FFCP PHASE1:Hg19::chr3:13028574..13028588,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9922|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=29112|TSSclassifier=S|UniProt=|association_with_transcript=-38bp_to_ENST00000450726,uc003bxu.3_5end|coexpression_cluster_id=C24|description=CAGE_peak_24_at_IQSEC1_5end|id=chr3:13028574..13028588,-|ontology_enrichment_celltype=CL:0002541!3.03e-25!3;CL:0002586!1.10e-11!3;CL:0000149!5.51e-09!4|ontology_enrichment_celltype_v019=CL:0002541;1.27e-33;3|ontology_enrichment_celltype_v019_2=CL:0002541,1.08e-33,3|ontology_enrichment_development_v019=UBERON:0003056;9.10e-34;3|ontology_enrichment_disease=DOID:1799!1.69e-09!1;DOID:10165!1.69e-09!1;DOID:1798!1.69e-09!1|ontology_enrichment_disease_v019=DOID:5409;1.80e-07;4|ontology_enrichment_disease_v019_2=DOID:5409,1.92e-07,4|ontology_enrichment_uberon=UBERON:0000966!2.36e-26!5;UBERON:0005388!2.36e-26!5;UBERON:0001802!2.36e-26!5;UBERON:0000476!3.03e-25!3;UBERON:0000920!3.03e-25!3;UBERON:0003124!9.16e-19!7;UBERON:0001905!8.35e-18!2;UBERON:0002757!8.35e-18!2;UBERON:0010134!8.35e-18!2;UBERON:0002784!8.35e-18!2;UBERON:0005408!8.35e-18!2;UBERON:0001899!8.35e-18!2;UBERON:0005631!2.72e-14!14;UBERON:0000158!2.72e-14!14;UBERON:0000970!3.20e-14!20;UBERON:0002104!1.60e-13!21;UBERON:0000020!2.64e-12!23;UBERON:0001032!9.00e-12!24;UBERON:0004456!9.00e-12!24;UBERON:0001781!1.10e-11!3;UBERON:0001782!1.10e-11!3;UBERON:0005424!1.10e-11!3;UBERON:0000019!1.52e-10!19;UBERON:0000047!1.52e-10!19;UBERON:0004088!1.52e-10!19;UBERON:0003072!1.52e-10!19;UBERON:0003071!1.52e-10!19;UBERON:0004128!1.52e-10!19;UBERON:0001456!1.60e-09!21;UBERON:0003296!2.35e-09!4;UBERON:0010133!2.35e-09!4;UBERON:0000478!2.89e-08!24;UBERON:0007625!4.42e-07!11;UBERON:0005085!7.74e-07!29|ontology_enrichment_uberon_v019=UBERON:0001905;1.29e-50;2!UBERON:0002757;1.29e-50;2!UBERON:0010134;1.29e-50;2!UBERON:0005408;1.29e-50;2!UBERON:0001899;1.29e-50;2!UBERON:0003124;1.27e-33;3!UBERON:0000920;1.27e-33;3!UBERON:0003296;6.32e-26;4!UBERON:0010133;6.32e-26;4!UBERON:0002784;6.32e-26;4!UBERON:0000966;9.93e-21;5!UBERON:0005388;9.93e-21;5!UBERON:0001802;9.93e-21;5!UBERON:0001894;2.75e-15;7!UBERON:0000970;7.54e-12;20!UBERON:0002104;2.56e-11;21!UBERON:0005631;7.67e-11;10!UBERON:0000158;7.67e-11;10!UBERON:0000020;2.16e-10;23!UBERON:0001032;5.48e-10;24!UBERON:0004456;5.48e-10;24|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.46e-50,2;UBERON:0002757,1.46e-50,2;UBERON:0010134,1.46e-50,2;UBERON:0005408,1.46e-50,2;UBERON:0001899,1.46e-50,2;UBERON:0000920,1.08e-33,3;UBERON:0003296,6.73e-26,4;UBERON:0010133,6.73e-26,4;UBERON:0002784,6.73e-26,4;UBERON:0000966,1.85e-17,6;UBERON:0005388,1.85e-17,6;UBERON:0001802,1.85e-17,6;UBERON:0001894,2.85e-15,7;UBERON:0006222,2.85e-15,7;UBERON:0003124,4.37e-15,7;UBERON:0000970,2.52e-11,21;UBERON:0002104,2.52e-11,21;UBERON:0000020,5.40e-10,24;UBERON:0001032,5.40e-10,24;UBERON:0004456,5.40e-10,24;UBERON:0005631,5.00e-08,14;UBERON:0000158,5.00e-08,14;UBERON:0003056,7.76e-07,61|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0.325378394664303,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658156191461918,0,0,0,0,0.23056390438806,0.269272933229316,0,2.23300811812344,0.274792780205587,2.66517388009317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.51961481561065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523813388962845,0,0,0,0,0,0,0,0,0,0,0,4.28561468702629,21.1858744997859,0,0,0.177404740325278,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,7.64799022690223,1.73814972905999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.08886981816315,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9922 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29112 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-38bp_to_ENST00000450726,uc003bxu.3_5end | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_24_at_IQSEC1_5end | |||
|id=chr3:13028574..13028588,- | |||
|ontology_enrichment_celltype=CL:0002541!3.03e-25!3;CL:0002586!1.10e-11!3;CL:0000149!5.51e-09!4 | |||
|ontology_enrichment_celltype_v019=CL:0002541;1.27e-33;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,1.08e-33,3 | |||
|ontology_enrichment_development_v019=UBERON:0003056;9.10e-34;3 | |||
|ontology_enrichment_disease=DOID:1799!1.69e-09!1;DOID:10165!1.69e-09!1;DOID:1798!1.69e-09!1 | |||
