FFCP PHASE1:Hg19::chr17:58165660..58165685,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-6bp_to_uc002iyl.2_5end | |||
|coexpression_cluster_id=C61 | |||
|description=CAGE_peak_1_at_uc002iyl.2_5end | |||
|id=chr17:58165660..58165685,- | |||
|ontology_enrichment_celltype=CL:0000055!5.15e-25!180;CL:0000680!1.98e-18!57;CL:0000056!1.98e-18!57;CL:0000355!1.98e-18!57;CL:0000187!5.62e-17!54;CL:0000183!1.04e-15!59;CL:0000192!2.88e-15!42;CL:0000514!2.88e-15!42;CL:0000393!1.27e-14!60;CL:0000211!1.27e-14!60;CL:0000359!3.04e-13!32;CL:0000057!1.40e-12!75 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.89e-13;32!CL:0000192;7.99e-12;43!CL:0000187;1.47e-10;55!CL:0000393;2.15e-07;61!CL:0000211;2.15e-07;61!CL:0000990;3.86e-07;8!CL:0000499;5.93e-07;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,1.13e-20,58;CL:0000056,1.13e-20,58;CL:0000355,1.13e-20,58;CL:0000187,5.47e-19,55;CL:0000192,9.66e-17,43;CL:0000514,9.66e-17,43;CL:0000393,7.67e-16,61;CL:0000211,7.67e-16,61;CL:0000359,4.93e-14,32;CL:0000057,1.35e-10,76;CL:0000222,2.73e-08,121;CL:0000499,3.86e-07,28;CL:0000990,3.89e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000514;7.99e-12;43!CL:0000355;1.00e-10;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!4.58e-17!83;UBERON:0002329!4.58e-17!83;UBERON:0003077!4.58e-17!83;UBERON:0003059!4.58e-17!83;UBERON:0007282!4.58e-17!83;UBERON:0009618!4.58e-17!83;UBERON:0007285!4.58e-17!83;UBERON:0001134!1.55e-16!61;UBERON:0002036!1.55e-16!61;UBERON:0003082!1.55e-16!61;UBERON:0004290!2.17e-16!70;UBERON:0002385!4.21e-16!63;UBERON:0001015!4.21e-16!63;UBERON:0000383!4.21e-16!63;UBERON:0000486!7.46e-16!82;UBERON:0003104!1.85e-13!238;UBERON:0009142!1.85e-13!238;UBERON:0000926!4.44e-11!448;UBERON:0004120!4.44e-11!448;UBERON:0006603!4.44e-11!448;UBERON:0000481!3.45e-09!347;UBERON:0005256!5.41e-09!143;UBERON:0002100!1.17e-08!216;UBERON:0001737!1.02e-07!9;UBERON:0001637!1.96e-07!42;UBERON:0003509!1.96e-07!42;UBERON:0004572!1.96e-07!42;UBERON:0004573!3.09e-07!33;UBERON:0004571!3.09e-07!33;UBERON:0000468!6.69e-07!659;UBERON:0003102!7.58e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;9.09e-09;9!UBERON:0001557;9.09e-09;9!UBERON:0002385;2.83e-07;31!UBERON:0001015;2.83e-07;31!UBERON:0000383;2.83e-07;31!UBERON:0004573;9.81e-07;33!UBERON:0004571;9.81e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,5.76e-18,62;UBERON:0002036,5.76e-18,62;UBERON:0003082,5.76e-18,62;UBERON:0007524,5.30e-17,73;UBERON:0002329,5.87e-17,71;UBERON:0003059,5.87e-17,71;UBERON:0007282,5.87e-17,71;UBERON:0004290,5.87e-17,71;UBERON:0009618,5.87e-17,71;UBERON:0002385,9.26e-17,64;UBERON:0001015,9.26e-17,64;UBERON:0000383,9.26e-17,64;UBERON:0003077,2.02e-16,72;UBERON:0007285,2.02e-16,72;UBERON:0000486,9.71e-16,83;UBERON:0007503,3.64e-14,78;UBERON:0005256,3.44e-09,122;UBERON:0003104,7.71e-09,160;UBERON:0009142,7.71e-09,160;UBERON:0001737,9.20e-09,9;UBERON:0001637,3.08e-08,42;UBERON:0003509,3.08e-08,42;UBERON:0004572,3.08e-08,42;UBERON:0004573,1.38e-07,33;UBERON:0004571,1.38e-07,33;UBERON:0001557,2.78e-07,19;UBERON:0004872,3.86e-07,83 | |||
