.46e-09;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:6193;2.13e-09;1|ontology_enrichment_disease_v019_2=DOID:6193,2.22e-09,1|ontology_enrichment_uberon=UBERON:0003075!3.57e-34!86;UBERON:0007284!3.57e-34!86;UBERON:0002346!1.42e-33!90;UBERON:0000073!7.20e-32!94;UBERON:0001016!7.20e-32!94;UBERON:0005743!8.00e-30!86;UBERON:0003056!2.53e-26!61;UBERON:0001049!5.08e-26!57;UBERON:0005068!5.08e-26!57;UBERON:0006241!5.08e-26!57;UBERON:0007135!5.08e-26!57;UBERON:0001017!1.38e-25!82;UBERON:0000924!7.07e-22!173;UBERON:0006601!7.07e-22!173;UBERON:0004121!8.06e-22!169;UBERON:0002616!2.01e-21!59;UBERON:0000955!3.21e-19!69;UBERON:0006238!3.21e-19!69;UBERON:0000033!3.53e-18!123;UBERON:0000153!1.30e-17!129;UBERON:0007811!1.30e-17!129;UBERON:0002780!1.20e-16!41;UBERON:0001890!1.20e-16!41;UBERON:0006240!1.20e-16!41;UBERON:0003080!4.24e-16!42;UBERON:0007625!9.28e-16!11;UBERON:0001893!1.26e-15!34;UBERON:0002791!1.00e-14!33;UBERON:0002104!2.79e-14!21;UBERON:0002020!3.88e-14!34;UBERON:0003528!3.88e-14!34;UBERON:0001869!1.11e-13!32;UBERON:0000970!8.16e-13!20;UBERON:0001032!5.23e-12!24;UBERON:0004456!5.23e-12!24;UBERON:0003076!1.06e-11!15;UBERON:0003057!1.06e-11!15;UBERON:0000019!1.54e-11!19;UBERON:0000047!1.54e-11!19;UBERON:0004088!1.54e-11!19;UBERON:0003072!1.54e-11!19;UBERON:0003071!1.54e-11!19;UBERON:0004128!1.54e-11!19;UBERON:0000020!1.09e-10!23;UBERON:0001456!3.82e-10!21;UBERON:0000956!7.78e-10!25;UBERON:0000203!7.78e-10!25;UBERON:0004732!1.66e-09!13;UBERON:0000488!3.92e-08!4;UBERON:0007023!4.00e-08!115;UBERON:0004733!4.77e-08!12;UBERON:0002028!4.77e-08!12;UBERON:0007277!4.77e-08!12;UBERON:0001801!1.17e-07!14;UBERON:0002619!9.65e-07!22;UBERON:0000483!9.91e-07!309;UBERON:0001778!1.00e-06!3;UBERON:0001775!1.00e-06!3|ontology_enrichment_uberon_v019=UBERON:0007625;3.17e-11;11!UBERON:0001778;4.65e-11;3!UBERON:0001775;4.65e-11;3!UBERON:0000941;6.46e-09;1!UBERON:0001785;6.46e-09;1!UBERON:0002464;6.46e-09;1!UBERON:0004904;6.46e-09;1!UBERON:0001021;6.46e-09;1!UBERON:0002104;7.17e-09;21!UBERON:0001801;7.44e-09;14!UBERON:0010077;1.63e-08;4!UBERON:0005389;1.63e-08;4!UBERON:0000488;1.63e-08;4!UBERON:0000484;1.63e-08;4!UBERON:0000965;1.63e-08;4!UBERON:0001803;1.63e-08;4!UBERON:0001032;9.72e-08;24!UBERON:0004456;9.72e-08;24|ontology_enrichment_uberon_v019_2=UBERON:0007625,4.15e-11,11;UBERON:0001778,6.99e-11,3;UBERON:0001775,6.99e-11,3;UBERON:0000019,2.90e-09,20;UBERON:0000047,2.90e-09,20;UBERON:0010312,2.90e-09,20;UBERON:0004088,2.90e-09,20;UBERON:0010230,2.90e-09,20;UBERON:0003072,2.90e-09,20;UBERON:0004128,2.90e-09,20;UBERON:0003071,2.90e-09,20;UBERON:0000941,5.31e-09,1;UBERON:0001785,5.31e-09,1;UBERON:0002464,5.31e-09,1;UBERON:0004904,5.31e-09,1;UBERON:0001021,5.31e-09,1;UBERON:0003902,5.31e-09,1;UBERON:0005425,5.31e-09,1;UBERON:0000970,8.16e-09,21;UBERON:0002104,8.16e-09,21;UBERON:0001801,9.18e-09,14;UBERON:0010077,1.77e-08,4;UBERON:0005389,1.77e-08,4;UBERON:0000484,1.77e-08,4;UBERON:0002546,1.77e-08,4;UBERON:0000965,1.77e-08,4;UBERON:0001803,1.77e-08,4;UBERON:0003073,1.77e-08,4;UBERON:0005426,1.77e-08,4;UBERON:0001456,2.09e-08,22;UBERON:0000488,2.22e-08,4;UBERON:0000020,1.09e-07,24;UBERON:0001032,1.09e-07,24;UBERON:0004456,1.09e-07,24|