FFCP PHASE1:Hg19::chr17:73874641..73874653,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=91107 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19020 | |||
|TSSclassifier=strong | |||
|UniProt=Q96LD4 | |||
|association_with_transcript=2bp_to_ENST00000254816,NM_033452,uc002jpw.2_5end | |||
|coexpression_cluster_id=C3678 | |||
|description=CAGE_peak_5_at_TRIM47_5end | |||
|id=chr17:73874641..73874653,- | |||
|ontology_enrichment_celltype=CL:0002078!7.34e-19!44;CL:0000115!2.23e-18!35;CL:0000213!1.94e-17!57;CL:0000215!1.94e-17!57;CL:0002139!5.89e-13!24;CL:0000066!1.22e-11!254;CL:0000071!2.15e-10!18;CL:0002546!2.15e-10!18;CL:0000222!2.53e-08!119;CL:0000076!1.46e-07!62;CL:0000220!1.55e-07!246;CL:0002321!3.60e-07!248 | |||
|ontology_enrichment_celltype_v019=CL:0000115;1.99e-19;36!CL:0002078;4.48e-17;45!CL:0002139;1.75e-16;24!CL:0000071;3.47e-12;18!CL:0000213;2.11e-09;58!CL:0000215;2.11e-09;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,5.59e-24,36;CL:0002078,6.26e-24,45;CL:0000213,8.98e-19,58;CL:0000215,8.98e-19,58;CL:0002139,1.96e-16,24;CL:0000071,2.50e-12,18;CL:0002546,2.50e-12,18;CL:0000222,7.43e-07,121 | |||
|ontology_enrichment_development_v019=CL:0002546;3.47e-12;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000477!2.50e-21!286;UBERON:0004111!4.82e-19!241;UBERON:0000467!1.86e-18!625;UBERON:0000480!3.26e-18!626;UBERON:0000483!1.00e-17!309;UBERON:0000119!1.80e-17!312;UBERON:0002050!9.82e-16!605;UBERON:0005423!9.82e-16!605;UBERON:0000923!1.84e-15!604;UBERON:0005291!1.84e-15!604;UBERON:0006598!1.84e-15!604;UBERON:0002532!1.84e-15!604;UBERON:0000922!1.93e-15!612;UBERON:0000468!2.05e-15!659;UBERON:0000025!1.19e-14!194;UBERON:0007023!4.97e-13!115;UBERON:0000481!3.03e-12!347;UBERON:0001986!2.15e-10!18;UBERON:0004638!2.15e-10!18;UBERON:0004852!2.15e-10!18;UBERON:0000062!2.51e-10!511;UBERON:0004121!2.53e-10!169;UBERON:0005743!3.23e-10!86;UBERON:0003075!4.96e-10!86;UBERON:0007284!4.96e-10!86;UBERON:0001049!1.37e-09!57;UBERON:0005068!1.37e-09!57;UBERON:0006241!1.37e-09!57;UBERON:0007135!1.37e-09!57;UBERON:0001017!2.10e-09!82;UBERON:0000924!2.82e-09!173;UBERON:0006601!2.82e-09!173;UBERON:0000064!3.12e-09!219;UBERON:0000955!3.24e-09!69;UBERON:0006238!3.24e-09!69;UBERON:0000475!4.46e-09!365;UBERON:0000033!5.50e-09!123;UBERON:0000153!1.07e-08!129;UBERON:0007811!1.07e-08!129;UBERON:0002346!1.45e-08!90;UBERON:0000073!3.18e-08!94;UBERON:0001016!3.18e-08!94;UBERON:0002616!1.01e-07!59;UBERON:0006914!2.43e-07!25;UBERON:0003103!3.11e-07!69;UBERON:0003914!4.52e-07!118;UBERON:0000487!8.05e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;3.47e-12;18!UBERON:0001986;3.47e-12;18!UBERON:0004852;3.47e-12;18!UBERON:0006914;9.62e-11;25!UBERON:0000487;3.30e-09;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004111,1.95e-14,240;UBERON:0004638,2.50e-12,18;UBERON:0001986,2.50e-12,18;UBERON:0004852,2.50e-12,18;UBERON:0000025,1.19e-11,192;UBERON:0006914,7.57e-11,25;UBERON:0000487,2.54e-09,22;UBERON:0007023,8.02e-09,114;UBERON:0000483,2.85e-08,306;UBERON:0000119,5.37e-08,309;UBERON:0003914,1.62e-07,117;UBERON:0000055,4.16e-07,68;UBERON:0001049,8.82e-07,56;UBERON:0005068,8.82e-07,56;UBERON:0006241,8.82e-07,56;UBERON:0007135,8.82e-07,56 