FFCP PHASE1:Hg19::chr11:129246037..129246073,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=108bp_to_AB527829_5end | |||
|description=CAGE_peak_1_at_AB527829_5end | |||
|id=chr11:129246037..129246073,+ | |||
|ontology_enrichment_celltype=CL:0002076!3.60e-13!43;CL:0000223!6.98e-10!59;CL:0002368!1.55e-07!13;CL:0002251!5.67e-07!21 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,3.40e-09,42;CL:0000223,9.83e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1749;8.37e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,6.12e-08,106;DOID:1749,7.36e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.13e-20!115;UBERON:0004119!2.11e-15!169;UBERON:0000925!2.11e-15!169;UBERON:0006595!2.11e-15!169;UBERON:0001007!6.38e-13!155;UBERON:0001555!6.38e-13!155;UBERON:0007026!6.38e-13!155;UBERON:0001049!2.03e-11!57;UBERON:0005068!2.03e-11!57;UBERON:0006241!2.03e-11!57;UBERON:0007135!2.03e-11!57;UBERON:0004921!3.59e-11!129;UBERON:0004185!3.59e-11!129;UBERON:0001004!6.84e-10!72;UBERON:0000481!1.96e-09!347;UBERON:0002298!2.47e-09!8;UBERON:0005409!2.04e-08!35;UBERON:0000153!2.75e-08!129;UBERON:0007811!2.75e-08!129;UBERON:0000077!3.02e-08!130;UBERON:0002616!4.00e-08!59;UBERON:0000922!5.45e-08!612;UBERON:0002346!9.19e-08!90;UBERON:0000062!1.22e-07!511;UBERON:0000033!1.23e-07!123;UBERON:0000475!1.46e-07!365;UBERON:0005181!1.94e-07!35;UBERON:0002294!2.68e-07!7;UBERON:0001173!2.68e-07!7;UBERON:0004912!2.68e-07!7;UBERON:0000468!3.31e-07!659;UBERON:0003075!3.65e-07!86;UBERON:0007284!3.65e-07!86;UBERON:0000160!4.48e-07!27;UBERON:0001041!5.58e-07!98;UBERON:0002050!6.12e-07!605;UBERON:0005423!6.12e-07!605;UBERON:0005178!7.32e-07!34;UBERON:0002224!7.32e-07!34;UBERON:0003080!8.32e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;7.97e-16;33!UBERON:0005409;2.68e-11;22!UBERON:0001041;5.94e-10;14!UBERON:0001555;6.87e-09;54!UBERON:0001896;1.88e-08;3!UBERON:0005290;1.88e-08;3!UBERON:0000160;4.90e-08;17!UBERON:0002298;4.74e-07;6!UBERON:0005178;6.53e-07;34!UBERON:0002224;6.53e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,3.66e-12,145;UBERON:0001555,3.66e-12,145;UBERON:0007026,3.66e-12,145;UBERON:0004119,9.35e-12,160;UBERON:0000925,9.35e-12,160;UBERON:0006595,9.35e-12,160;UBERON:0004921,1.78e-11,118;UBERON:0005409,6.83e-10,25;UBERON:0001896,1.35e-08,3;UBERON:0005290,1.35e-08,3;UBERON:0010096,1.35e-08,3;UBERON:0007023,2.68e-08,114;UBERON:0011216,3.86e-08,223;UBERON:0000160,4.01e-08,17;UBERON:0005178,1.31e-07,34;UBERON:0002224,1.31e-07,34;UBERON:0005181,2.55e-07,35;UBERON:0002298,3.29e-07,6;UBERON:0001041,6.48e-07,87;UBERON:0001004,6.85e-07,74;UBERON:0000915,8.23e-07,52 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,2.58827807116751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,2.5500670180478,2.59549109949101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18047026071267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0.272746120590835,0.286804595389004,0,0,0,0.10366105501537,0.756962552626885,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0.439001141634502,0,0.100528972411631,2.59247646443883,0,0,0,0,0,0,0,0,0,1.71697232418975,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.828728900423067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0.831076008928724,0,0,0,0,0,0,0.515205058238611,0,0,0,0.650060246036521,0,0.193341436584244,0,0,0,0,0,0,0.0890320356467374,0.661139661443912,0.192190067365106,0.255225424989168,1.0115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.865999014529609,1.34060455107157,2.17781969722645,0.188287601553558,0.43050537267123,1.68471475667626,0.886860307073351,0,0,0,0,0,0,0,0,0,0,0,1.47024129588619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19548792950642,2.21027132424918,0,0,0,0,0.449341755736634,0.179021174675609,0,0,0,0,0,0,1.99613798001194,2.86470537193757,0,1.44999915086959,0.910347586283997,3.55955110409873,5.2005289988946,0,0,0,7.08593108651071,0.844175070377856,0,0,0.886642856860642,0.219385397153973,0,1.53366