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369363174230364,0.204000691244253,0,0.572471974262113,0.958120975510189,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661743720148475,1.10864698731282,1.05401742831751,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0.725627385107593,0,0.36497735907583,0,0,0,0,0,0,0,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,1.44331342025273,0.927443239800615,1.05667824812239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5080 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8620 | |||
|TSSclassifier=S | |||
|UniProt=E9PKM0 | |||
|association_with_transcript=-11bp_to_ENST00000524853_5end | |||
|description=CAGE_peak_13_at_PAX6_5end | |||
|id=chr11:31833736..31833778,- | |||
|ontology_enrichment_celltype=CL:0002319!5.90e-07!25;CL:0000064!1.00e-06!3;CL:0005012!1.00e-06!3;CL:0000067!1.00e-06!3;CL:0002304!1.00e-06!3 | |||
|ontology_enrichment_celltype_v019=CL:0000047;4.07e-16;2!CL:0000064;4.65e-11;3!CL:0000067;4.65e-11;3!CL:0005012;4.65e-11;3!CL:0002304;4.65e-11;3!CL:0000306;1.63e-08;4!CL:0002222;1.63e-08;4!CL:0002224;1.63e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,6.99e-11,3;CL:0000067,6.99e-11,3;CL:0005012,6.99e-11,3;CL:0002304,6.99e-11,3;CL:0000047,2.46e-09,8;CL:0000306,1.77e-08,4;CL:0002222,1.77e-08,4;CL:0002224,1.77e-08,4 | |||
|ontology_enrichment_development_v019=UBERON:0005425;6.46e-09;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:6193;2.13e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:6193,2.22e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0003075!3.57e-34!86;UBERON:0007284!3.57e-34!86;UBERON:0002346!1.42e-33!90;UBERON:0000073!7.20e-32!94;UBERON:0001016!7.20e-32!94;UBERON:0005743!8.00e-30!86;UBERON:0003056!2.53e-26!61;UBERON:0001049!5.08e-26!57;UBERON:0005068!5.08e-26!57;UBERON:0006241!5.08e-26!57;UBERON:0007135!5.08e-26!57;UBERON:0001017!1.38e-25!82;UBERON:0000924!7.07e-22!173;UBERON:0006601!7.07e-22!173;UBERON:0004121!8.06e-22!169;UBERON:0002616!2.01e-21!59;UBERON:0000955!3.21e-19!69;UBERON:0006238!3.21e-19!69;UBERON:0000033!3.53e-18!123;UBERON:0000153!1.30e-17!129;UBERON:0007811!1.30e-17!129;UBERON:0002780!1.20e-16!41;UBERON:0001890!1.20e-16!41;UBERON:0006240!1.20e-16!41;UBERON:0003080!4.24e-16!42;UBERON:0007625!9.28e-16!11;UBERON:0001893!1.26e-15!34;UBERON:0002791!1.00e-14!33;UBERON:0002104!2.79e-14!21;UBERON:0002020!3.88e-14!34;UBERON:0003528!3.88e-14!34;UBERON:0001869!1.11e-13!32;UBERON:0000970!8.16e-13!20;UBERON:0001032!5.23e-12!24;UBERON:0004456!5.23e-12!24;UBERON:0003076!1.06e-11!15;UBERON:0003057!1.06e-11!15;UBERON:0000019!1.54e-11!19;UBERON:0000047!1.54e-11!19;UBERON:0004088!1.54e-11!19;UBERON:0003072!1.54e-11!19;UBERON:0003071!1.54e-11!19;UBERON:0004128!1.54e-11!19;UBERON:0000020!1.09e-10!23;UBERON:0001456!3.82e-10!21;UBERON:0000956!7.78e-10!25;UBERON:0000203!7.78e-10!25;UBERON:0004732!1.66e-09!13;UBERON:0000488!3.92e-08!4;UBERON:0007023!4.00e-08!115;UBERON:0004733!4.77e-08!12;UBERON:0002028!4.77e-08!12;UBERON:0007277!4.77e-08!12;UBERON:0001801!1.17e-07!14;UBERON:0002619!9.65e-07!22;UBERON:0000483!9.91e-07!309;UBERON:0001778!1.00e-06!3;UBERON:0001775!1.00e-06!