FFCP PHASE1:Hg19::chr2:202645835..202645846,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=57679|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=443|TSSclassifier=S|UniProt=Q96Q42,A8K4R4|association_with_transcript=48bp_to_NM_001135745,NM_020919,uc002uyo.2,uc002uyp.3,uc002uyq.2,uc002uyr.2_5end|description=CAGE_peak_3_at_ALS2_5end|id=chr2:202645835..202645846,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000097;4.74e-37;5!CL:0000163;1.51e-20;9!CL:0002032;2.05e-08;1!CL:0000222;2.05e-08;1!CL:0000557;2.05e-08;1|ontology_enrichment_celltype_v019_2=CL:0000097,3.08e-37,5;CL:0002028,3.08e-37,5;CL:0000163,1.19e-20,9|ontology_enrichment_development_v019=UBERON:0006215;3.00e-22;3!UBERON:0005425;2.05e-08;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:8552;2.05e-08;1|ontology_enrichment_disease_v019_2=DOID:8552,1.02e-08,1|ontology_enrichment_uberon=UBERON:0001049!2.23e-11!57;UBERON:0005068!2.23e-11!57;UBERON:0006241!2.23e-11!57;UBERON:0007135!2.23e-11!57;UBERON:0002616!3.34e-11!59;UBERON:0002780!3.60e-11!41;UBERON:0001890!3.60e-11!41;UBERON:0006240!3.60e-11!41;UBERON:0003080!1.16e-10!42;UBERON:0001893!2.40e-10!34;UBERON:0001950!2.83e-10!20;UBERON:0002791!7.53e-10!33;UBERON:0002619!1.07e-09!22;UBERON:0000073!1.53e-09!94;UBERON:0001016!1.53e-09!94;UBERON:0005743!2.21e-09!86;UBERON:0001869!2.57e-09!32;UBERON:0002020!3.87e-09!34;UBERON:0003528!3.87e-09!34;UBERON:0002346!8.72e-09!90;UBERON:0000955!1.09e-08!69;UBERON:0006238!1.09e-08!69;UBERON:0003075!1.17e-08!86;UBERON:0007284!1.17e-08!86;UBERON:0001017!1.18e-08!82;UBERON:0000956!1.43e-08!25;UBERON:0000203!1.43e-08!25;UBERON:0003056!9.86e-08!61|ontology_enrichment_uberon_v019=UBERON:0002037;2.07e-11;6!UBERON:0004732;4.94e-09;13!UBERON:0000941;2.05e-08;1!UBERON:0001785;2.05e-08;1!UBERON:0002464;2.05e-08;1!UBERON:0004904;2.05e-08;1!UBERON:0001021;2.05e-08;1!UBERON:0002680;9.13e-08;9!UBERON:0001895;9.13e-08;9|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.45e-11,6;UBERON:0006215,1.45e-11,6;UBERON:0004732,3.87e-09,13;UBERON:0000941,1.84e-08,1;UBERON:0001785,1.84e-08,1;UBERON:0002464,1.84e-08,1;UBERON:0004904,1.84e-08,1;UBERON:0001021,1.84e-08,1;UBERON:0003902,1.84e-08,1;UBERON:0005425,1.84e-08,1;UBERON:0002680,7.24e-08,9;UBERON:0001895,7.24e-08,9;UBERON:0010092,7.24e-08,9|phase1_expression=0,0,0.281908808191942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0,0,0.125542639594803,0.0764134057479513,0.0821005894499457,0,0,0,0,0,0,0,0.154934401160603,0.142169232487422,0.587200878669695,0,0,0,0,0,0.257575567634187,0.436194716338694,0,0,0,0,0,0,0.256160706529101,0,0.344745680736619,0,0,0,0.272906150057846,0.449446968890169,0,0,0,0,0,0.852449501065388,0,0.56738522469114,0,0,0.521482918420201,0,0,0.368277635987565,0.316462387440884,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764546456250458,1.32171328579026,0.560508562981536,0,0.590129310341499,0,0.411202997999018,0,0.32592226663359,0,0,0,0.294605907474837,0,0,0,0,0.164437904603676,0,0,0.444859689486181,0.267540828089713,0,0.113309342697566,0,0.34362744548263,0.253019692019503,0,0,0,0.150575119077773,0.127986611154418,0,0,0,0,0.802320587350522,0.724122019413995,2.43806866313962,0,0,0,0,0,0,0.486634870302636,0.189069634328136,0,0,0.0654895377488563,0,0,0,0,0,0,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267899184852239,0.44905874525234,0.112611480483322,0,0,0,0,0,0.436094052142534,0,0.12663051166458,0,0,0,0,0,0.24666754841716,0,0,0,0.151357427644931,0,0,0,0,0.149448680551801,0.117434498643765,0,0.140450806702248,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0,0.640672166455702,0,0,0,0,0,0.506328996723799,0,0,0.276149695926898,0.161646056818812,0,0.503760491138201,0,0.193260853163297,0,0,0.243947412259191,0.132529768321485,0.348581828608555,0.10366105501537,0.756962552626885,0,0,0,0,0,0,0,0,0.241011029883482,0,0,0,0,0,0.38474715694639,0,0,0,0,0,0.982827216677626,0.590789906681404,0.441463099414651,0.245976877086227,0.343135620597051,0,0,0.100528972411631,0,0,0,0,0.115930404975077,0,0.288732895522148,0,0,0,0,0.246217006087397,0,0,0,0.335964256397719,0,0,0.290633938513962,0,4.92663237895944,2.0251139823042,1.86595303986695,5.90891809009542,4.4184851699233,0.126995788584338,0,0,0,0.102827492703324,0,0.571652865261156,0.112131084345361,0,0.1466765716419,0.258