FFCP PHASE1:Hg19::chr9:125026936..125026952,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=92399 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7234 | |||
|TSSclassifier=strong | |||
|UniProt=Q96E11 | |||
|association_with_transcript=1bp_to_ENST00000344641_5end | |||
|description=CAGE_peak_3_at_MRRF_5end | |||
|id=chr9:125026936..125026952,+ | |||
|ontology_enrichment_celltype=CL:0002139!4.12e-09!24;CL:0000115!1.53e-08!35 | |||
|ontology_enrichment_celltype_v019=CL:0000115;6.00e-23;36!CL:0002139;4.66e-21;24!CL:0002078;5.22e-13;45!CL:0000071;3.06e-12;18!CL:0002138;1.33e-11;6!CL:0000213;1.65e-09;58!CL:0000215;1.65e-09;58!CL:0002188;2.67e-08;5!CL:0002543;6.58e-07;6!CL:0002544;7.59e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,4.56e-27,36;CL:0002139,2.46e-21,24;CL:0002078,1.97e-20,45;CL:0000213,4.41e-16,58;CL:0000215,4.41e-16,58;CL:0000071,2.40e-12,18;CL:0002546,2.40e-12,18;CL:0005020,8.00e-12,6;CL:0002138,8.00e-12,6;CL:0005022,8.00e-12,6;CL:0002188,1.51e-08,5;CL:0002543,3.40e-07,6;CL:0002544,9.91e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002546;3.06e-12;18!CL:0005022;1.33e-11;6!UBERON:0006603;8.27e-08;65 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;3.06e-12;18!UBERON:0001986;3.06e-12;18!UBERON:0004852;3.06e-12;18!UBERON:0000487;1.19e-11;22!UBERON:0006914;5.90e-10;25!UBERON:0001473;1.43e-08;8!UBERON:0004536;1.43e-08;8!UBERON:0006558;1.43e-08;8!UBERON:0004175;7.93e-08;21!UBERON:0000490;7.95e-08;33!UBERON:0002465;9.40e-07;10!UBERON:0001638;9.89e-07;9!UBERON:0003920;9.89e-07;9!UBERON:0004582;9.89e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,2.40e-12,18;UBERON:0001986,2.40e-12,18;UBERON:0004852,2.40e-12,18;UBERON:0000487,1.16e-11,22;UBERON:0000055,3.34e-10,68;UBERON:0006914,5.76e-10,25;UBERON:0000058,2.40e-09,19;UBERON:0001473,9.83e-09,8;UBERON:0004536,9.83e-09,8;UBERON:0006558,9.83e-09,8;UBERON:0002049,2.98e-08,78;UBERON:0007798,2.98e-08,78;UBERON:0004175,3.63e-08,25;UBERON:0004876,4.14e-08,11;UBERON:0005103,5.80e-08,8;UBERON:0000083,5.80e-08,8;UBERON:0009201,5.80e-08,8;UBERON:0006553,5.80e-08,8;UBERON:0003074,5.80e-08,8;UBERON:0003060,5.80e-08,8;UBERON:0003887,3.83e-07,12;UBERON:0001638,4.14e-07,9;UBERON:0003920,4.14e-07,9;UBERON:0004582,4.14e-07,9;UBERON:0000926,4.93e-07,315;UBERON:0004120,4.93e-07,315;UBERON:0006603,4.93e-07,315;UBERON:0000080,4.98e-07,9;UBERON:0002120,4.98e-07,9;UBERON:0004875,4.98e-07,9;UBERON:0005721,4.98e-07,9;UBERON:0005754,4.98e-07,9;UBERON:0007297,4.98e-07,9;UBERON:0002465,7.03e-07,10 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0.422863212287913,1.0007329835313,0.893922188854576,0,0,0,0.522371256399677,0,0,0,0,0,0,0,0.602694528023977,0.730310090387373,0,0,0.408001382488506,0.313454721478088,0.286235987131057,0,0,0,0.164201178899891,0,0,0,0.154816123316076,0,0.6024118375565,0.369754010166788,0.0774672005803016,0,0,0.553995408531877,0,0.217010870715852,0,0.32389366601898,0,0,0,0.242584061187816,0.232429036905685,0.411167888021826,0.929119112685311,0,0.256160706529101,0.236482229888585,0,0.645484683583826,0,0.188242339542605,0.272906150057846,0,0.306083892370903,0,0,0.329851300186716,0,0,0,0,0,0.251248665256743,0,0.217188844705117,1.81619850790011,0,0,0.211255286311942,0,0.419317291016752,0.22465726229299,0,0,