FFCP PHASE1:Hg19::chr19:10687983..10687998,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C2474|description=CAGE_peak_at_chr19:10687983..10687998,-|id=chr19:10687983..10687998,-|ontology_enrichment_celltype=CL:0000066!4.05e-27!254;CL:0000077!1.02e-26!19;CL:1000497!1.13e-13!18;CL:0002518!1.13e-13!18;CL:1000449!3.00e-13!16;CL:1000507!4.23e-13!12;CL:1000494!4.23e-13!12;CL:0002681!1.67e-09!13;CL:0002584!1.67e-09!13;CL:0000213!6.73e-08!57;CL:0000215!6.73e-08!57|ontology_enrichment_celltype_v019=CL:0000077;7.70e-31;19!CL:1000507;2.52e-27;10!CL:1000494;2.52e-27;10!CL:1000497;3.67e-23;17!CL:0002518;3.67e-23;17!CL:1000449;1.00e-21;15!CL:0002681;1.10e-17;12!CL:0002584;1.10e-17;12!CL:0000239;2.24e-11;3!CL:1000615;2.24e-11;3!CL:0002306;2.24e-11;3!CL:0000650;3.25e-08;2!CL:1000500;3.25e-08;2!CL:1000618;3.25e-08;2!CL:1001318;3.25e-08;2!CL:0002173;3.25e-08;2|ontology_enrichment_celltype_v019_2=CL:0000077,9.91e-31,19;CL:1000507,1.81e-27,10;CL:1000494,1.81e-27,10;CL:1000497,2.90e-23,17;CL:0002518,2.90e-23,17;CL:1000449,7.44e-22,15;CL:0000066,1.78e-19,253;CL:0002681,8.20e-18,12;CL:0002584,8.20e-18,12;CL:0000239,1.62e-11,3;CL:1000615,1.62e-11,3;CL:0002306,1.62e-11,3;CL:0000213,7.03e-11,58;CL:0000215,7.03e-11,58;CL:0000650,2.71e-08,2;CL:1000500,2.71e-08,2;CL:1000618,2.71e-08,2;CL:1001318,2.71e-08,2;CL:0002173,2.71e-08,2;CL:0000076,3.31e-07,63|ontology_enrichment_development_v019=UBERON:0008947;1.27e-16;29|ontology_enrichment_disease=DOID:305!1.86e-18!106;DOID:0050687!3.93e-17!143;DOID:14566!2.11e-16!239;DOID:162!9.59e-16!235|ontology_enrichment_disease_v019=DOID:4468;8.32e-09;2|ontology_enrichment_disease_v019_2=DOID:162,1.31e-13,235;DOID:14566,3.85e-13,239;DOID:305,7.69e-13,106;DOID:0050687,3.11e-12,143;DOID:4468,8.82e-09,2|ontology_enrichment_uberon=UBERON:0005172!9.97e-19!55;UBERON:0005173!9.97e-19!55;UBERON:0001737!1.03e-16!9;UBERON:0002417!5.57e-16!61;UBERON:0000916!5.57e-16!61;UBERON:0002113!3.04e-14!27;UBERON:0003918!3.04e-14!27;UBERON:0005095!3.04e-14!27;UBERON:0007687!3.04e-14!27;UBERON:0004211!3.00e-13!16;UBERON:0001285!3.00e-13!16;UBERON:0007684!3.00e-13!16;UBERON:0003220!3.00e-13!16;UBERON:0004208!3.00e-13!16;UBERON:0001851!3.41e-13!16;UBERON:0009773!4.23e-13!12;UBERON:0001231!4.23e-13!12;UBERON:0004810!4.23e-13!12;UBERON:0006555!2.84e-12!17;UBERON:0005103!2.84e-12!17;UBERON:0000083!2.84e-12!17;UBERON:0009201!2.84e-12!17;UBERON:0004819!2.84e-12!17;UBERON:0006553!2.84e-12!17;UBERON:0003074!2.84e-12!17;UBERON:0003060!2.84e-12!17;UBERON:0009569!1.19e-11!113;UBERON:0000080!2.09e-11!18;UBERON:0002120!2.09e-11!18;UBERON:0004875!2.09e-11!18;UBERON:0005721!2.09e-11!18;UBERON:0005754!2.09e-11!18;UBERON:0007297!2.09e-11!18;UBERON:0000489!3.09e-11!32;UBERON:0005177!3.52e-11!107;UBERON:0006554!5.18e-11!44;UBERON:0001557!5.30e-11!19;UBERON:0001008!1.23e-10!45;UBERON:0004876!6.10e-10!20;UBERON:0001225!1.67e-09!13;UBERON:0008987!1.67e-09!13;UBERON:0000072!2.48e-09!46;UBERON:0003887!2.57e-09!21;UBERON:0003064!9.47e-09!37;UBERON:0000353!2.04e-08!17;UBERON:0000065!3.15e-08!53;UBERON:0000058!4.03e-08!26;UBERON:0008947!6.18e-08!38;UBERON:0003258!6.18e-08!38;UBERON:0005911!4.94e-07!82;UBERON:0004119!7.09e-07!169;UBERON:0000925!7.09e-07!169;UBERON:0006595!7.09e-07!169|ontology_enrichment_uberon_v019=UBERON:0001737;6.02e-34;9!UBERON:0001557;6.02e-34;9!UBERON:0004211;2.52e-27;10!UBERON:0009773;2.52e-27;10!UBERON:0001231;2.52e-27;10!UBERON:0004810;2.52e-27;10!UBERON:0002113;2.58e-22;24!