FFCP PHASE1:Hg19::chr22:35783010..35783044,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3162|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5013|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000494998_5end|coexpression_cluster_id=C912|description=CAGE_peak_2_at_HMOX1_5end|id=chr22:35783010..35783044,+|ontology_enrichment_celltype=CL:0002057!6.62e-23!42;CL:0002194!2.36e-22!63;CL:0000576!2.36e-22!63;CL:0000040!2.36e-22!63;CL:0000559!2.36e-22!63;CL:0002009!6.37e-21!65;CL:0000860!4.71e-20!45;CL:0000839!5.49e-19!70;CL:0000557!1.05e-17!71;CL:0000766!1.23e-16!76;CL:0000048!2.86e-15!430;CL:0000723!3.71e-14!436;CL:0000034!1.59e-13!444;CL:0002320!1.70e-10!365;CL:0000134!1.26e-09!358;CL:0000763!4.75e-07!112;CL:0000049!4.75e-07!112;CL:0002371!8.05e-07!591|ontology_enrichment_celltype_v019=CL:0000473;1.69e-28;39!CL:0000234;1.69e-28;39!CL:0000860;2.88e-28;33!CL:0002057;2.88e-28;33!CL:0000576;8.46e-24;48!CL:0000766;1.64e-14;69|ontology_enrichment_celltype_v019_2=CL:0000473,5.23e-40,48;CL:0000234,5.23e-40,48;CL:0002194,1.28e-35,59;CL:0000576,1.28e-35,59;CL:0000040,1.28e-35,59;CL:0000559,1.28e-35,59;CL:0000860,1.22e-34,42;CL:0002057,1.22e-34,42;CL:0002009,5.07e-34,61;CL:0000839,1.87e-30,66;CL:0000557,8.32e-30,67;CL:0000766,7.74e-27,72;CL:0000763,6.48e-17,108;CL:0000049,6.48e-17,108;CL:0000048,1.26e-12,427;CL:0002320,2.66e-12,361;CL:0002087,3.01e-12,115;CL:0000723,4.27e-12,433;CL:0000034,2.05e-11,441;CL:0000134,2.27e-11,354;CL:0002031,2.87e-11,120;CL:0000738,6.97e-11,136;CL:0000219,6.01e-09,386;CL:0002032,1.86e-07,161;CL:0000837,1.86e-07,161;CL:0000988,3.00e-07,177|ontology_enrichment_development_v019=CL:0002057;5.49e-26;42!CL:0000049;4.61e-08;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002204!9.29e-22!167;UBERON:0004765!9.00e-18!101;UBERON:0001434!9.00e-18!101;UBERON:0001474!1.48e-16!86;UBERON:0002371!3.39e-16!80;UBERON:0002405!6.84e-16!115;UBERON:0003081!1.12e-12!216;UBERON:0002193!1.50e-11!112;UBERON:0002390!6.87e-11!102;UBERON:0003061!6.87e-11!102;UBERON:0000926!1.09e-10!448;UBERON:0004120!1.09e-10!448;UBERON:0006603!1.09e-10!448;UBERON:0002384!1.27e-09!375;UBERON:0000055!6.78e-08!69;UBERON:0001637!1.59e-07!42;UBERON:0003509!1.59e-07!42;UBERON:0004572!1.59e-07!42;UBERON:0004573!1.82e-07!33;UBERON:0004571!1.82e-07!33;UBERON:0001981!3.25e-07!60;UBERON:0007500!3.25e-07!60;UBERON:0004537!3.25e-07!60;UBERON:0006965!3.25e-07!60|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.46e-29,76;UBERON:0001474,8.01e-28,82;UBERON:0004765,1.69e-25,90;UBERON:0001434,2.07e-25,100;UBERON:0002405,3.44e-24,93;UBERON:0002204,2.52e-22,167;UBERON:0002390,3.48e-21,98;UBERON:0003061,3.48e-21,98;UBERON:0002193,6.82e-19,108;UBERON:0003081,1.64e-16,203;UBERON:0000926,2.55e-13,315;UBERON:0004120,2.55e-13,315;UBERON:0006603,2.55e-13,315;UBERON:0002384,2.33e-11,371|phase1_expression=0.54503513781167,2.5692062866918,0.281908808191942,1.0007329835313,2.68176656656373,0.872338524100369,0,0,1.30592814099919,0,0,0,0,0.495065411840187,2.31978163009541,0.672325146451775,1.20538905604795,0.730310090387373,0,0.123121058076788,0,1.25381888591235,0,0.136874425072884,0,0.0764134057479513,0.164201178899891,0.0787107813136792,0.393364276848904,0,0.77408061658038,0,0,0,0,0,0,0,0.200544447470142,0.217010870715852,6.04571780447796,5