0.285012743741249,0,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0.526768169550154,0.196709770113833,0,0.411202997999018,0.167186495390678,0,0,0,0.222820913770347,0.294605907474837,0,0,0.128091319725675,0,0,0.276350017785848,0,0,0,0,0,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0.12786256184353,0,0,0.579386075843295,0,0.486634870302636,0.189069634328136,0.443458794925128,0.175669571386252,0.851363990735132,0,0,0,0,0,0,0,0,0.79504962946682,0,1.04142150482278,1.13061588384802,0,0.550236083880135,0.417989933073621,10.5950871259425,8.18262404179434,7.02913286805807,2.41697590265488,0,2.19655851793353,2.94130464276695,1.62028389576352,3.30408994651095,1.79623498100936,0.900891843866578,1.53316637465883,0,1.46561395144326,0,0,0,0.496971951695318,0.12663051166458,0.529636723252875,0.573673241497627,0,0,2.1349799145941,0.74000264525148,0.622422070799533,0.404132016209064,0.980771418680752,0.302714855289863,0.576175924479999,0,0,1.1409436430889,0.298897361103602,0.23486899728753,0.161872944368132,0,0,0.122834317311768,0.206651562351531,0,0,0,0,0,0.250237039743928,0.277064115484183,0,0.30648779579902,0.150238058906597,0.113432183160021,0.179389635688862,0.640672166455702,0.635795703478686,0,0.412210116953756,0.257640540045629,0.37223371266318,0.337552664482532,0.389748020644795,0.504867548488229,0.276149695926898,0.646584227275248,0,0,0,0,0,0,0.243947412259191,0.265059536642971,0,0,0.252320850875628,1.09493207722749,0,0,1.38134921352481,0,0,0,0.168584690078102,0,0,0.217879444092406,0,0,0.196221465125346,0.38474715694639,3.69077727312324,2.80483547606892,0,0,0,0,0,0.441463099414651,0.368965315629341,0.343135620597051,0,0,0,0,0,0,0,0,0.117408694235822,1.73239737313289,2.77791307545966,0.951270761172991,0,0,0,0,0,0.93733833986777,0,0,0.447792613514241,1.16253575405585,0.766765358330422,1.97065295158377,0.176096868026452,0,0.432359860250884,0,0.063497894292169,0,0,0,0.102827492703324,0.901029173531752,0.857479297891735,0.112131084345361,0,0.1466765716419,1.03417372606222,0,0,0.26593811658487,1.04007436911366,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,1.00451418286425,0,0,0,1.42636905040718,0.289562613335158,0.410952645100767,0,0.112085143993527,0,0,0.256686072559497,0,1.30139853857622,0,0,0,0,0,0.414415513436035,0.49076596687656,0,0,0.415941723061614,0,0.473107245101804,0.35142424497814,0.300946099727719,0,1.03473071292505,0,0.184369168541703,0.173767228936166,0.195801157462741,0,0,0.215714200818617,0.106727557803444,1.21251028578504,0,0,0.496215615637554,0.306923946576125,0,0.128139149255701,0.511707249066704,0.160853921143607,0,0,0,0.492762936082855,0,0,0.362578348774867,0.802025881213139,0.0920809889358963,0.229628896329213,0.182091168006717,0.393373244878272,0,0.15403067420883,0,0,0.105551628892876,3.4120015221269,1.53084334748864,1.51141141271498,1.54227252690289,0,0,0.254876273045038,0,0,0,0,0.512900250232778,0.328014645699706,0.976135183992909,0.824328093181778,0.27470839445503,0.082509499920588,0,0,0,0.290012154876366,0,0.15350367472613,0.275673144969061,0.107420244868274,0.145016693914229,0.0852266274161009,0.445160178233687,0.165284915360978,0,0.382838137483752,0.2023155617111,0,0.62962469366128,0,0,0,0.869932992075073,0.37064843820784,0.286249773483982,0.372158