|phase1_expression=6.7221000330106,12.417830385677,4.22863212287913,8.00586386825043,8.04529969969118,29.6595098194125,0,0.631719873426831,0,1.22866968250754,2.79120467188971,19.004399375325,24.7940959534746,22.4017098857684,21.5408294223145,24.2037052722639,13.2592796165275,18.9880623500717,12.1983199697627,1.47745269692145,3.67201244239655,4.07491137921514,0.286235987131057,0.136874425072884,1.75759695432724,0.0764134057479513,0,0,0,0,0.154816123316076,2.75826367343678,1.204823675113,0.369754010166788,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35426486594342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0.400395987036012,0,0,0,0.569212969109448,0,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,1.34140171940727,1.15076305659177,7.59022220007589,9.5254203020819,6.0835537963546,0,3.40644409211845,0,0.221729397462564,0.175669571386252,1.11332214173056,3.27865759463288,3.33705998505986,337.853836794525,282.438433899411,98.3888907839602,0,0.571994910780128,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.61656431285521,43.733531749188,6.71141711822273,8.07696002960635,8.3182620017156,3.54668382198357,15.1382952038423,20.2823091886439,37.4934673594083,1.55605517699883,7.54379763590253,0.817309515567294,12.5626664945293,6.33793516927999,6.32667865951251,0,0.570471821544449,0.149448680551801,0.23486899728753,1.45685649931318,1.12360645361799,2.24569588380383,0.982674538494144,2.89312187292143,0,0.494533858557114,0.910161361938026,4.31170885089743,1.34668891163253,0.750711119231785,0.554128230968366,0.877955241761676,1.22595118319608,0.901428353439581,2.83580457900053,1.25572744982203,4.27114777637135,8.05341224406335,6.60200411385685,3.91599611106068,8.75977836155139,14.517114793864,2.70042131586026,4.67697624773753,5.80597680761463,11.8744369248566,5.98090410229604,6.39017266529906,7.15339897416246,5.4259389539356,1.15956511897978,1.09098448236334,0.286804595389004,0,0,0.464775771478074,0,0,0.72995471815166,45.3703643756466,18.6539872075937,1.38134921352481,4.17931135228781,19.4907460050788,61.2829224206391,38.9430634080415,38.3207537514736,55.9190441753237,38.3467821602635,41.5223583444419,58.9212816659918,48.8591448162112,36.9357270668535,0,7.01208869017229,6.173610169971,13.2307840246988,0,0,0,0,0,0,0.329250856225877,0,0,0.185176890317059,10.1000574646201,5.19967392639789,0,0,0,0,0,0,0,0,3.93947209739836,16.6143028248859,14.7144850665841,0.93733833986777,0,2.55195175036296,0.0895585227028483,0.290633938513962,1.15014803749563,0,0,0.207328115540772,0.432359860250884,0.6312121671319,0,0,0,3.4214489204541,0,0,0,4.70950554250515,6.97536110133248,1.9067954313447,12.1515412812311,0,0,2.6593811658487,0,1.54324424557285,2.83698264046557,3.46348832720929,8.14974563851441,15.1934049509604,47.7479395332846,0,7.10783897485092,8.71147060226772,0.301439377059586,0,0.299918973546171,0,0.502257091432126,2.10833939483032,47.4457213873334,13.7834323000937,4.27910715122155,24.757603440156,15.8216768363795,9.84835297819426,0,0,0,0,0,0,0,0,0,0.749007023947182,0,0,7.23879801142925,17.5059682370887,12.2069260664881,9.56665963041713,28.9054961851402,34.8522337224996,27.6453739382803,7.22270639346525,27.2889004867182,42.423959229927,4.64957918974806,7.37476674166813,0.955719759148911,3.91602314925481,5.83343820478455,0.206768026122887,0,0.320182673410333,21.5220575726844,56.588049433569,20.5625399464183,12.9016060065764,11.3561860233166,8.13914273855913,11.0199668359903,14.3278029738677,8.68611174175481,17.8101679733989,1.07946785661859,0.355123450626254,4.59912073677331,3.63478100428535,3.