.18229865630367,3.09090681161024,15.1214168330747,14.3592858601748,14.3124596100812,5.34586784883075,9.04569353648017,5.88442104700697,2.3015391385772,3.33008918487831,2.60130452877444,19.9952494827239,24.5284179761854,32.502356782642,20.7066573496865,55.9457607618584,15.955367395601,8.26426509401437,14.4418062184242,8.31138263538754,3.95821560224059,7.77908264724364,4.26224750532694,1.16083695451434,3.40431134814684,0.622822248995575,3.76872997885115,2.60741459210101,1.08594422352558,0,0.368277635987565,0.316462387440884,2.5350634357433,6.80333759888139,1.46761051855863,0.22465726229299,0.300353785683013,0.64290234678832,2.28010194992999,3.18266683518544,1.82664153764634,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,1.50401373190767,1.73815822752988,1.5905718941022,0.486634870302636,0,0,0,0.261958150995425,0,0,0.649094787309367,0.522389211897802,0.531831842075461,0,0,0,0.993812036833525,0.860234595106124,0,1.13061588384802,0.419499436209906,2.20094433552054,1.25396979922086,1.03366703667732,0.35576626268671,0.33472061276467,1.20848795132744,2.28081631715554,0.732186172644509,0.367663080345869,0,0.0892997282840798,0,0.225222960966644,0,2.84779697870439,0.549605231791222,0,0,0,0,0.506522046658319,0.529636723252875,0,0.709336764396714,0,1.06748995729705,0,0.311211035399766,0,0.163461903113459,0,0.576175924479999,0,0,0,0.149448680551801,0.117434498643765,0,0.140450806702248,0,0.122834317311768,0.826606249406124,1.18800285728205,2.47266929278557,0,0,0.168336113954066,0.125118519871964,0,0.438977620880838,2.45190236639216,1.65261864797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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3162 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5013 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000494998_5end | |||
|coexpression_cluster_id=C912 | |||
|description=CAGE_peak_2_at_HMOX1_5end | |||
|id=chr22:35783010..35783044,+ | |||
|ontology_enrichment_celltype=CL:0002057!6.62e-23!42;CL:0002194!2.36e-22!63;CL:0000576!2.36e-22!63;CL:0000040!2.36e-22!63;CL:0000559!2.36e-22!63;CL:0002009!6.37e-21!65;CL:0000860!4.71e-20!45;CL:0000839!5.49e-19!70;CL:0000557!1.05e-17!71;CL:0000766!1.23e-16!76;CL:0000048!2.86e-15!430;CL:0000723!3.71e-14!436;CL:0000034!1.59e-13!444;CL:0002320!1.70e-10!365;CL:0000134!1.26e-09!358;CL:0000763!4.75e-07!112;CL:0000049!4.75e-07!112;CL:0002371!8.05e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.69e-28;39!CL:0000234;1.69e-28;39!CL:0000860;2.88e-28;33!CL:0002057;2.88e-28;33!CL:0000576;8.46e-24;48!CL:0000766;1.64e-14;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,5.23e-40,48;CL:0000234,5.23e-40,48;CL:0002194,1.28e-35,59;CL:0000576,1.28e-35,59;CL:0000040,1.28e-35,59;CL:0000559,1.28e-35,59;CL:0000860,1.22e-34,42;CL:0002057,1.22e-34,42;CL:0002009,5.07e-34,61;CL:0000839,1.87e-30,66;CL:0000557,8.32e-30,67;CL:0000766,7.74e-27,72;CL:0000763,6.48e-17,108;CL:0000049,6.48e-17,108;CL:0000048,1.26e-12,427;CL:0002320,2.66e-12,361;CL:0002087,3.01e-12,115;CL:0000723,4.27e-12,433;CL:0000034,2.05e-11,441;CL:0000134,2.27e-11,354;CL:0002031,2.87e-11,120;CL:0000738,6.97e-11,136;CL:0000219,6.01e-09,386;CL:0002032,1.86e-07,161;CL:0000837,1.86e-07,161;CL:0000988,3.00e-07,177 | |||