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.140954404095971,0,0,0,0,0.631719873426831,0.522371256399677,0,4.18680700783456,0,0.263766978228454,0.123766352960047,0.331397375727916,0.672325146451775,0,0,0,0.246242116153576,0.204000691244253,1.25381888591235,0.286235987131057,1.23186982565596,1.12988375635323,0,0,0.0787107813136792,0,0,0,0,0.6024118375565,0.369754010166788,0,0,0,0,0,0,4.25439401055856,3.2389366601898,2.83333124397605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,0.12786256184353,1.44575660953827,2.00535164254356,1.88300474649071,0,3.89307896242109,0.0945348171640679,0.221729397462564,0.175669571386252,1.37528029272598,1.45718115317017,0.741568885568859,0,0.870648686496336,0.531831842075461,0,0,0,0.79504962946682,2.58070378531837,1.04142150482278,3.39184765154406,0.838998872419812,3.02629846134074,1.46296476575767,2.84258435086262,0.35576626268671,1.00416183829401,2.81980521976403,2.28081631715554,7.32186172644509,1.10298924103761,0.81014194788176,0.892997282840798,1.79623498100936,1.57656072676651,3.06633274931766,2.84779697870439,2.93122790288652,0,0,0.436094052142534,0,0.379891534993739,0.264818361626438,0.286836620748814,0.354668382198357,0.560677600142307,1.06748995729705,0.74000264525148,0.311211035399766,0.404132016209064,1.30769522490767,0,0.576175924479999,0,0.624320153660641,0,0.149448680551801,0.352303495931295,0.323745888736263,0,0,0.245668634623536,0.413303124703062,0,1.97813543422845,0.910161361938026,0.718618141816238,0.168336113954066,0.125118519871964,0.277064115484183,0.438977620880838,0.919463387397059,1.50238058906597,0,0.179389635688862,0.213557388818567,0,0,0,0,0.18611685633159,0,0.194874010322397,0.252433774244115,0,0.323292113637624,0,0,0,0.773043412653187,0,1.72082757233402,0,0,0,0.10366105501537,0,0,0,2.57296375277154,1.38134921352481,0.464367928031979,0,0.473227200159376,0.505754070234305,0.723033089650446,0.661763836394364,0.653638332277218,1.18635309555548,0.539325232640658,1.17732879075208,0,4.42893272774789,2.80483547606892,0,0,1.26755034821831,0,0,0,0,0,0.219500570817251,0,0.100528972411631,0.462942225792648,0.325808305310325,0,0,0.231860809950154,0,2.45422961193825,2.77791307545966,2.09279567458058,0,0,1.23108503043699,0.468008530278475,1.93220510975347,0,0.16798212819886,0.283550194484773,0.626909658919938,0.581267877027924,1.53353071666084,0,1.14462964217194,2.48793738648926,1.72943944100354,4.29224273649692,0.063497894292169,0.381988425558278,1.17217447210047,0,0.308482478109971,0.300343057843917,0,0,0.43596006883328,0.07333828582095,0,14.3062578340753,0,0.26593811658487,0,0.257207374262142,0,0,0,0,0,0.325736184293735,0,0,0,0,0.199945982364114,3.64871341923571,1.00451418286425,0,1.4377491329495,0,0,0.434343920002738,1.2328579353023,0.179060963239896,0,0,0,0,0.76228387266739,0,1.54657762555539,0.670065061337395,0,0,0,0,0.36807447515742,0,0.542530047399471,0.415941723061614,0,0,0,0.601892199455438,0,3.10419213877515,0,0.368738337083406,0.60818530127658,0.195801157462741,0,0,0,0,0,0,0.604780586659361,0,0,0,0,0,0,0,0.154209693802656,1.06537035187876,0.410635780069046,1.55776328755086,