UBERON:0011143;2.58e-22;24!UBERON:0006555;1.00e-21;15!UBERON:0004819;1.00e-21;15!UBERON:0001285;1.00e-21;15!UBERON:0007684;1.00e-21;15!UBERON:0000489;5.88e-18;29!UBERON:0001851;8.51e-18;15!UBERON:0001225;1.10e-17;12!UBERON:0008987;1.10e-17;12!UBERON:0000353;1.81e-17;15!UBERON:0006554;2.92e-17;30!UBERON:0001008;2.92e-17;30!UBERON:0005172;1.24e-11;52!UBERON:0005173;1.24e-11;52!UBERON:0000072;1.99e-11;37!UBERON:0006853;2.24e-11;3!UBERON:0007685;2.24e-11;3!UBERON:0004134;2.24e-11;3!UBERON:0000065;9.70e-09;44!UBERON:0003567;3.25e-08;2!UBERON:0003838;3.25e-08;2!UBERON:0003586;3.25e-08;2!UBERON:0005169;3.25e-08;2!UBERON:0002321;3.25e-08;2!UBERON:0005215;3.25e-08;2!UBERON:0002303;3.25e-08;2!UBERON:0002319;3.25e-08;2!UBERON:0002417;3.45e-08;58!UBERON:0000916;3.45e-08;58|ontology_enrichment_uberon_v019_2=UBERON:0001737,4.65e-34,9;UBERON:0004810,1.81e-27,10;UBERON:0004211,7.44e-22,15;UBERON:0009773,7.44e-22,15;UBERON:0001231,7.44e-22,15;UBERON:0001285,7.44e-22,15;UBERON:0007684,7.44e-22,15;UBERON:0004208,7.44e-22,15;UBERON:0002113,1.95e-20,26;UBERON:0003918,1.95e-20,26;UBERON:0011143,1.95e-20,26;UBERON:0005095,1.95e-20,26;UBERON:0007687,1.95e-20,26;UBERON:0006555,2.30e-20,16;UBERON:0004819,2.30e-20,16;UBERON:0001851,6.25e-18,15;UBERON:0001225,8.20e-18,12;UBERON:0008987,8.20e-18,12;UBERON:0000353,1.43e-17,15;UBERON:0005172,4.09e-17,54;UBERON:0005173,4.09e-17,54;UBERON:0000489,1.16e-16,31;UBERON:0001557,3.56e-15,19;UBERON:0002417,5.73e-15,60;UBERON:0000916,5.73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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C2474 | |||
|description=CAGE_peak_at_chr19:10687983..10687998,- | |||
|id=chr19:10687983..10687998,- | |||
|ontology_enrichment_celltype=CL:0000066!4.05e-27!254;CL:0000077!1.02e-26!19;CL:1000497!1.13e-13!18;CL:0002518!1.13e-13!18;CL:1000449!3.00e-13!16;CL:1000507!4.23e-13!12;CL:1000494!4.23e-13!12;CL:0002681!1.67e-09!13;CL:0002584!1.67e-09!13;CL:0000213!6.73e-08!57;CL:0000215!6.73e-08!57 | |||
|ontology_enrichment_celltype_v019=CL:0000077;7.70e-31;19!CL:1000507;2.52e-27;10!CL:1000494;2.52e-27;10!CL:1000497;3.67e-23;17!CL:0002518;3.67e-23;17!CL:1000449;1.00e-21;15!CL:0002681;1.10e-17;12!CL:0002584;1.10e-17;12!CL:0000239;2.24e-11;3!CL:1000615;2.24e-11;3!CL:0002306;2.24e-11;3!CL:0000650;3.25e-08;2!CL:1000500;3.25e-08;2!CL:1000618;3.25e-08;2!CL:1001318;3.25e-08;2!CL:0002173;3.25e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,9.91e-31,19;CL:1000507,1.81e-27,10;CL:1000494,1.81e-27,10;CL:1000497,2.90e-23,17;CL:0002518,2.90e-23,17;CL:1000449,7.44e-22,15;CL:0000066,1.78e-19,253;CL:0002681,8.20e-18,12;CL:0002584,8.20e-18,12;CL:0000239,1.62e-11,3;CL:1000615,1.62e-11,3;CL:0002306,1.62e-11,3;CL:0000213,7.03e-11,58;CL:0000215,7.03e-11,58;CL:0000650,2.71e-08,2;CL:1000500,2.71e-08,2;CL:1000618,2.71e-08,2;CL:1001318,2.71e-08,2;CL:0002173,2.71e-08,2;CL:0000076,3.31e-07,63 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.27e-16;29 | |||
|ontology_enrichment_disease=DOID:305!1.86e-18!106;DOID:0050687!3.93e-17!143;DOID:14566!2.11e-16!239;DOID:162!9.59e-16!235 | |||
