FFCP PHASE1:Hg19::chr6:152506604..152506618,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23345|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17089|TSSclassifier=S|UniProt=|association_with_transcript=-58bp_to_ENST00000536990_5end|coexpression_cluster_id=C18|description=CAGE_peak_15_at_SYNE1_5end|id=chr6:152506604..152506618,-|ontology_enrichment_celltype=CL:0000838!9.89e-36!52;CL:0000542!7.58e-35!53;CL:0000051!7.58e-35!53;CL:0000791!1.76e-31!18;CL:0000789!1.76e-31!18;CL:0002420!1.76e-31!18;CL:0002419!1.76e-31!18;CL:0000790!1.76e-31!18;CL:0000625!2.99e-22!11;CL:0002087!1.24e-21!119;CL:0000084!4.10e-21!25;CL:0000827!4.10e-21!25;CL:0000236!8.22e-20!14;CL:0000738!1.90e-19!140;CL:0002031!9.53e-17!124;CL:0000037!2.48e-13!172;CL:0000566!2.48e-13!172;CL:0000624!5.02e-13!6;CL:0000988!6.82e-12!182;CL:0002032!7.08e-12!165;CL:0000837!7.08e-12!165;CL:0000945!7.83e-12!24;CL:0000826!7.83e-12!24;CL:0000898!1.66e-07!3;CL:0000842!7.80e-07!3|ontology_enrichment_celltype_v019=CL:0000791;5.32e-54;18!CL:0000789;5.32e-54;18!CL:0002419;5.32e-54;18!CL:0000084;1.33e-37;25!CL:0000625;1.71e-37;11!CL:0000542;5.54e-22;53!CL:0000624;1.82e-21;6!CL:0000898;6.71e-12;3!CL:0000226;9.91e-11;3!CL:0000842;9.91e-11;3!CL:0000623;1.61e-10;3!CL:0000236;9.48e-09;13!CL:0000815;1.74e-08;2!CL:0000792;1.74e-08;2!CL:0002677;1.74e-08;2!CL:0002087;2.15e-07;104|ontology_enrichment_celltype_v019_2=CL:0000791,3.72e-54,18;CL:0000789,3.72e-54,18;CL:0002420,3.72e-54,18;CL:0002419,3.72e-54,18;CL:0000790,3.72e-54,18;CL:0000838,6.09e-39,52;CL:0000542,4.49e-38,53;CL:0000051,4.49e-38,53;CL:0000084,1.03e-37,25;CL:0000827,1.03e-37,25;CL:0000625,1.27e-37,11;CL:0000624,1.67e-21,6;CL:0002087,2.61e-19,115;CL:0000738,1.97e-16,136;CL:0002031,4.25e-14,120;CL:0000898,6.60e-12,3;CL:0000037,7.12e-12,168;CL:0000988,6.75e-11,177;CL:0000226,9.60e-11,3;CL:0000842,9.60e-11,3;CL:0000623,1.54e-10,3;CL:0000825,1.54e-10,3;CL:0002032,9.68e-10,161;CL:0000837,9.68e-10,161;CL:0000815,1.71e-08,2;CL:0000792,1.71e-08,2;CL:0002677,1.71e-08,2;CL:0000236,5.17e-08,14|ontology_enrichment_development_v019=CL:0000790;5.32e-54;18!CL:0000051;5.54e-22;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000178!4.00e-14!15;UBERON:0000179!4.00e-14!15;UBERON:0000463!4.00e-14!15;UBERON:0007023!7.74e-10!115|ontology_enrichment_uberon_v019=UBERON:0000178;1.82e-24;15!UBERON:0000179;1.82e-24;15!UBERON:0000463;1.82e-24;15!UBERON:0002390;4.31e-10;32!UBERON:0002193;1.88e-08;42|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.74e-24,15;UBERON:0000179,1.74e-24,15;UBERON:0000463,1.74e-24,15|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.91914699048606,0.154816123316076,0,0,0,0.309868802321207,0,0,0,0.401088894940283,0.868043482863407,0.223915474239924,2.26725566213286,0.77272670290256,0,0,0,0.232429036905685,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18455444504853,3.55803701545422,0.426730222566507,1.20118796110804,4.02326707968138,5.2883589822789,0.954053754535364,0.569212969109448,1.17447437874188,0.764546456250458,0,0,0,9.44206896546399,2.75107533924415,4.31763147898969,2.00623794468814,12.0591238654428,16.5706732007157,3.89653456815823,2.1167986808183,5.59751224202191,2.87994062958707,6.22848886659536,1.66518715643378,1.1705341280389,3.28875809207352,5.25065033793112,1.15921234294021,7.8591878475892,6.42097987415311,1.04535523804977,2.83273356743915,8.43085085924227,8.24705869158312,8.8556892206826,11.1497895013434,5.85975108470777,10.4549724889321,4.81840381048873,6.2713439465665,11.2437653897111,9.94464458584871,6.56902397536837,3.83052812126992,1.87208137048455,2.46201486600758,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0.649094787309367,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.94061520403854,1.72502059887614,2.18183161