369359667,0.316379424718726,0.190630193923825,0,0,0,0.78494864019923,0,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0.272999822815972,0.141405431953713,0,0,0,0,0,0,0.608731130888112,0.30982349809975,0,0.286822704408103,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.753150406214233,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0.320472213382419,0,0,0.185803175125719,0.144269212976445,0,0.159426272728822,0,0,0.211673582723883,0,0,0,0,0,0,0.1605880751037,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0.37428108081644,4.39524537815682,0.121360521749513,0,1.13654458722565,0.23874448473769,0.296964680832639,0,0,0.422008249231538,1.33570446027487,0,0.211125408127993,0.398495976502139,0.552567831062295,0,0.102268682502155,0,0.311039587661807,0.449341755736634,0,0,0.591860433821602,0,0,0,0.185536196323703,0,0.520855522170466,0.0874599999961957,3.62499787717397,0.227586896570999,0.254253650292766,0,0,0.291604613383254,0.347249989866585,0.885741385813839,0.60298219312704,0,0.221158519862449,0,0.219385397153973,1.525138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| |||
|short_description=p3@MRRF | |||
}} |
Revision as of 03:10, 23 January 2014
Short description: | p3@MRRF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_MRRF_5end |
Coexpression cluster: | NA |
Association with transcript: | 1bp_to_ENST00000344641_5end |
EntrezGene: | MRRF |
HGNC: | 7234 |
UniProt: | Q96E11 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 4.56e-27 | 36 |
endothelial cell of vascular tree | 2.46e-21 | 24 |
meso-epithelial cell | 1.97e-20 | 45 |
lining cell | 4.41e-16 | 58 |
barrier cell | 4.41e-16 | 58 |
blood vessel endothelial cell | 2.40e-12 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.40e-12 | 18 |
lymphangioblast | 8.00e-12 | 6 |
endothelial cell of lymphatic vessel | 8.00e-12 | 6 |
vascular lymphangioblast | 8.00e-12 | 6 |
glomerular endothelial cell | 1.51e-08 | 5 |
vein endothelial cell | 3.40e-07 | 6 |
aortic endothelial cell | 9.91e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 2.40e-12 | 18 |
endothelium | 2.40e-12 | 18 |
cardiovascular system endothelium | 2.40e-12 | 18 |
simple squamous epithelium | 1.16e-11 | 22 |
vessel | 3.34e-10 | 68 |
squamous epithelium | 5.76e-10 | 25 |
duct | 2.40e-09 | 19 |
lymphatic vessel | 9.83e-09 | 8 |
lymph vasculature | 9.83e-09 | 8 |
lymphatic part of lymphoid system | 9.83e-09 | 8 |
vasculature | 2.98e-08 | 78 |
vascular system | 2.98e-08 | 78 |
internal genitalia | 3.63e-08 | 25 |
urogenital ridge | 4.14e-08 | 11 |
mesonephric epithelium | 5.80e-08 | 8 |
mesonephric tubule | 5.80e-08 | 8 |
nephric duct | 5.80e-08 | 8 |
renal duct | 5.80e-08 | 8 |
mesonephric duct | 5.80e-08 | 8 |
pronephric duct | 5.80e-08 | 8 |
intraembryonic coelom | 3.83e-07 | 12 |
vein | 4.14e-07 | 9 |
venous blood vessel | 4.14e-07 | 9 |
venous system | 4.14e-07 | 9 |
mesoderm | 4.93e-07 | 315 |
mesoderm-derived structure | 4.93e-07 | 315 |
presumptive mesoderm | 4.93e-07 | 315 |
mesonephros | 4.98e-07 | 9 |
pronephros | 4.98e-07 | 9 |
nephrogenic cord | 4.98e-07 | 9 |
pronephric mesoderm | 4.98e-07 | 9 |
rostral part of nephrogenic cord | 4.98e-07 | 9 |
presumptive pronephric mesoderm | 4.98e-07 | 9 |
lymphoid system | 7.03e-07 | 10 |