|ontology_enrichment_disease_v019=DOID:4468;8.32e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.31e-13,235;DOID:14566,3.85e-13,239;DOID:305,7.69e-13,106;DOID:0050687,3.11e-12,143;DOID:4468,8.82e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0005172!9.97e-19!55;UBERON:0005173!9.97e-19!55;UBERON:0001737!1.03e-16!9;UBERON:0002417!5.57e-16!61;UBERON:0000916!5.57e-16!61;UBERON:0002113!3.04e-14!27;UBERON:0003918!3.04e-14!27;UBERON:0005095!3.04e-14!27;UBERON:0007687!3.04e-14!27;UBERON:0004211!3.00e-13!16;UBERON:0001285!3.00e-13!16;UBERON:0007684!3.00e-13!16;UBERON:0003220!3.00e-13!16;UBERON:0004208!3.00e-13!16;UBERON:0001851!3.41e-13!16;UBERON:0009773!4.23e-13!12;UBERON:0001231!4.23e-13!12;UBERON:0004810!4.23e-13!12;UBERON:0006555!2.84e-12!17;UBERON:0005103!2.84e-12!17;UBERON:0000083!2.84e-12!17;UBERON:0009201!2.84e-12!17;UBERON:0004819!2.84e-12!17;UBERON:0006553!2.84e-12!17;UBERON:0003074!2.84e-12!17;UBERON:0003060!2.84e-12!17;UBERON:0009569!1.19e-11!113;UBERON:0000080!2.09e-11!18;UBERON:0002120!2.09e-11!18;UBERON:0004875!2.09e-11!18;UBERON:0005721!2.09e-11!18;UBERON:0005754!2.09e-11!18;UBERON:0007297!2.09e-11!18;UBERON:0000489!3.09e-11!32;UBERON:0005177!3.52e-11!107;UBERON:0006554!5.18e-11!44;UBERON:0001557!5.30e-11!19;UBERON:0001008!1.23e-10!45;UBERON:0004876!6.10e-10!20;UBERON:0001225!1.67e-09!13;UBERON:0008987!1.67e-09!13;UBERON:0000072!2.48e-09!46;UBERON:0003887!2.57e-09!21;UBERON:0003064!9.47e-09!37;UBERON:0000353!2.04e-08!17;UBERON:0000065!3.15e-08!53;UBERON:0000058!4.03e-08!26;UBERON:0008947!6.18e-08!38;UBERON:0003258!6.18e-08!38;UBERON:0005911!4.94e-07!82;UBERON:0004119!7.09e-07!169;UBERON:0000925!7.09e-07!169;UBERON:0006595!7.09e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;6.02e-34;9!UBERON:0001557;6.02e-34;9!UBERON:0004211;2.52e-27;10!UBERON:0009773;2.52e-27;10!UBERON:0001231;2.52e-27;10!UBERON:0004810;2.52e-27;10!UBERON:0002113;2.58e-22;24!UBERON:0011143;2.58e-22;24!UBERON:0006555;1.00e-21;15!UBERON:0004819;1.00e-21;15!UBERON:0001285;1.00e-21;15!UBERON:0007684;1.00e-21;15!UBERON:0000489;5.88e-18;29!UBERON:0001851;8.51e-18;15!UBERON:0001225;1.10e-17;12!UBERON:0008987;1.10e-17;12!UBERON:0000353;1.81e-17;15!UBERON:0006554;2.92e-17;30!UBERON:0001008;2.92e-17;30!UBERON:0005172;1.24e-11;52!UBERON:0005173;1.24e-11;52!UBERON:0000072;1.99e-11;37!UBERON:0006853;2.24e-11;3!UBERON:0007685;2.24e-11;3!UBERON:0004134;2.24e-11;3!UBERON:0000065;9.70e-09;44!UBERON:0003567;3.25e-08;2!UBERON:0003838;3.25e-08;2!UBERON:0003586;3.25e-08;2!UBERON:0005169;3.25e-08;2!UBERON:0002321;3.25e-08;2!UBERON:0005215;3.25e-08;2!UBERON:0002303;3.25e-08;2!UBERON:0002319;3.25e-08;2!UBERON:0002417;3.45e-08;58!UBERON:0000916;3.45e-08;58 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44076983047484,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201504196455281,0,0.193260853163297,0,0,0.121973706129595,0,0,0.207322110030741,0.252320850875628,0,0,0,0,0,0,4.61396520155391,5.22612539242115,5.06123162755312,4.85293480022533,5.88274499049497,3.55905928666645,6.60673409984806,6.67152981426177,6.54070166808864,0,1.40241773803446,0.8231480226628,0,0,0,0.590789906681404,0,0.737930631258681,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.531876233169741,1.04007436911366,0,0,0,0,0,0,0,0,0,4.52159065589379,0.871533458600294,5.09862255028491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0,0,0,0,0,2.70719767744447,1.23224539367064,3.13739907670742,1.46139224653261,0.422206515571503,0,0,0.431831832204279,1.54227252690289,2.98041081298238,2.50844886927427,1.78413391131527,3.3243040357149,2.46262230194396,0,0,0.512900250232778,0.328014645699706,0.325378394664303,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0.953150969619124,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,0,0,0.43050537267123,0,0.443430153536