FFCP PHASE1:Hg19::chr4:177714068..177714085,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7424 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12682 | |||
|TSSclassifier=weak | |||
|UniProt=P49767 | |||
|association_with_transcript=-173bp_to_NM_005429,uc003ius.1_5end | |||
|coexpression_cluster_id=C2788 | |||
|description=CAGE_peak_1_at_VEGFC_5end | |||
|id=chr4:177714068..177714085,- | |||
|ontology_enrichment_celltype=CL:0000055!1.12e-34!180;CL:0000057!3.27e-20!75;CL:0000222!1.05e-16!119;CL:0000680!1.27e-15!57;CL:0000056!1.27e-15!57;CL:0000355!1.27e-15!57;CL:0000220!6.50e-15!246;CL:0002321!1.81e-14!248;CL:0000192!2.60e-14!42;CL:0000514!2.60e-14!42;CL:0000183!5.80e-14!59;CL:0000187!7.61e-14!54;CL:0000359!8.59e-13!32;CL:0000393!8.00e-11!60;CL:0000211!8.00e-11!60;CL:0002620!1.55e-09!23;CL:0002371!6.53e-08!591;CL:0002334!1.26e-07!12;CL:0000144!8.41e-07!625 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.33e-12;32!CL:0000192;3.80e-11;43!CL:0002620;1.93e-10;23!CL:0000057;1.42e-09;73!CL:0002334;2.79e-08;12!CL:0000187;8.75e-08;55!CL:0002320;9.54e-08;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.86e-23,76;CL:0000222,2.57e-16,121;CL:0000680,7.29e-16,58;CL:0000056,7.29e-16,58;CL:0000355,7.29e-16,58;CL:0000192,1.31e-14,43;CL:0000514,1.31e-14,43;CL:0000187,5.82e-14,55;CL:0000359,1.84e-13,32;CL:0002321,2.41e-13,250;CL:0000393,9.72e-11,61;CL:0000211,9.72e-11,61;CL:0002620,1.55e-10,23;CL:0002334,2.90e-08,12 | |||
|ontology_enrichment_development_v019=CL:0000514;3.80e-11;43!CL:0000355;1.03e-08;58 | |||
|ontology_enrichment_disease=DOID:2394!3.44e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;5.67e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,5.86e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!6.10e-22!83;UBERON:0002329!6.10e-22!83;UBERON:0003077!6.10e-22!83;UBERON:0003059!6.10e-22!83;UBERON:0007282!6.10e-22!83;UBERON:0009618!6.10e-22!83;UBERON:0007285!6.10e-22!83;UBERON:0000486!8.11e-22!82;UBERON:0000475!1.57e-20!365;UBERON:0005256!2.55e-19!143;UBERON:0002100!6.23e-19!216;UBERON:0004290!7.77e-18!70;UBERON:0001637!3.01e-15!42;UBERON:0003509!3.01e-15!42;UBERON:0004572!3.01e-15!42;UBERON:0001134!5.83e-15!61;UBERON:0002036!5.83e-15!61;UBERON:0003082!5.83e-15!61;UBERON:0003102!1.19e-14!95;UBERON:0000055!1.23e-14!69;UBERON:0002385!1.55e-14!63;UBERON:0001015!1.55e-14!63;UBERON:0000383!1.55e-14!63;UBERON:0001981!2.58e-14!60;UBERON:0007500!2.58e-14!60;UBERON:0004537!2.58e-14!60;UBERON:0006965!2.58e-14!60;UBERON:0004872!7.49e-14!84;UBERON:0002049!1.87e-13!79;UBERON:0007798!1.87e-13!79;UBERON:0000119!2.05e-13!312;UBERON:0000483!2.17e-13!309;UBERON:0004573!9.47e-13!33;UBERON:0004571!9.47e-13!33;UBERON:0003914!2.25e-12!118;UBERON:0000490!3.48e-12!138;UBERON:0000481!5.16e-12!347;UBERON:0000468!9.82e-12!659;UBERON:0003104!3.77e-11!238;UBERON:0009142!3.77e-11!238;UBERON:0000467!1.03e-10!625;UBERON:0000480!1.66e-10!626;UBERON:0004111!2.81e-10!241;UBERON:0000477!2.91e-10!286;UBERON:0002199!1.