FFCP PHASE1:Hg19::chr1:234765017..234765038,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=100302691 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=37192 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-18bp_to_ENST00000429269,NR_033927_5end | |||
|coexpression_cluster_id=C21 | |||
|description=CAGE_peak_1_at_LINC00184_5end | |||
|id=chr1:234765017..234765038,+ | |||
|ontology_enrichment_celltype=CL:0000080!1.04e-13!6 | |||
|ontology_enrichment_celltype_v019=CL:0000084;3.21e-16;25!CL:0000542;4.48e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,3.15e-16,25;CL:0000827,3.15e-16,25;CL:0000838,4.99e-08,52;CL:0000542,6.96e-08,53;CL:0000051,6.96e-08,53;CL:0000988,8.17e-07,177 | |||
|ontology_enrichment_development_v019=CL:0000051;4.48e-07;53 | |||
|ontology_enrichment_disease=DOID:0060060!4.87e-10!1;DOID:0060061!4.87e-10!1;DOID:8691!4.87e-10!1;DOID:630!1.15e-09!1;DOID:0050177!1.15e-09!1;DOID:0050427!1.15e-09!1;DOID:0060058!2.64e-08!10 | |||
|ontology_enrichment_disease_v019=DOID:0060060;4.61e-26;1!DOID:0060061;4.61e-26;1!DOID:8691;4.61e-26;1!DOID:0060058;8.35e-23;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,4.61e-26,1;DOID:0060061,4.61e-26,1;DOID:8691,4.61e-26,1;DOID:0060058,8.04e-23,10;DOID:2531,3.53e-08,51;DOID:0060083,3.53e-08,51 | |||
|ontology_enrichment_uberon=UBERON:0000007!8.80e-18!2;UBERON:0002426!7.50e-10!1;UBERON:0003831!7.50e-10!1;UBERON:0003898!7.50e-10!1;UBERON:0004830!7.50e-10!1;UBERON:0001774!7.50e-10!1;UBERON:0003830!7.50e-10!1;UBERON:0005175!7.50e-10!1;UBERON:0003897!7.50e-10!1;UBERON:0001103!7.50e-10!1;UBERON:0010084!7.50e-10!1;UBERON:0003296!2.36e-09!4;UBERON:0010133!2.36e-09!4;UBERON:0002331!2.01e-08!10;UBERON:0000358!2.01e-08!10;UBERON:0000307!2.01e-08!10;UBERON:0000091!2.01e-08!10;UBERON:0000087!2.01e-08!10;UBERON:0007806!2.01e-08!10;UBERON:0008780!2.01e-08!10;UBERON:0005728!2.01e-08!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0002331;3.52e-23;10!UBERON:0000178;1.02e-15;15!UBERON:0000179;1.02e-15;15!UBERON:0000463;1.02e-15;15!UBERON:0000478;4.35e-10;24!UBERON:0002390;8.43e-08;32!UBERON:0000922;3.15e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,3.52e-23,10;UBERON:0000358,3.52e-23,10;UBERON:0000307,3.52e-23,10;UBERON:0000091,3.52e-23,10;UBERON:0000087,3.52e-23,10;UBERON:0007010,3.52e-23,10;UBERON:0007806,3.52e-23,10;UBERON:0008780,3.52e-23,10;UBERON:0005728,3.52e-23,10;UBERON:0000178,1.02e-15,15;UBERON:0000179,1.02e-15,15;UBERON:0000463,1.02e-15,15;UBERON:0000478,4.35e-10,24 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.00897137549192,0,0,0,0,0,0,0,1.6480387422676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,363.534903762443,265.168212979195,273.481085754788,0,0.802577647298789,0,0,0,0,0,0,0,0,1.35291077473043,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343189995723929,0,0,0,0,0,0,0,0,0,0,0,8.41239533693806,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.1988530227986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606965604236632,0.455324382702595,0.177404740325278,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795803100645473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | |||
|short_description=p1@LINC00184 | |||
}} |
Revision as of 00:48, 11 January 2014
Short description: | p1@LINC00184 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LINC00184_5end |
Coexpression cluster: | C21_cord_mycosis_hairy_xeroderma_adult_CD4_anaplastic |
Association with transcript: | -18bp_to_ENST00000429269, NR_033927_5end |
EntrezGene: | LINC00184 |
HGNC: | 37192 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 3.15e-16 | 25 |
pro-T cell | 3.15e-16 | 25 |
lymphoid lineage restricted progenitor cell | 4.99e-08 | 52 |
lymphocyte | 6.96e-08 | 53 |
common lymphoid progenitor | 6.96e-08 | 53 |
hematopoietic cell | 8.17e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 3.52e-23 | 10 |
blastocyst | 3.52e-23 | 10 |
blastula | 3.52e-23 | 10 |
bilaminar disc | 3.52e-23 | 10 |
inner cell mass | 3.52e-23 | 10 |
cleaving embryo | 3.52e-23 | 10 |
connecting stalk | 3.52e-23 | 10 |
inner cell mass derived epiblast | 3.52e-23 | 10 |
extraembryonic mesoderm | 3.52e-23 | 10 |
blood | 1.02e-15 | 15 |
haemolymphatic fluid | 1.02e-15 | 15 |
organism substance | 1.02e-15 | 15 |
extraembryonic structure | 4.35e-10 | 24 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 4.61e-26 | 1 |
cutaneous T cell lymphoma | 4.61e-26 | 1 |
mycosis fungoides | 4.61e-26 | 1 |
lymphoma | 8.04e-23 | 10 |
hematologic cancer | 3.53e-08 | 51 |
immune system cancer | 3.53e-08 | 51 |