|ontology_enrichment_development_v019=CL:0002057;5.49e-26;42!CL:0000049;4.61e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!9.29e-22!167;UBERON:0004765!9.00e-18!101;UBERON:0001434!9.00e-18!101;UBERON:0001474!1.48e-16!86;UBERON:0002371!3.39e-16!80;UBERON:0002405!6.84e-16!115;UBERON:0003081!1.12e-12!216;UBERON:0002193!1.50e-11!112;UBERON:0002390!6.87e-11!102;UBERON:0003061!6.87e-11!102;UBERON:0000926!1.09e-10!448;UBERON:0004120!1.09e-10!448;UBERON:0006603!1.09e-10!448;UBERON:0002384!1.27e-09!375;UBERON:0000055!6.78e-08!69;UBERON:0001637!1.59e-07!42;UBERON:0003509!1.59e-07!42;UBERON:0004572!1.59e-07!42;UBERON:0004573!1.82e-07!33;UBERON:0004571!1.82e-07!33;UBERON:0001981!3.25e-07!60;UBERON:0007500!3.25e-07!60;UBERON:0004537!3.25e-07!60;UBERON:0006965!3.25e-07!60 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.46e-29,76;UBERON:0001474,8.01e-28,82;UBERON:0004765,1.69e-25,90;UBERON:0001434,2.07e-25,100;UBERON:0002405,3.44e-24,93;UBERON:0002204,2.52e-22,167;UBERON:0002390,3.48e-21,98;UBERON:0003061,3.48e-21,98;UBERON:0002193,6.82e-19,108;UBERON:0003081,1.64e-16,203;UBERON:0000926,2.55e-13,315;UBERON:0004120,2.55e-13,315;UBERON:0006603,2.55e-13,315;UBERON:0002384,2.33e-11,371 | |||
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| |||
|short_description=p2@HMOX1 | |||
}} |
Revision as of 11:41, 12 September 2013
Short description: | p2@HMOX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_HMOX1_5end |
Coexpression cluster: | C912_CD14_mesothelioma_tenocyte_migratory_mesenchymal_spleen_CD14CD16 |
Association with transcript: | 0bp_to_ENST00000494998_5end |
EntrezGene: | HMOX1 |
HGNC: | 5013 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 5.23e-40 | 48 |
phagocyte | 5.23e-40 | 48 |
monopoietic cell | 1.28e-35 | 59 |
monocyte | 1.28e-35 | 59 |
monoblast | 1.28e-35 | 59 |
promonocyte | 1.28e-35 | 59 |
classical monocyte | 1.22e-34 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.22e-34 | 42 |
macrophage dendritic cell progenitor | 5.07e-34 | 61 |
myeloid lineage restricted progenitor cell | 1.87e-30 | 66 |
granulocyte monocyte progenitor cell | 8.32e-30 | 67 |
myeloid leukocyte | 7.74e-27 | 72 |
myeloid cell | 6.48e-17 | 108 |
common myeloid progenitor | 6.48e-17 | 108 |
multi fate stem cell | 1.26e-12 | 427 |
connective tissue cell | 2.66e-12 | 361 |
nongranular leukocyte | 3.01e-12 | 115 |
somatic stem cell | 4.27e-12 | 433 |
stem cell | 2.05e-11 | 441 |
mesenchymal cell | 2.27e-11 | 354 |
hematopoietic lineage restricted progenitor cell | 2.87e-11 | 120 |
leukocyte | 6.97e-11 | 136 |
motile cell | 6.01e-09 | 386 |
hematopoietic oligopotent progenitor cell | 1.86e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.86e-07 | 161 |
hematopoietic cell | 3.00e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.46e-29 | 76 |
bone element | 8.01e-28 | 82 |
skeletal element | 1.69e-25 | 90 |
skeletal system | 2.07e-25 | 100 |
immune system | 3.44e-24 | 93 |
musculoskeletal system | 2.52e-22 | 167 |
hematopoietic system | 3.48e-21 | 98 |
blood island | 3.48e-21 | 98 |
hemolymphoid system | 6.82e-19 | 108 |
lateral plate mesoderm | 1.64e-16 | 203 |
mesoderm | 2.55e-13 | 315 |
mesoderm-derived structure | 2.55e-13 | 315 |
presumptive mesoderm | 2.55e-13 | 315 |
connective tissue | 2.33e-11 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.