0.464841513839837,0,0.802025881213139,0.368323955743585,0.229628896329213,1.0925470080403,1.57349297951309,1.35359883872224,0,2.35304930753057,1.46139224653261,0.316654886678627,2.27466768141793,1.19065593693561,0.647747748306418,3.08454505380579,0.270946437543853,1.00337954770971,0.254876273045038,1.66215201785745,0.447749509444357,0,0,1.53870075069834,0.328014645699706,0.976135183992909,0.824328093181778,0,0,0.574265537996172,1.30012049207304,0,0.773365746336976,0.308097234229289,0.614014698904518,0,0.107420244868274,0.145016693914229,0.852266274161009,0.356128142586949,0.991709492165869,0.960950336825531,0.638063562472921,0.809262246844399,0,0,0,3.38836938193698,0.532306030317022,0,0,0.143124886741991,0,0.316379424718726,0.190630193923825,0.767693373934002,0.42793898803392,1.27281299170375,0,0.539617372749944,0,0.117812402345686,0,0,0,0.975267478179181,0,0,0.272999822815972,0.141405431953713,1.13008116620243,0.551365343546124,0,0,0.578775534266688,0,0.202910376962704,0,0.281695602532241,0,0.294747123039363,0,0,4.01104507065562,5.59801318031833,0.75894634753143,0.349934720244983,0.48111056362756,0.670302275535787,1.08890984861323,0.659006605437454,0,1.68471475667626,1.33029046061003,2.06751060186264,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199579371432817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0.748562161632879,1.46508179271894,0.121360521749513,0.334330152832435,0,1.19372242368845,1.18785872333055,0.307160702099232,2.98244294329889,1.26602474769461,0.222617410045812,0.329607748453519,0,1.59398390600856,0.552567831062295,0,0.20453736500431,0,0.311039587661807,0.449341755736634,1.07412704805365,0,1.97286811273867,0,0,2.90799823828566,0.927680981618513,1.99613798001194,0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| |||
|short_description=p5@TRIM47 | |||
}} |
Revision as of 17:24, 20 January 2014
Short description: | p5@TRIM47 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_TRIM47_5end |
Coexpression cluster: | C3678_Mast_Mesenchymal_Renal_breast_Synoviocyte_myeloma_CD14 |
Association with transcript: | 2bp_to_ENST00000254816, NM_033452, uc002jpw.2_5end |
EntrezGene: | TRIM47 |
HGNC: | 19020 |
UniProt: | Q96LD4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 5.59e-24 | 36 |
meso-epithelial cell | 6.26e-24 | 45 |
lining cell | 8.98e-19 | 58 |
barrier cell | 8.98e-19 | 58 |
endothelial cell of vascular tree | 1.96e-16 | 24 |
blood vessel endothelial cell | 2.50e-12 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.50e-12 | 18 |
mesodermal cell | 7.43e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
anatomical conduit | 1.95e-14 | 240 |
blood vessel endothelium | 2.50e-12 | 18 |
endothelium | 2.50e-12 | 18 |
cardiovascular system endothelium | 2.50e-12 | 18 |
tube | 1.19e-11 | 192 |
squamous epithelium | 7.57e-11 | 25 |
simple squamous epithelium | 2.54e-09 | 22 |
adult organism | 8.02e-09 | 114 |
epithelium | 2.85e-08 | 306 |
cell layer | 5.37e-08 | 309 |
epithelial tube | 1.62e-07 | 117 |
vessel | 4.16e-07 | 68 |
neural tube | 8.82e-07 | 56 |
neural rod | 8.82e-07 | 56 |
future spinal cord | 8.82e-07 | 56 |
neural keel | 8.82e-07 | 56 |