FFCP PHASE1:Hg19::chr12:322821..322873,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6539 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11045 | |||
|TSSclassifier=strong | |||
|UniProt=P48065 | |||
|association_with_transcript=0bp_to_ENST00000359674,NM_001122847,uc001qia.2_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_5_at_SLC6A12_5end | |||
|id=chr12:322821..322873,- | |||
|ontology_enrichment_celltype=CL:0000990!7.67e-15!8;CL:0000451!8.05e-12!10;CL:0000453!4.13e-11!5;CL:0000840!2.83e-09!5;CL:0001029!2.83e-09!5 | |||
|ontology_enrichment_celltype_v019=CL:0002575;8.64e-16;2!CL:0000990;8.61e-13;8!CL:0000235;2.30e-11;6!CL:0000840;4.50e-11;5!CL:0000451;1.70e-10;10!CL:0000669;2.46e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002575,8.66e-16,2;CL:0000990,7.27e-13,8;CL:0000235,2.57e-11,6;CL:0000840,3.78e-11,5;CL:0001029,3.78e-11,5;CL:0000451,1.48e-10,10;CL:0000669,2.47e-08,4 | |||
|ontology_enrichment_development_v019=UBERON:0005425;2.46e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.33e-34!115;UBERON:0001049!4.28e-28!57;UBERON:0005068!4.28e-28!57;UBERON:0006241!4.28e-28!57;UBERON:0007135!4.28e-28!57;UBERON:0002616!2.76e-23!59;UBERON:0002780!5.49e-23!41;UBERON:0001890!5.49e-23!41;UBERON:0006240!5.49e-23!41;UBERON:0003080!2.80e-22!42;UBERON:0001017!3.38e-20!82;UBERON:0005743!3.71e-20!86;UBERON:0001893!7.20e-20!34;UBERON:0000955!1.31e-19!69;UBERON:0006238!1.31e-19!69;UBERON:0003075!2.92e-19!86;UBERON:0007284!2.92e-19!86;UBERON:0000073!1.14e-18!94;UBERON:0001016!1.14e-18!94;UBERON:0002791!1.59e-18!33;UBERON:0002346!5.76e-18!90;UBERON:0002020!8.05e-18!34;UBERON:0003528!8.05e-18!34;UBERON:0001869!3.43e-17!32;UBERON:0003056!1.43e-14!61;UBERON:0002619!5.16e-14!22;UBERON:0001950!1.61e-13!20;UBERON:0000956!5.65e-12!25;UBERON:0000203!5.65e-12!25;UBERON:0000153!3.05e-10!129;UBERON:0007811!3.05e-10!129;UBERON:0000033!1.14e-09!123;UBERON:0000200!1.31e-08!6;UBERON:0002420!1.44e-07!9;UBERON:0007245!1.44e-07!9;UBERON:0010009!1.44e-07!9;UBERON:0010011!1.44e-07!9;UBERON:0000454!1.44e-07!9;UBERON:0002308!1.52e-07!9;UBERON:0000125!1.52e-07!9;UBERON:0000025!2.86e-07!194;UBERON:0009663!4.53e-07!7;UBERON:0003076!4.84e-07!15;UBERON:0003057!4.84e-07!15;UBERON:0001872!5.65e-07!5;UBERON:0002771!5.74e-07!3;UBERON:0004121!7.55e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;2.46e-08;1!UBERON:0001785;2.46e-08;1!UBERON:0002464;2.46e-08;1!UBERON:0004904;2.46e-08;1!UBERON:0001021;2.46e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,1.98e-08,1;UBERON:0001785,1.98e-08,1;UBERON:0002464,1.98e-08,1;UBERON:0004904,1.98e-08,1;UBERON:0001021,1.98e-08,1;UBERON:0003902,1.98e-08,1;UBERON:0005425,1.98e-08,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0.0821005894499457,0.0787107813136792,0,0.383829398097213,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0.605399502633369,0,0,0.211255286311942,1.06302149982522,0,0,0,0.16072558669708,0,0.19891667719909,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.654895377488563,0,0,0.97364218096405,1.39303789839414,1.46253756570752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.0132552232746,9.82827216677626,19.4960669204863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738651018262192,3.04205544681009,1.18904929830983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,2.10833939483032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.9832291840805,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.30762546418029,6.86286847621712,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.10982980369284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.09636686680301,0,0,0,0,1.01489521846434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,0,0,0,0,0,0,0,0.562677665642051,0,0,0.422250816255987,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0.552896299656123,0,0.658156191461918,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,1.32686346755009,0,0,0,0,0.539209063845416,0,0.234264445725339,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,1.42304773014896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.696418755514666,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0.684526894459965,0,0,0,0,0,0,0,0,0,0,0,0,0.157566364614447,0.164831716762333,0.0674035438541849,0,0,0,0.272406812223151,0,0,0,1.349843349309,0.77380195455795,0.607495566580247,0,2.99461687736953,1.62609223218494,0,0,0,0,0,0,0,0,0,0,0,0,0,9.08623848804111,0,0,0.52893040697076,0,0,0,0,0.828478110694391,0,0,0,0,0,0,0,0,0,0,0.366078794705889,0.876336514945499,0,0.443716206147409,0.807253238237985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10606748921385,0.779441235357554,3.98594520940089,0.817826971279221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.834979926253974,0,0,0.205116364240755,0,0.760729777106397,0.968853873791107,1.42769420259154,0,0,0,0,0,0,0,0.0752103283492573,0.20170506870352,0,0,0,0,0.472763092328763,1.56215619722769,0.413373593002368,0.570742291745161,0,0,0,0,0,0.535701835878287,0.336283722218824,0,0,0.266107110487916,0,0,0.40781839786099,0.789273282754189,0,0,0,0.628462359664008,0,0,0,0,0.428859265059938,0,0,0,0,0,0,0,0,0,0,0,1.14553434272025,0,0,0.335566295393377,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,1.62065732026684,0,0,0,0,0.196308467114945,0,0.4226557275834,0,0.375935671919414,0,0,0,0,0,0,0,0.430018749454354,0,0.407948941145488,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0.620597975171371,0,0.23806443146374,0,0.0620747142958579,0,1.01835453245064,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p5@SLC6A12 | |||
}} |
Revision as of 11:22, 11 January 2014
Short description: | p5@SLC6A12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SLC6A12_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 0bp_to_ENST00000359674, NM_001122847, uc001qia.2_5end |
EntrezGene: | SLC6A12 |
HGNC: | 11045 |
UniProt: | P48065 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system pericyte | 8.66e-16 | 2 |
conventional dendritic cell | 7.27e-13 | 8 |
macrophage | 2.57e-11 | 6 |
immature conventional dendritic cell | 3.78e-11 | 5 |
common dendritic progenitor | 3.78e-11 | 5 |
dendritic cell | 1.48e-10 | 10 |
pericyte cell | 2.47e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 1.98e-08 | 1 |
cranial nerve | 1.98e-08 | 1 |
nerve trunk | 1.98e-08 | 1 |
nerve connecting eye with brain | 1.98e-08 | 1 |
nerve | 1.98e-08 | 1 |
retinal neural layer | 1.98e-08 | 1 |
presumptive neural retina | 1.98e-08 | 1 |