543431515556,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0.788123040807709,0,0.385029108839245,0,0,1.54657762555539,0,1.27587750330633,0,0,0.414415513436035,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0.184369168541703,0,0,0.343143423810856,0,0,0.213455115606889,0,0,0,0,0.153461973288062,0,0,0,0.321707842287215,0,0.154209693802656,0,0,0,0,0.120859449591622,0,0,0,0,0.131124414959424,0,0.0770153371044148,0,1.46139224653261,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0.261435451024901,0,0.328014645699706,0.325378394664303,0,0.366277859273374,0.577566499444116,0,0,0,0,0.154048617114644,0.15350367472613,0,0,0,0,0.178064071293475,0,0.192190067365106,0,0,0,0.31481234683064,0,0,0,0,0,0.286249773483982,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=57679 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=443 | |||
|TSSclassifier=S | |||
|UniProt=Q96Q42,A8K4R4 | |||
|association_with_transcript=48bp_to_NM_001135745,NM_020919,uc002uyo.2,uc002uyp.3,uc002uyq.2,uc002uyr.2_5end | |||
|description=CAGE_peak_3_at_ALS2_5end | |||
|id=chr2:202645835..202645846,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000097;4.74e-37;5!CL:0000163;1.51e-20;9!CL:0002032;2.05e-08;1!CL:0000222;2.05e-08;1!CL:0000557;2.05e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,3.08e-37,5;CL:0002028,3.08e-37,5;CL:0000163,1.19e-20,9 | |||
|ontology_enrichment_development_v019=UBERON:0006215;3.00e-22;3!UBERON:0005425;2.05e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:8552;2.05e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:8552,1.02e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0001049!2.23e-11!57;UBERON:0005068!2.23e-11!57;UBERON:0006241!2.23e-11!57;UBERON:0007135!2.23e-11!57;UBERON:0002616!3.34e-11!59;UBERON:0002780!3.60e-11!41;UBERON:0001890!3.60e-11!41;UBERON:0006240!3.60e-11!41;UBERON:0003080!1.16e-10!42;UBERON:0001893!2.40e-10!34;UBERON:0001950!2.83e-10!20;UBERON:0002791!7.53e-10!33;UBERON:0002619!1.07e-09!22;UBERON:0000073!1.53e-09!94;UBERON:0001016!1.53e-09!94;UBERON:0005743!2.21e-09!86;UBERON:0001869!2.57e-09!32;UBERON:0002020!3.87e-09!34;UBERON:0003528!3.87e-09!34;UBERON:0002346!8.72e-09!90;UBERON:0000955!1.09e-08!69;UBERON:0006238!1.09e-08!69;UBERON:0003075!1.17e-08!86;UBERON:0007284!1.17e-08!86;UBERON:0001017!1.18e-08!82;UBERON:0000956!1.43e-08!25;UBERON:0000203!1.43e-08!25;UBERON:0003056!9.86e-08!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;2.07e-11;6!UBERON:0004732;4.94e-09;13!UBERON:0000941;2.05e-08;1!UBERON:0001785;2.05e-08;1!UBERON:0002464;2.05e-08;1!UBERON:0004904;2.05e-08;1!UBERON:0001021;2.05e-08;1!UBERON:0002680;9.13e-08;9!UBERON:0001895;9.13e-08;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.45e-11,6;UBERON:0006215,1.45e-11,6;UBERON:0004732,3.87e-09,13;UBERON:0000941,1.84e-08,1;UBERON:0001785,1.84e-08,1;UBERON:0002464,1.84e-08,1;UBERON:0004904,1.84e-08,1;UBERON:0001021,1.84e-08,1;UBERON:0003902,1.84e-08,1;UBERON:0005425,1.84e-08,1;UBERON:0002680,7.24e-08,9;UBERON:0001895,7.24e-08,9;UBERON:0010092,7.24e-08,9 | |||
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| |||
|short_description=p3@ALS2 | |||
}} |
Revision as of 16:04, 12 September 2013
Short description: | p3@ALS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_ALS2_5end |
Coexpression cluster: | NA |
Association with transcript: | 48bp_to_NM_001135745, NM_020919, uc002uyo.2, uc002uyp.3, uc002uyq.2, uc002uyr.2_5end |
EntrezGene: | ALS2 |
HGNC: | 443 |
UniProt: | Q96Q42A8K4R4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 3.08e-37 | 5 |
basophil mast progenitor cell | 3.08e-37 | 5 |
endocrine cell | 1.19e-20 | 9 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 1.45e-11 | 6 |
rhombic lip | 1.45e-11 | 6 |
segmental subdivision of nervous system | 3.87e-09 | 13 |
cranial nerve II | 1.84e-08 | 1 |
cranial nerve | 1.84e-08 | 1 |
nerve trunk | 1.84e-08 | 1 |
nerve connecting eye with brain | 1.84e-08 | 1 |
nerve | 1.84e-08 | 1 |
retinal neural layer | 1.84e-08 | 1 |
presumptive neural retina | 1.84e-08 | 1 |
regional part of metencephalon | 7.24e-08 | 9 |
metencephalon | 7.24e-08 | 9 |
future metencephalon | 7.24e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
chronic myeloid leukemia | 1.02e-08 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.