|ontology_enrichment_disease_v019=DOID:5409;1.80e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,1.92e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0000966!2.36e-26!5;UBERON:0005388!2.36e-26!5;UBERON:0001802!2.36e-26!5;UBERON:0000476!3.03e-25!3;UBERON:0000920!3.03e-25!3;UBERON:0003124!9.16e-19!7;UBERON:0001905!8.35e-18!2;UBERON:0002757!8.35e-18!2;UBERON:0010134!8.35e-18!2;UBERON:0002784!8.35e-18!2;UBERON:0005408!8.35e-18!2;UBERON:0001899!8.35e-18!2;UBERON:0005631!2.72e-14!14;UBERON:0000158!2.72e-14!14;UBERON:0000970!3.20e-14!20;UBERON:0002104!1.60e-13!21;UBERON:0000020!2.64e-12!23;UBERON:0001032!9.00e-12!24;UBERON:0004456!9.00e-12!24;UBERON:0001781!1.10e-11!3;UBERON:0001782!1.10e-11!3;UBERON:0005424!1.10e-11!3;UBERON:0000019!1.52e-10!19;UBERON:0000047!1.52e-10!19;UBERON:0004088!1.52e-10!19;UBERON:0003072!1.52e-10!19;UBERON:0003071!1.52e-10!19;UBERON:0004128!1.52e-10!19;UBERON:0001456!1.60e-09!21;UBERON:0003296!2.35e-09!4;UBERON:0010133!2.35e-09!4;UBERON:0000478!2.89e-08!24;UBERON:0007625!4.42e-07!11;UBERON:0005085!7.74e-07!29 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.29e-50;2!UBERON:0002757;1.29e-50;2!UBERON:0010134;1.29e-50;2!UBERON:0005408;1.29e-50;2!UBERON:0001899;1.29e-50;2!UBERON:0003124;1.27e-33;3!UBERON:0000920;1.27e-33;3!UBERON:0003296;6.32e-26;4!UBERON:0010133;6.32e-26;4!UBERON:0002784;6.32e-26;4!UBERON:0000966;9.93e-21;5!UBERON:0005388;9.93e-21;5!UBERON:0001802;9.93e-21;5!UBERON:0001894;2.75e-15;7!UBERON:0000970;7.54e-12;20!UBERON:0002104;2.56e-11;21!UBERON:0005631;7.67e-11;10!UBERON:0000158;7.67e-11;10!UBERON:0000020;2.16e-10;23!UBERON:0001032;5.48e-10;24!UBERON:0004456;5.48e-10;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.46e-50,2;UBERON:0002757,1.46e-50,2;UBERON:0010134,1.46e-50,2;UBERON:0005408,1.46e-50,2;UBERON:0001899,1.46e-50,2;UBERON:0000920,1.08e-33,3;UBERON:0003296,6.73e-26,4;UBERON:0010133,6.73e-26,4;UBERON:0002784,6.73e-26,4;UBERON:0000966,1.85e-17,6;UBERON:0005388,1.85e-17,6;UBERON:0001802,1.85e-17,6;UBERON:0001894,2.85e-15,7;UBERON:0006222,2.85e-15,7;UBERON:0003124,4.37e-15,7;UBERON:0000970,2.52e-11,21;UBERON:0002104,2.52e-11,21;UBERON:0000020,5.40e-10,24;UBERON:0001032,5.40e-10,24;UBERON:0004456,5.40e-10,24;UBERON:0005631,5.00e-08,14;UBERON:0000158,5.00e-08,14;UBERON:0003056,7.76e-07,61 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0.325378394664303,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658156191461918,0,0,0,0,0.23056390438806,0.269272933229316,0,2.23300811812344,0.274792780205587,2.66517388009317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.51961481561065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523813388962845,0,0,0,0,0,0,0,0,0,0,0,4.28561468702629,21.1858744997859,0,0,0.177404740325278,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,7.64799022690223,1.73814972905999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.08886981816315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p24@IQSEC1 | |||
}} |
Revision as of 21:31, 12 September 2013
Short description: | p24@IQSEC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_24_at_IQSEC1_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | -38bp_to_ENST00000450726, uc003bxu.3_5end |
EntrezGene: | IQSEC1 |
HGNC: | 29112 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 1.08e-33 | 3 |
Ontology term | p-value | n |
---|---|---|
pineal body | 1.46e-50 | 2 |
regional part of epithalamus | 1.46e-50 | 2 |
secretory circumventricular organ | 1.46e-50 | 2 |
circumventricular organ | 1.46e-50 | 2 |
epithalamus | 1.46e-50 | 2 |
egg chorion | 1.08e-33 | 3 |
gland of diencephalon | 6.73e-26 | 4 |
neuroendocrine gland | 6.73e-26 | 4 |
regional part of diencephalon | 6.73e-26 | 4 |
retina | 1.85e-17 | 6 |
photoreceptor array | 1.85e-17 | 6 |
posterior segment of eyeball | 1.85e-17 | 6 |
diencephalon | 2.85e-15 | 7 |
future diencephalon | 2.85e-15 | 7 |
chorion | 4.37e-15 | 7 |
eye | 2.52e-11 | 21 |
visual system | 2.52e-11 | 21 |
sense organ | 5.40e-10 | 24 |
sensory system | 5.40e-10 | 24 |
entire sense organ system | 5.40e-10 | 24 |
extraembryonic membrane | 5.00e-08 | 14 |
membranous layer | 5.00e-08 | 14 |
pre-chordal neural plate | 7.76e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 1.92e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.