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;3.17e-11;11!UBERON:0001778;4.65e-11;3!UBERON:0001775;4.65e-11;3!UBERON:0000941;6.46e-09;1!UBERON:0001785;6.46e-09;1!UBERON:0002464;6.46e-09;1!UBERON:0004904;6.46e-09;1!UBERON:0001021;6.46e-09;1!UBERON:0002104;7.17e-09;21!UBERON:0001801;7.44e-09;14!UBERON:0010077;1.63e-08;4!UBERON:0005389;1.63e-08;4!UBERON:0000488;1.63e-08;4!UBERON:0000484;1.63e-08;4!UBERON:0000965;1.63e-08;4!UBERON:0001803;1.63e-08;4!UBERON:0001032;9.72e-08;24!UBERON:0004456;9.72e-08;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,4.15e-11,11;UBERON:0001778,6.99e-11,3;UBERON:0001775,6.99e-11,3;UBERON:0000019,2.90e-09,20;UBERON:0000047,2.90e-09,20;UBERON:0010312,2.90e-09,20;UBERON:0004088,2.90e-09,20;UBERON:0010230,2.90e-09,20;UBERON:0003072,2.90e-09,20;UBERON:0004128,2.90e-09,20;UBERON:0003071,2.90e-09,20;UBERON:0000941,5.31e-09,1;UBERON:0001785,5.31e-09,1;UBERON:0002464,5.31e-09,1;UBERON:0004904,5.31e-09,1;UBERON:0001021,5.31e-09,1;UBERON:0003902,5.31e-09,1;UBERON:0005425,5.31e-09,1;UBERON:0000970,8.16e-09,21;UBERON:0002104,8.16e-09,21;UBERON:0001801,9.18e-09,14;UBERON:0010077,1.77e-08,4;UBERON:0005389,1.77e-08,4;UBERON:0000484,1.77e-08,4;UBERON:0002546,1.77e-08,4;UBERON:0000965,1.77e-08,4;UBERON:0001803,1.77e-08,4;UBERON:0003073,1.77e-08,4;UBERON:0005426,1.77e-08,4;UBERON:0001456,2.09e-08,22;UBERON:0000488,2.22e-08,4;UBERON:0000020,1.09e-07,24;UBERON:0001032,1.09e-07,24;UBERON:0004456,1.09e-07,24 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369363174230364,0.204000691244253,0,0.572471974262113,0.958120975510189,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661743720148475,1.10864698731282,1.05401742831751,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0.725627385107593,0,0.36497735907583,0,0,0,0,0,0,0,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,1.44331342025273,0.927443239800615,1.05667824812239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77866236955724,1.30139853857622,0,0.335032530668698,2.55175500661265,0,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164254312027618,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512900250232778,0.328014645699706,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.92349595790849,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0,0.445234820091624,0,0,0.19924798825107,0,1.0077309914171,0,0,0,0,0,0,0,0,0,0,0.371072392647405,0,0,0,0,0,0,0,0,0,1.56262495439963,0,0.482385754501632,0,0.552896299656123,0.591095237907095,0.219385397153973,0,0,0,0,0,0.0897576444097721,0.651884231532048,0,0,0,0,0,0,0.225595660617181,0,0.503464760927528,2.46679852541441,0,0.843992258112108,0,0,0,0,0,0,0.593042257361244,1.35920332841153,1.25306339406546,0.134802265961354,0,0,0,0.19566461893209,1.45668227720456,0,0,0.61214552326098,0,0,0.829505531177977,0,0,0,0,0,0,0,0,0,0,4.64362287673365,0,0,0,0,0,0.451961481561065,0,0,0.126621591911757,0.391102765469606,0,0,0,0,6.98673236612086,0,0.432164393964449,0.621262677827163,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0824158583811665,0,0.0984274815147488,0,0.795229689809303,0.408610218334727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500763722825999,1.72022758707021,0.332787154610557,0.124192805882767,0.138348634936231,0,0,0