FFCP PHASE1:Mm9::chr6:112996298..112996363,+: Difference between revisions
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{{FFCP|EntrezGene=14911|HGNC=|UniProt=P97770|association_with_transcript=0bp_to_ENSMUST00000137396,ENSMUST00000145054,ENSMUST00000152795,NM_008188,uc009dek.1,uc009del.1_5end|description=CAGE_peak_1_at_Thumpd3_5end|id=chr6:112996298..112996363,+|ontology_enrichment_celltype=CL:0000988!6.80e-08!32;CL:0002032!6.80e-08!32;CL:0000037!6.80e-08!32;CL:0000566!6.80e-08!32;CL:0000837!6.80e-08!32;CL:0000542!1.19e-07!13;CL:0000051!1.19e-07!13;CL:0000838!1.42e-07!12;CL:0000084!3.72e-07!11;CL:0000827!3.72e-07!11|ontology_enrichment_celltype_v019_2=CL:0000988,6.80e-08,32;CL:0002032,6.80e-08,32;CL:0000037,6.80e-08,32;CL:0000837,6.80e-08,32;CL:0000542,1.19e-07,13;CL:0000051,1.19e-07,13;CL:0000838,1.42e-07,12;CL:0000084,3.72e-07,11;CL:0000827,3.72e-07,11|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000072!8.29e-10!27;UBERON:0002193!1.68e-09!48;UBERON:0004177!2.93e-09!29;UBERON:0006562!3.14e-09!24;UBERON:0001557!3.14e-09!24;UBERON:0001042!3.14e-09!24;UBERON:0008814!3.14e-09!24;UBERON:0009145!3.14e-09!24;UBERON:0002390!6.32e-09!45;UBERON:0003061!6.32e-09!45;UBERON:0002370!7.16e-09!23;UBERON:0000974!7.16e-09!23;UBERON:0004807!7.16e-09!23;UBERON:0005058!7.16e-09!23;UBERON:0003351!7.16e-09!23;UBERON:0009113!7.16e-09!23;UBERON:0003295!7.16e-09!23;UBERON:0009722!7.16e-09!23;UBERON:0005562!7.16e-09!23;UBERON:0007690!7.16e-09!23;UBERON:0003408!1.71e-08!24;UBERON:0002405!2.23e-08!70;UBERON:0005057!2.93e-07!51|ontology_enrichment_uberon_v019_2=UBERON:0000072,8.29e-10,27;UBERON:0000077,9.86e-10,35;UBERON:0007811,1.57e-09,36;UBERON:0002193,1.68e-09,48;UBERON:0002405,1.68e-09,48;UBERON:0004177,2.93e-09,29;UBERON:0005057,2.93e-09,29;UBERON:0006562,3.14e-09,24;UBERON:0001557,3.14e-09,24;UBERON:0001042,3.14e-09,24;UBERON:0008814,3.14e-09,24;UBERON:0009145,3.14e-09,24;UBERON:0002390,6.32e-09,45;UBERON:0003061,6.32e-09,45;UBERON:0002370,7.16e-09,23;UBERON:0000974,7.16e-09,23;UBERON:0004807,7.16e-09,23;UBERON:0005058,7.16e-09,23;UBERON:0003351,7.16e-09,23;UBERON:0009113,7.16e-09,23;UBERON:0003295,7.16e-09,23;UBERON:0009722,7.16e-09,23;UBERON:0005562,7.16e-09,23;UBERON:0007690,7.16e-09,23;UBERON:0003408,1.71e-08,24;UBERON:0000153,3.29e-08,43|phase1_expression=18.2569685699465,9.42233600626275,12.739978702907,6.0492842261366,9.01612313903425,15.7806515597176,18.9226238882376,42.0942034419539,48.0089542537184,60.6227123173963,128.071040232678,98.2792998822544,41.601777373283,42.3114747707947,26.648780945253,29.7638643063044,25.1842276126133,38.9595774217424,39.4889568784528,27.585327366872,26.1082900763784,24.226992093016,31.8663742749501,21.4389846543165,22.0232909824483,13.2073351746455,14.2151458732495,17.2376986148711,22.2327400763957,19.1542898617547,13.3038306393183,16.5107975099504,15.9916844771988,15.8481681015439,38.7061170466708,32.083286554189,34.5046212083404,9.62622750694888,13.2827008569046,14.1351410872926,8.82347232046521,9.56263678941824,15.0508209439658,17.3737608806297,16.9299475136589,21.2914232507551,1.56478268869608,6.32272953503295,3.07560655828261,6.61061656852564,3.77963338388479,7.18762821824858,28.3552604237574,23.211588544363,28.9040667262519,12.8629718017974,12.0344044774278,15.9858348606007,6.67644320836673,8.46385566835253,8.87363964908651,6.43804610931