48631135379878,0.120859449591622,0,3.13075362382048,2.41110341145674,3.64182336013434,3.93373244878272,0,0,0,0,0.105551628892876,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0.721287081534056,0.183138929636687,0.082509499920588,1.14853107599234,0.650060246036521,11.2478750890912,6.28359668898793,10.1672087295665,9.51722783302003,3.30807773962873,5.80069322288678,8.84601832876794,5.96586391912706,6.14321045962488,1.4875642382488,1.92190067365106,1.02090169995667,0.30347334256665,8.83206543664843,5.03699754929024,6.970372701606,19.4061155510936,18.6307110610958,8.69932992075073,12.6020468990666,25.1899800665905,24.562452377738,18.9827654831236,15.6316759017536,11.51540060901,2.56763392820352,0.636406495851874,28.2581510471723,8.63387796399911,5.21620356498504,1.7671860351853,14.9615036364254,1.58510321173008,12.2164952309305,24.8693206935691,15.8413768260335,4.22600587027022,2.18399858252777,10.322596532621,1.13008116620243,0.551365343546124,22.5569251582015,32.0069146235247,19.0995926308007,7.87073702455959,11.7688018638368,61.6548761218503,9.29595488356397,1.14729081763241,9.23540985523339,16.0501973166563,0,22.1663017062547,5.92730807327823,2.27683904259429,10.8479763275945,0.962221127255121,0,0,0.847294206991012,0,0,1.33029046061003,0.229723400206959,0,0,0,0.476463550915578,0.411362273086194,0,0,0.793125176294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| |||
|short_description=p1@uc002iyl.2 | |||
}} |
Revision as of 16:38, 20 January 2014
Short description: | p1@uc002iyl.2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_uc002iyl.2_5end |
Coexpression cluster: | C61_migratory_Dendritic_immature_Macrophage_xeroderma_cord_b |
Association with transcript: | -6bp_to_uc002iyl.2_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 1.13e-20 | 58 |
myoblast | 1.13e-20 | 58 |
multi-potent skeletal muscle stem cell | 1.13e-20 | 58 |
muscle cell | 5.47e-19 | 55 |
smooth muscle cell | 9.66e-17 | 43 |
smooth muscle myoblast | 9.66e-17 | 43 |
electrically responsive cell | 7.67e-16 | 61 |
electrically active cell | 7.67e-16 | 61 |
vascular associated smooth muscle cell | 4.93e-14 | 32 |
fibroblast | 1.35e-10 | 76 |
mesodermal cell | 2.73e-08 | 121 |
stromal cell | 3.86e-07 | 28 |
conventional dendritic cell | 3.89e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 5.76e-18 | 62 |
striated muscle tissue | 5.76e-18 | 62 |
myotome | 5.76e-18 | 62 |
dense mesenchyme tissue | 5.30e-17 | 73 |
somite | 5.87e-17 | 71 |
presomitic mesoderm | 5.87e-17 | 71 |
presumptive segmental plate | 5.87e-17 | 71 |
dermomyotome | 5.87e-17 | 71 |
trunk paraxial mesoderm | 5.87e-17 | 71 |
muscle tissue | 9.26e-17 | 64 |
musculature | 9.26e-17 | 64 |
musculature of body | 9.26e-17 | 64 |
paraxial mesoderm | 2.02e-16 | 72 |
presumptive paraxial mesoderm | 2.02e-16 | 72 |
multilaminar epithelium | 9.71e-16 | 83 |
epithelial vesicle | 3.64e-14 | 78 |
trunk mesenchyme | 3.44e-09 | 122 |
mesenchyme | 7.71e-09 | 160 |
entire embryonic mesenchyme | 7.71e-09 | 160 |
larynx | 9.20e-09 | 9 |
artery | 3.08e-08 | 42 |
arterial blood vessel | 3.08e-08 | 42 |
arterial system | 3.08e-08 | 42 |
systemic artery | 1.38e-07 | 33 |
systemic arterial system | 1.38e-07 | 33 |
upper respiratory tract | 2.78e-07 | 19 |
splanchnic layer of lateral plate mesoderm | 3.86e-07 | 83 |