14e-08!45;UBERON:0002416!1.14e-08!45;UBERON:0001009!1.75e-08!113;UBERON:0004535!2.67e-08!110;UBERON:0002097!7.86e-08!40;UBERON:0000947!3.64e-07!21;UBERON:0010191!3.64e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.09e-12;33!UBERON:0004571;1.09e-12;33!UBERON:0001637;5.97e-12;42!UBERON:0003509;5.97e-12;42!UBERON:0004572;5.97e-12;42!UBERON:0007500;3.76e-08;56!UBERON:0001981;3.76e-08;56!UBERON:0004537;3.76e-08;56!UBERON:0000947;8.64e-08;21!UBERON:0010191;8.64e-08;21!UBERON:0000055;2.29e-07;65!UBERON:0002097;4.23e-07;41!UBERON:0002384;5.87e-07;198!UBERON:0002204;6.30e-07;70 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,5.73e-23,83;UBERON:0007503,1.34e-20,78;UBERON:0002329,1.78e-18,71;UBERON:0003059,1.78e-18,71;UBERON:0007282,1.78e-18,71;UBERON:0004290,1.78e-18,71;UBERON:0009618,1.78e-18,71;UBERON:0007524,7.29e-18,73;UBERON:0003077,7.47e-18,72;UBERON:0007285,7.47e-18,72;UBERON:0001637,1.10e-16,42;UBERON:0003509,1.10e-16,42;UBERON:0004572,1.10e-16,42;UBERON:0005256,3.07e-16,122;UBERON:0003102,3.93e-16,99;UBERON:0001134,2.44e-15,62;UBERON:0002036,2.44e-15,62;UBERON:0003082,2.44e-15,62;UBERON:0002100,3.68e-15,199;UBERON:0000055,5.01e-15,68;UBERON:0000490,5.94e-15,148;UBERON:0007500,1.64e-14,59;UBERON:0001981,1.64e-14,59;UBERON:0004537,1.64e-14,59;UBERON:0006965,1.64e-14,59;UBERON:0004872,3.28e-14,83;UBERON:0002385,3.56e-14,64;UBERON:0001015,3.56e-14,64;UBERON:0000383,3.56e-14,64;UBERON:0004573,6.34e-14,33;UBERON:0004571,6.34e-14,33;UBERON:0003104,3.94e-13,160;UBERON:0009142,3.94e-13,160;UBERON:0003914,1.19e-12,117;UBERON:0002049,2.23e-12,78;UBERON:0007798,2.23e-12,78;UBERON:0002199,6.71e-10,46;UBERON:0002416,6.71e-10,46;UBERON:0002097,5.66e-09,41;UBERON:0000483,6.37e-09,306;UBERON:0001009,9.66e-09,112;UBERON:0000119,1.28e-08,309;UBERON:0004535,1.54e-08,109;UBERON:0000947,9.35e-08,21;UBERON:0010191,9.35e-08,21 | |||
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| |||
|short_description=p1@VEGFC | |||
}} |
Revision as of 04:07, 22 January 2014
Short description: | p1@VEGFC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VEGFC_5end |
Coexpression cluster: | C2788_Urothelial_Fibroblast_Small_Smooth_Mallassezderived_Myoblast_Gingival |
Association with transcript: | -173bp_to_NM_005429, uc003ius.1_5end |
EntrezGene: | VEGFC |
HGNC: | 12682 |
UniProt: | P49767 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.86e-23 | 76 |
mesodermal cell | 2.57e-16 | 121 |
muscle precursor cell | 7.29e-16 | 58 |
myoblast | 7.29e-16 | 58 |
multi-potent skeletal muscle stem cell | 7.29e-16 | 58 |
smooth muscle cell | 1.31e-14 | 43 |
smooth muscle myoblast | 1.31e-14 | 43 |
muscle cell | 5.82e-14 | 55 |
vascular associated smooth muscle cell | 1.84e-13 | 32 |
embryonic cell | 2.41e-13 | 250 |
electrically responsive cell | 9.72e-11 | 61 |
electrically active cell | 9.72e-11 | 61 |
skin fibroblast | 1.55e-10 | 23 |
preadipocyte | 2.90e-08 | 12 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 5.86e-08 | 14 |