675572,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.10152039184331,2.5885704098234,2.77491650288955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,1.52234282769651,1.52927441428475,2.27858874869665,3.09701308095126,2.87953591160336,2.59389324477087,2.70015718619057,3.17250070517708,0,0,0,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,3.59169090190492,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353830258013357,0.611030144933625,0,0,0,0,0,0,0.182454789215666,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427149650270779,0,0,1.9846640872478,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0.460935950223117,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308696632431779,0.218559560503957,0,0,0,0,0,0,0,0.375935671919414,0.128915775947154,0,0,0,0,0,0.458729283404541,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,0,0.581300188524055,0.496597714366863,0,0,0,0.217716747896961,0,2.76143417359809,0.143444410785353,0,0,0,0,0,0,0.122241444182866,0,0.665756774185513,1.40891655513718,0|short_description=p15@SYNE1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=23345 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17089 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-58bp_to_ENST00000536990_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_15_at_SYNE1_5end | |||
|id=chr6:152506604..152506618,- | |||
|ontology_enrichment_celltype=CL:0000838!9.89e-36!52;CL:0000542!7.58e-35!53;CL:0000051!7.58e-35!53;CL:0000791!1.76e-31!18;CL:0000789!1.76e-31!18;CL:0002420!1.76e-31!18;CL:0002419!1.76e-31!18;CL:0000790!1.76e-31!18;CL:0000625!2.99e-22!11;CL:0002087!1.24e-21!119;CL:0000084!4.10e-21!25;CL:0000827!4.10e-21!25;CL:0000236!8.22e-20!14;CL:0000738!1.90e-19!140;CL:0002031!9.53e-17!124;CL:0000037!2.48e-13!172;CL:0000566!2.48e-13!172;CL:0000624!5.02e-13!6;CL:0000988!6.82e-12!182;CL:0002032!7.08e-12!165;CL:0000837!7.08e-12!165;CL:0000945!7.83e-12!24;CL:0000826!7.83e-12!24;CL:0000898!1.66e-07!3;CL:0000842!7.80e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000791;5.32e-54;18!CL:0000789;5.32e-54;18!CL:0002419;5.32e-54;18!CL:0000084;1.33e-37;25!CL:0000625;1.71e-37;11!CL:0000542;5.54e-22;53!CL:0000624;1.82e-21;6!CL:0000898;6.71e-12;3!CL:0000226;9.91e-11;3!CL:0000842;9.91e-11;3!CL:0000623;1.61e-10;3!CL:0000236;9.48e-09;13!CL:0000815;1.74e-08;2!CL:0000792;1.74e-08;2!CL:0002677;1.74e-08;2!CL:0002087;2.15e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.72e-54,18;CL:0000789,3.72e-54,18;CL:0002420,3.72e-54,18;CL:0002419,3.72e-54,18;CL:0000790,3.72e-54,18;CL:0000838,6.09e-39,52;CL:0000542,4.49e-38,53;CL:0000051,4.49e-38,53;CL:0000084,1.03e-37,25;CL:0000827,1.03e-37,25;CL:0000625,1.27e-37,11;CL:0000624,1.67e-21,6;CL:0002087,2.61e-19,115;CL:0000738,1.97e-16,136;CL:0002031,4.25e-14,120;CL:0000898,6.60e-12,3;CL:0000037,7.12e-12,168;CL:0000988,6.75e-11,177;CL:0000226,9.60e-11,3;CL:0000842,9.60e-11,3;CL:0000623,1.54e-10,3;CL:0000825,1.54e-10,3;CL:0002032,9.68e-10,161;CL:0000837,9.68e-10,161;CL:0000815,1.71e-08,2;CL:0000792,1.71e-08,2;CL:0002677,1.71e-08,2;CL:0000236,5.17e-08,14 | |||
|ontology_enrichment_development_v019=CL:0000790;5.32e-54;18!CL:0000051;5.54e-22;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!4.00e-14!15;UBERON:0000179!4.00e-14!15;UBERON:0000463!4.00e-14!15;UBERON:0007023!7.74e-10!