FFCP PHASE1:Hg19::chrX:134975858..134975877,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55511|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30369|TSSclassifier=S|UniProt=|association_with_transcript=4bp_to_uc010nry.1_5end|coexpression_cluster_id=C4852|description=CAGE_peak_1_at_SAGE1_5end|id=chrX:134975858..134975877,+|ontology_enrichment_celltype=CL:0000054!2.14e-09!2;CL:0000137!2.14e-09!2;CL:0000092!2.14e-09!2|ontology_enrichment_celltype_v019=CL:0000319;4.32e-09;1|ontology_enrichment_celltype_v019_2=CL:0000319,5.28e-09,1|ontology_enrichment_development_v019=UBERON:0005425;4.32e-09;1|ontology_enrichment_disease=DOID:1036!6.28e-14!8;DOID:4468!1.23e-09!2;DOID:200!2.14e-09!2;DOID:4305!2.14e-09!2|ontology_enrichment_disease_v019=DOID:1036;1.17e-25;8!DOID:0060085;1.91e-09;1!DOID:3165;1.91e-09;1!DOID:0060121;1.91e-09;1!DOID:2438;1.91e-09;1!DOID:4418;1.91e-09;1!DOID:8692;2.48e-09;31!DOID:3030;4.32e-09;1|ontology_enrichment_disease_v019_2=DOID:1036,1.14e-25,8;DOID:0060085,1.99e-09,1;DOID:3165,1.99e-09,1;DOID:0060121,1.99e-09,1;DOID:2438,1.99e-09,1;DOID:4418,1.99e-09,1;DOID:8692,4.86e-09,31;DOID:3030,5.28e-09,1;DOID:162,5.39e-09,235;DOID:14566,9.78e-09,239;DOID:1240,4.44e-07,39;DOID:2531,4.60e-07,51;DOID:0060083,4.60e-07,51|ontology_enrichment_uberon=UBERON:0000988!1.82e-12!3;UBERON:0006331!2.05e-12!3;UBERON:0002298!4.04e-12!8;UBERON:0002148!6.82e-09!2;UBERON:0009662!6.82e-09!2;UBERON:0004732!1.68e-07!13;UBERON:0002308!4.00e-07!9;UBERON:0000125!4.00e-07!9|ontology_enrichment_uberon_v019=UBERON:0000941;4.32e-09;1!UBERON:0001785;4.32e-09;1!UBERON:0002464;4.32e-09;1!UBERON:0004904;4.32e-09;1!UBERON:0001021;4.32e-09;1|ontology_enrichment_uberon_v019_2=UBERON:0000941,3.83e-09,1;UBERON:0001785,3.83e-09,1;UBERON:0002464,3.83e-09,1;UBERON:0004904,3.83e-09,1;UBERON:0001021,3.83e-09,1;UBERON:0003902,3.83e-09,1;UBERON:0005425,3.83e-09,1|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35426486594342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.821127996921047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366277859273374,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.6557641036396,0,0,0,0,0,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,1.67043704337145,0,0,0,0,0,0,39.6848906120909,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,15.8379746784517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27.522670595296,27.0566297358481,28.6974913728691,9.86719410165762,0,12.8708819362096,0.979396848954886,0,0,0,0,0,0,0,0,0,0,0,0,24.8494066043754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.83717389010903,6.35886757449567,0,0,5.93175269861349,0,0.599428828746391,0,49.8234193321733,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0.399358000997982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.89577174294447,0,3.17273856256352,0,0,0.129282956361551,0.66116300871345,0.855434189421647,0,0,0,0,0,7.70685364401983,0,0,0,0,0,0,0,0,0,0,0,0,0.18628920882415,0,0.249960815924213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2288645437686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36329340684902,0,0,0,0,0,0,0,0,1.43670473151436,0,0,0,0.645902582527404,1.42769420259154,0,0,0,0,0.381382095467167,0,0,0,3.0255760305528,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203909198930495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.799529247399431,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06090177505535,1.33982065078089,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p1@SAGE1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=55511 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30369 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=4bp_to_uc010nry.1_5end | |||
|coexpression_cluster_id=C4852 | |||
|description=CAGE_peak_1_at_SAGE1_5end | |||
|id=chrX:134975858..134975877,+ | |||
|ontology_enrichment_celltype=CL:0000054!2.14e-09!2;CL:0000137!2.14e-09!2;CL:0000092!2.14e-09!2 | |||
|ontology_enrichment_celltype_v019=CL:0000319;4.32e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000319,5.28e-09,1 | |||
|ontology_enrichment_development_v019=UBERON:0005425;4.32e-09;1 | |||