351,2.66788438833342,9.44894703145469,8.89979726310277,7.104801149461,5.99200221036809,2.30530983192933,14.2054768862614,10.1254453748768,8.83364837675805,6.85562362569129,6.40518768759679,9.30930074033651,9.00947427571422,6.43453150627015,12.1127469099328,14.6840438797966,13.5173749265494,5.40733779693795,8.23388792421687,8.85552729946492,10.6089539620525,15.757353080887,18.3357897332172,12.0797720044204,19.0778052270798,13.047961207771,45.7386207732432,25.6187588762003,13.3337664802772,27.5335640634044,11.5595126730318,15.6513925574967,11.695975514058,15.6809410484067,24.0159958425296,18.7473354835864,24.1600984280668,18.0203183000274,22.9574774235989,16.6824420638613,5.09610479413291,14.2213340630666,24.8964697162896,22.8023878927589,25.2762222507392,18.2694207550496,44.2783781036664,22.860089415983,17.5220180033797,17.6589977421042,19.832932764021,22.9098413639986,21.518733405834,21.4889871173745,24.2251068379686,19.665512541108,24.7690954545965,16.8237523945306,20.0965781798958,19.8798853785441,24.2309289583559,12.296793474485,14.4518227701284,14.0501380364725,20.967646788536,28.1954283566902,24.7786942792476,15.5782264981016,26.5350349634803,28.6491922817331,19.8159725019195,20.9686675010871,19.5320761885986,19.1444690419954,16.5998163076016,19.0342665033442,28.5576717030052,24.2008134269445,25.893968149578,26.6686441142829,23.0479526150847,25.6198190320716,21.8397162275762,22.9323559309881,17.9907311154679,23.2833033665114,12.7185115830377,21.1798809787958,16.8913079197391,17.0972671293508,21.6876854395966,20.89512999133,29.4268455063359,22.0928036168527,40.7283648641676,27.7935739683892,23.5855704498342,18.8484453007307,18.7620847984877,20.7071370680167,18.4660893756464,19.0861304794982,22.0601971428951,18.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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:14911 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P97770 | |||
|association_with_transcript=0bp_to_ENSMUST00000137396,ENSMUST00000145054,ENSMUST00000152795,NM_008188,uc009dek.1,uc009del.1_5end | |||
|cluster_id=chr6:112996298..112996363,+ | |||
|description=CAGE_peak_1_at_Thumpd3_5end | |||
|id=chr6:112996298..112996363,+ | |||
|ontology_enrichment_celltype=CL:0000988!6.80e-08!32;CL:0002032!6.80e-08!32;CL:0000037!6.80e-08!32;CL:0000566!6.80e-08!32;CL:0000837!6.80e-08!32;CL:0000542!1.19e-07!13;CL:0000051!1.19e-07!13;CL:0000838!1.42e-07!12;CL:0000084!3.72e-07!11;CL:0000827!3.72e-07!11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,6.80e-08,32;CL:0002032,6.80e-08,32;CL:0000037,6.80e-08,32;CL:0000837,6.80e-08,32;CL:0000542,1.19e-07,13;CL:0000051,1.19e-07,13;CL:0000838,1.42e-07,12;CL:0000084,3.72e-07,11;CL:0000827,3.72e-07,11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000072!8.29e-10!27;UBERON:0002193!1.68e-09!48;UBERON:0004177!2.93e-09!29;UBERON:0006562!3.14e-09!24;UBERON:0001557!3.14e-09!24;UBERON:0001042!3.14e-09!24;UBERON:0008814!3.14e-09!24;UBERON:0009145!3.14e-09!24;UBERON:0002390!6.32e-09!45;UBERON:0003061!6.32e-09!45;UBERON:0002370!7.16e-09!23;UBERON:0000974!7.16e-09!23;UBERON:0004807!7.16e-09!23;UBERON:0005058!7.16e-09!23;UBERON:0003351!7.16e-09!23;UBERON:0009113!7.16e-09!23;UBERON:0003295!7.16e-09!23;UBERON:0009722!7.16e-09!23;UBERON:0005562!7.16e-09!23;UBERON:0007690!7.16e-09!23;UBERON:0003408!1.71e-08!24;UBERON:0002405!2.23e-08!70;UBERON:0005057!2.93e-07!51 