118706464,0.153900517007594,0.113942055847001,0,0.179515288819544,0.869178975376065,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98578579323551,1.85760885457012,6.11030144933625,4.44781693020933,1.85345908419754,2.29728288912002,2.02203398942031,0.802577647298789,0.468528891450678,0,0.391329237864179,3.15614493394321,0,2.41981432097328,0.30607276163049,0,0.150323419414493,1.03688191397247,0,0,0.313932918407225,0,0,5.40831224751241,0,2.74378712760257,0,1.57254001417827,0,0,0,0,2.13375836274523,0,2.03382666702479,0,0,0.126621591911757,5.86654148204409,0.721429382263803,1.92107695265417,6.19409789704604,1.87317542300338,0,0,0.576219191952599,0,1.17847017308398,0,0,0,0,0,0.136905378891993,0,0,0.262887354279314,0.279282401272254,0,0,3.59422200898184,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.272406812223151,0,0,0,0,0.77380195455795,0,0,0.788057072991982,0.314727528809989,1.16160370171347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.71494208359256,0.13223260174269,0,2.81926008926669,0.640724475406168,0.943225830597996,0.828478110694391,0,0,0,2.55336503108073,0,0,0,0,0.157054096250234,0,0,0.1251909307065,8.60113793535107,4.21530395840039,1.98708489412427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.79982354196902,0,0,0,0,0.839277046316667,1.24415452006595,0,0,0,0,0,5.73952284274544,0.743614585554013,0,0,0.23658523500376,0,0,0,0.256916900385838,0,0.159633859057151,0.82046545696302,0,0.138314504928436,0.322951291263702,0,2.55184068102667,0,2.20114318226015,0,0,2.0710797781803,0,0.82731361184183,0,2.34454203369928,0,0.163771917510097,0.887136517302272,0.0675375846183947,0,0,0.0634158101939068,0,1.64477330057155,1.48863353516788,0,1.78867398695433,0,0,0,0,0.266107110487916,0,0,0.543757863814654,0.0657727735628491,0.236387681767936,0,0.863424021355654,0,8.12789273609988,0.913158720509496,6.0459725541214,17.1990607639338,0,0,0,0.173858272302579,0,1.03608082081518,0,0,0.860454717640555,0,0,0,1.3746412112643,0.31020638566432,0,0,0.490751168076215,2.56027642462766,0.647428837187895,0,0,1.45713297917742,0,0,0,0,0,1.81155412280008,5.55653938377201,4.37119121007915,0,0,0,1.57046773691956,1.78227840196252,0.4226557275834,0,0,0,0,2.67830907908486,5.29342307573538,0,2.92134555298607,4.12856355064087,0.716697915757256,0.788857810965923,0.0679914901909147,0,3.7031878836078,0,0,0,0,0,0,0,0,0.18378979906969,0,0.303114792872958,0.267964130156178,2.48750831837634,0.310298987585686,2.13233981900981,0.714193294391221,0,0.0620747142958579,0,0,0,2.61260097476354,4.44903291410865,1.34704106029175,2.22338836717297,2.32862249582209,1.05824249194267,0,0,0,2.34640942403454,0,1.22068853494722,0,0.201273793591026,0 | |||
|short_description=p1@AB527829 | |||
}} |
Revision as of 11:13, 11 January 2014
Short description: | p1@AB527829 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_AB527829_5end |
Coexpression cluster: | NA |
Association with transcript: | 108bp_to_AB527829_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 3.40e-09 | 42 |
endodermal cell | 9.83e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
digestive system | 3.66e-12 | 145 |
digestive tract | 3.66e-12 | 145 |
primitive gut | 3.66e-12 | 145 |
endoderm-derived structure | 9.35e-12 | 160 |
endoderm | 9.35e-12 | 160 |
presumptive endoderm | 9.35e-12 | 160 |
subdivision of digestive tract | 1.78e-11 | 118 |
gastrointestinal system | 6.83e-10 | 25 |
medulla oblongata | 1.35e-08 | 3 |
myelencephalon | 1.35e-08 | 3 |
future myelencephalon | 1.35e-08 | 3 |
adult organism | 2.68e-08 | 114 |
organ system subdivision | 3.86e-08 | 223 |
intestine | 4.01e-08 | 17 |
thoracic cavity element | 1.31e-07 | 34 |
thoracic cavity | 1.31e-07 | 34 |
thoracic segment organ | 2.55e-07 | 35 |
brainstem | 3.29e-07 | 6 |
foregut | 6.48e-07 | 87 |
respiratory system | 6.85e-07 | 74 |
thoracic segment of trunk | 8.23e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.12e-08 | 106 |
squamous cell carcinoma | 7.36e-08 | 14 |