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.82e-24;15!UBERON:0000179;1.82e-24;15!UBERON:0000463;1.82e-24;15!UBERON:0002390;4.31e-10;32!UBERON:0002193;1.88e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.74e-24,15;UBERON:0000179,1.74e-24,15;UBERON:0000463,1.74e-24,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.91914699048606,0.154816123316076,0,0,0,0.309868802321207,0,0,0,0.401088894940283,0.868043482863407,0.223915474239924,2.26725566213286,0.77272670290256,0,0,0,0.232429036905685,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18455444504853,3.55803701545422,0.426730222566507,1.20118796110804,4.02326707968138,5.2883589822789,0.954053754535364,0.569212969109448,1.17447437874188,0.764546456250458,0,0,0,9.44206896546399,2.75107533924415,4.31763147898969,2.00623794468814,12.0591238654428,16.5706732007157,3.89653456815823,2.1167986808183,5.59751224202191,2.87994062958707,6.22848886659536,1.66518715643378,1.1705341280389,3.28875809207352,5.25065033793112,1.15921234294021,7.8591878475892,6.42097987415311,1.04535523804977,2.83273356743915,8.43085085924227,8.24705869158312,8.8556892206826,11.1497895013434,5.85975108470777,10.4549724889321,4.81840381048873,6.2713439465665,11.2437653897111,9.94464458584871,6.56902397536837,3.83052812126992,1.87208137048455,2.46201486600758,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0.649094787309367,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.94061520403854,1.72502059887614,2.18183161675572,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.10152039184331,2.5885704098234,2.77491650288955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,1.52234282769651,1.52927441428475,2.27858874869665,3.09701308095126,2.87953591160336,2.59389324477087,2.70015718619057,3.17250070517708,0,0,0,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,3.59169090190492,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353830258013357,0.611030144933625,0,0,0,0,0,0,0.182454789215666,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427149650270779,0,0,1.9846640872478,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0.460935950223117,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308696632431779,0.218559560503957,0,0,0,0,0,0,0,0.375935671919414,0.128915775947154,0,0,0,0,0,0.458729283404541,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,0,0.581300188524055,0.496597714366863,0,0,0,0.217716747896961,0,2.76143417359809,0.143444410785353,0,0,0,0,0,0,0.122241444182866,0,0.665756774185513,1.40891655513718,0 | |||
|short_description=p15@SYNE1 | |||
}} |
Revision as of 18:48, 13 September 2013
Short description: | p15@SYNE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_15_at_SYNE1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -58bp_to_ENST00000536990_5end |
EntrezGene: | SYNE1 |
HGNC: | 17089 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.72e-54 | 18 |
alpha-beta T cell | 3.72e-54 | 18 |
immature T cell | 3.72e-54 | 18 |
mature T cell | 3.72e-54 | 18 |
immature alpha-beta T cell | 3.72e-54 | 18 |
lymphoid lineage restricted progenitor cell | 6.09e-39 | 52 |
lymphocyte | 4.49e-38 | 53 |
common lymphoid progenitor | 4.49e-38 | 53 |
T cell | 1.03e-37 | 25 |
pro-T cell | 1.03e-37 | 25 |
CD8-positive, alpha-beta T cell | 1.27e-37 | 11 |
CD4-positive, alpha-beta T cell | 1.67e-21 | 6 |
nongranular leukocyte | 2.61e-19 | 115 |
leukocyte | 1.97e-16 | 136 |
hematopoietic lineage restricted progenitor cell | 4.25e-14 | 120 |
naive T cell | 6.60e-12 | 3 |
hematopoietic stem cell | 7.12e-12 | 168 |
hematopoietic cell | 6.75e-11 | 177 |
single nucleate cell | 9.60e-11 | 3 |
mononuclear cell | 9.60e-11 | 3 |
natural killer cell | 1.54e-10 | 3 |
pro-NK cell | 1.54e-10 | 3 |
hematopoietic oligopotent progenitor cell | 9.68e-10 | 161 |
hematopoietic multipotent progenitor cell | 9.68e-10 | 161 |
regulatory T cell | 1.71e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.71e-08 | 2 |
naive regulatory T cell | 1.71e-08 | 2 |
B cell | 5.17e-08 | 14 |
Ontology term | p-value | n |
---|---|---|
blood | 1.74e-24 | 15 |
haemolymphatic fluid | 1.74e-24 | 15 |
organism substance | 1.74e-24 | 15 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.