,0,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,2.3489486276869,0,0.231522474323834,0,0,0,0,0.883445729729405,0,0.168942440653073,0,0,0,0,0,0,0,0.982829546539238,0,0,0,0,0,0,0,0,0,0,2.04867141653695,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0.159633859057151,0,0,0.0691572524642179,0,1.42769420259154,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0.781078098613847,0.206686796501184,0.126831620387814,1.09394961803644,0,0,0.175871244359621,0,1.07140367175657,0,0,0.227662191351298,0,0,0,0,0,0.118193840883968,0,0,0.314231179832004,0,0,0,0,0.142953088353313,0,0,6.25889780289286,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0.647428837187895,0,0,0,0,2.18845852677505,12.0109291685344,0,0.219881033490858,0,0,0,0,0,0,0.196308467114945,0.297046400327086,0.4226557275834,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0.436350690340377,0,0,0,0,0.504665699340316,0,0.126698501011437,0.101988829741982,1.06886962106224,0.0918948995348449,0,0,0.267964130156178,0,0.20686599172379,0,0,0.0645889098360061,0,0.112131862580613,0,0,0,0,0,0,0,0,0.213454691755431,0,0,0,0,0.406896178315738,0,0,0 | |||
|short_description=p13@PAX6 | |||
}} |
Revision as of 17:27, 10 September 2013
Short description: | p13@PAX6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_13_at_PAX6_5end |
Coexpression cluster: | NA |
Association with transcript: | -11bp_to_ENST00000524853_5end |
EntrezGene: | PAX6 |
HGNC: | 8620 |
UniProt: | E9PKM0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 6.99e-11 | 3 |
ciliated epithelial cell | 6.99e-11 | 3 |
multi-ciliated epithelial cell | 6.99e-11 | 3 |
non-pigmented ciliary epithelial cell | 6.99e-11 | 3 |
neuronal stem cell | 2.46e-09 | 8 |
crystallin accumulating cell | 1.77e-08 | 4 |
vertebrate lens cell | 1.77e-08 | 4 |
lens epithelial cell | 1.77e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
pigment epithelium of eye | 4.15e-11 | 11 |
ciliary epithelium | 6.99e-11 | 3 |
ciliary body | 6.99e-11 | 3 |
camera-type eye | 2.90e-09 | 20 |
simple eye | 2.90e-09 | 20 |
immature eye | 2.90e-09 | 20 |
ocular region | 2.90e-09 | 20 |
eyeball of camera-type eye | 2.90e-09 | 20 |
optic cup | 2.90e-09 | 20 |
optic vesicle | 2.90e-09 | 20 |
eye primordium | 2.90e-09 | 20 |
cranial nerve II | 5.31e-09 | 1 |
cranial nerve | 5.31e-09 | 1 |
nerve trunk | 5.31e-09 | 1 |
nerve connecting eye with brain | 5.31e-09 | 1 |
nerve | 5.31e-09 | 1 |
retinal neural layer | 5.31e-09 | 1 |
presumptive neural retina | 5.31e-09 | 1 |
eye | 8.16e-09 | 21 |
visual system | 8.16e-09 | 21 |
anterior segment of eyeball | 9.18e-09 | 14 |
cuboidal epithelium | 1.77e-08 | 4 |
transparent eye structure | 1.77e-08 | 4 |
simple cuboidal epithelium | 1.77e-08 | 4 |
cranial placode | 1.77e-08 | 4 |
lens of camera-type eye | 1.77e-08 | 4 |
epithelium of lens | 1.77e-08 | 4 |
lens placode | 1.77e-08 | 4 |
lens vesicle | 1.77e-08 | 4 |
face | 2.09e-08 | 22 |
atypical epithelium | 2.22e-08 | 4 |
sense organ | 1.09e-07 | 24 |
sensory system | 1.09e-07 | 24 |
entire sense organ system | 1.09e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
epithelioid sarcoma | 2.22e-09 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.