676,0,0,0,0,0,0,0,0,0,3.20472213382419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0.606802608747567,0,0.284136146806413,0,0,0,0,0,0,0,0,0,0,0,1.32949287252801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0.435753854075961,0,0,0,0,0.0897576444097721,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,4.43095935508857,5.22344986109273,0.706765357169704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.870806981601766,1.09633975629278,1.64230914106418,0,0,0,0,0,0,0.195551382734803,0.0801588202515337,0,0,0,0,0,0,0,0,2.31037150325144,1.67364554099733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.91497774536727,1.89556474276683,1.81989568406299,0.295282444544246,0,0,0,0.160753148465019,0.137539436597234,0,0,0,0,0,2.44297692627514,0.577000469484979,0,0,0,0,0,0.25426853765475,0,0.864221491201268,0,0,0,0.851940108927109,0,0,0,0,0,4.27717094710824,0,0,0,0,0,0,0,0,0.544017803369474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0.521745061811734,0.601030435988874,4.95046775819434,0,0,0.966695013382396,0,0,0,0,0,0,0.385239660814607,5.57548137574807,1.30497145982606,2.26705925512272,0.463044948647668,0.734210113519403,3.22359913946677,1.54400723580486,5.04353314031026,0.883445729729405,6.94490537775293,8.10923715134749,2.30617366729152,22.1075418707967,3.03859956177382,0,0,0,0,0,1.2288645437686,0,0,0,0,4.54012762853469,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60114149657094,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0,0,0,0,1.41193548092464,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0.514464028312255,0,0,0,0,0,0,0,0,4.31855182437243,0,0,0,0.23248285073625,0,0,0,0,0,0,0.118332000730565,0,0,0.22910686854405,0,0.955538938977433,0.559277158988962,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0.253397002022874,0.61193297845189,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,1.12131862580613,0.0636471582781649,0.404234377916439,0.217716747896961,0,0,0,0,0,1.28072815053259,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr19:10687983..10687998,- | |||
}} |
Revision as of 18:35, 11 September 2013
Short description: | p@chr19:10687983..10687998, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:10687983..10687998, - |
Coexpression cluster: | C2474_mesothelioma_Hep2_clear_Renal_nonsmall_renal_lung |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 9.91e-31 | 19 |
kidney tubule cell | 1.81e-27 | 10 |
nephron tubule epithelial cell | 1.81e-27 | 10 |
kidney cell | 2.90e-23 | 17 |
kidney epithelial cell | 2.90e-23 | 17 |
epithelial cell of nephron | 7.44e-22 | 15 |
epithelial cell | 1.78e-19 | 253 |
kidney cortical cell | 8.20e-18 | 12 |
renal cortical epithelial cell | 8.20e-18 | 12 |
brush border epithelial cell | 1.62e-11 | 3 |
kidney cortex tubule cell | 1.62e-11 | 3 |
epithelial cell of proximal tubule | 1.62e-11 | 3 |
lining cell | 7.03e-11 | 58 |
barrier cell | 7.03e-11 | 58 |
mesangial cell | 2.71e-08 | 2 |
kidney interstitial cell | 2.71e-08 | 2 |
juxtaglomerular complex cell | 2.71e-08 | 2 |
renal interstitial pericyte | 2.71e-08 | 2 |
extraglomerular mesangial cell | 2.71e-08 | 2 |
squamous epithelial cell | 3.31e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.31e-13 | 235 |
disease of cellular proliferation | 3.85e-13 | 239 |
carcinoma | 7.69e-13 | 106 |
cell type cancer | 3.11e-12 | 143 |
clear cell adenocarcinoma | 8.82e-09 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.