|ontology_enrichment_disease=DOID:1036!6.28e-14!8;DOID:4468!1.23e-09!2;DOID:200!2.14e-09!2;DOID:4305!2.14e-09!2 | |||
|ontology_enrichment_disease_v019=DOID:1036;1.17e-25;8!DOID:0060085;1.91e-09;1!DOID:3165;1.91e-09;1!DOID:0060121;1.91e-09;1!DOID:2438;1.91e-09;1!DOID:4418;1.91e-09;1!DOID:8692;2.48e-09;31!DOID:3030;4.32e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,1.14e-25,8;DOID:0060085,1.99e-09,1;DOID:3165,1.99e-09,1;DOID:0060121,1.99e-09,1;DOID:2438,1.99e-09,1;DOID:4418,1.99e-09,1;DOID:8692,4.86e-09,31;DOID:3030,5.28e-09,1;DOID:162,5.39e-09,235;DOID:14566,9.78e-09,239;DOID:1240,4.44e-07,39;DOID:2531,4.60e-07,51;DOID:0060083,4.60e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0000988!1.82e-12!3;UBERON:0006331!2.05e-12!3;UBERON:0002298!4.04e-12!8;UBERON:0002148!6.82e-09!2;UBERON:0009662!6.82e-09!2;UBERON:0004732!1.68e-07!13;UBERON:0002308!4.00e-07!9;UBERON:0000125!4.00e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;4.32e-09;1!UBERON:0001785;4.32e-09;1!UBERON:0002464;4.32e-09;1!UBERON:0004904;4.32e-09;1!UBERON:0001021;4.32e-09;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,3.83e-09,1;UBERON:0001785,3.83e-09,1;UBERON:0002464,3.83e-09,1;UBERON:0004904,3.83e-09,1;UBERON:0001021,3.83e-09,1;UBERON:0003902,3.83e-09,1;UBERON:0005425,3.83e-09,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35426486594342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.821127996921047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366277859273374,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.6557641036396,0,0,0,0,0,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,1.67043704337145,0,0,0,0,0,0,39.6848906120909,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,15.8379746784517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27.522670595296,27.0566297358481,28.6974913728691,9.86719410165762,0,12.8708819362096,0.979396848954886,0,0,0,0,0,0,0,0,0,0,0,0,24.8494066043754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.83717389010903,6.35886757449567,0,0,5.93175269861349,0,0.599428828746391,0,49.8234193321733,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0.399358000997982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.89577174294447,0,3.17273856256352,0,0,0.129282956361551,0.66116300871345,0.855434189421647,0,0,0,0,0,7.70685364401983,0,0,0,0,0,0,0,0,0,0,0,0,0.18628920882415,0,0.249960815924213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2288645437686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36329340684902,0,0,0,0,0,0,0,0,1.43670473151436,0,0,0,0.645902582527404,1.42769420259154,0,0,0,0,0.381382095467167,0,0,0,3.0255760305528,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203909198930495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.799529247399431,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06090177505535,1.33982065078089,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@SAGE1 | |||
}} |
Revision as of 10:50, 14 September 2013
Short description: | p1@SAGE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_SAGE1_5end |
Coexpression cluster: | C4852_gastric_ductal_adrenal_chronic_clear_bronchogenic_fibrosarcoma |
Association with transcript: | 4bp_to_uc010nry.1_5end |
EntrezGene: | SAGE1 |
HGNC: | 30369 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mucus secreting cell | 5.28e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 3.83e-09 | 1 |
cranial nerve | 3.83e-09 | 1 |
nerve trunk | 3.83e-09 | 1 |
nerve connecting eye with brain | 3.83e-09 | 1 |
nerve | 3.83e-09 | 1 |
retinal neural layer | 3.83e-09 | 1 |
presumptive neural retina | 3.83e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 1.14e-25 | 8 |
organ system benign neoplasm | 1.99e-09 | 1 |
skin benign neoplasm | 1.99e-09 | 1 |
integumentary system benign neoplasm | 1.99e-09 | 1 |
dermis tumor | 1.99e-09 | 1 |
cutaneous fibrous histiocytoma | 1.99e-09 | 1 |
myeloid leukemia | 4.86e-09 | 31 |
mucinous adenocarcinoma | 5.28e-09 | 1 |
cancer | 5.39e-09 | 235 |
disease of cellular proliferation | 9.78e-09 | 239 |
leukemia | 4.44e-07 | 39 |
hematologic cancer | 4.60e-07 | 51 |
immune system cancer | 4.60e-07 | 51 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.