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000072,8.29e-10,27;UBERON:0000077,9.86e-10,35;UBERON:0007811,1.57e-09,36;UBERON:0002193,1.68e-09,48;UBERON:0002405,1.68e-09,48;UBERON:0004177,2.93e-09,29;UBERON:0005057,2.93e-09,29;UBERON:0006562,3.14e-09,24;UBERON:0001557,3.14e-09,24;UBERON:0001042,3.14e-09,24;UBERON:0008814,3.14e-09,24;UBERON:0009145,3.14e-09,24;UBERON:0002390,6.32e-09,45;UBERON:0003061,6.32e-09,45;UBERON:0002370,7.16e-09,23;UBERON:0000974,7.16e-09,23;UBERON:0004807,7.16e-09,23;UBERON:0005058,7.16e-09,23;UBERON:0003351,7.16e-09,23;UBERON:0009113,7.16e-09,23;UBERON:0003295,7.16e-09,23;UBERON:0009722,7.16e-09,23;UBERON:0005562,7.16e-09,23;UBERON:0007690,7.16e-09,23;UBERON:0003408,1.71e-08,24;UBERON:0000153,3.29e-08,43 | |||
|phase1_expression=18.2569685699465,9.42233600626275,12.739978702907,6.0492842261366,9.01612313903425,15.7806515597176,18.9226238882376,42.0942034419539,48.0089542537184,60.6227123173963,128.071040232678,98.2792998822544,41.601777373283,42.3114747707947,26.648780945253,29.7638643063044,25.1842276126133,38.9595774217424,39.4889568784528,27.585327366872,26.1082900763784,24.226992093016,31.8663742749501,21.4389846543165,22.0232909824483,13.2073351746455,14.2151458732495,17.2376986148711,22.2327400763957,19.1542898617547,13.3038306393183,16.5107975099504,15.9916844771988,15.8481681015439,38.7061170466708,32.083286554189,34.5046212083404,9.62622750694888,13.2827008569046,14.1351410872926,8.82347232046521,9.56263678941824,15.0508209439658,17.3737608806297,16.9299475136589,21.2914232507551,1.56478268869608,6.32272953503295,3.07560655828261,6.61061656852564,3.77963338388479,7.18762821824858,28.3552604237574,23.211588544363,28.9040667262519,12.8629718017974,12.0344044774278,15.9858348606007,6.67644320836673,8.46385566835253,8.87363964908651,6.43804610931351,2.66788438833342,9.44894703145469,8.89979726310277,7.104801149461,5.99200221036809,2.30530983192933,14.2054768862614,10.1254453748768,8.83364837675805,6.85562362569129,6.40518768759679,9.30930074033651,9.00947427571422,6.43453150627015,12.1127469099328,14.6840438797966,13.5173749265494,5.40733779693795,8.23388792421687,8.85552729946492,10.6089539620525,15.757353080887,18.3357897332172,12.0797720044204,19.0778052270798,13.047961207771,45.7386207732432,25.6187588762003,13.3337664802772,27.5335640634044,11.5595126730318,15.6513925574967,11.695975514058,15.6809410484067,24.0159958425296,18.7473354835864,24.1600984280668,18.0203183000274,22.9574774235989,16.6824420638613,5.09610479413291,14.2213340630666,24.8964697162896,22.8023878927589,25.2762222507392,18.2694207550496,44.2783781036664,22.860089415983,17.5220180033797,17.6589977421042,19.832932764021,22.9098413639986,21.518733405834,21.4889871173745,24.2251068379686,19.665512541108,24.7690954545965,16.8237523945306,20.0965781798958,19.8798853785441,24.2309289583559,12.296793474485,14.4518227701284,14.0501380364725,20.967646788536,28.1954283566902,24.7786942792476,15.5782264981016,26.5350349634803,28.6491922817331,19.8159725019195,20.9686675010871,19.5320761885986,19.1444690419954,16.5998163076016,19.0342665033442,28.5576717030052,24.2008134269445,25.893968149578,26.6686441142829,23.0479526150847,25.6198190320716,21.8397162275762,22.9323559309881,17.9907311154679,23.2833033665114,12.7185115830377,21.1798809787958,16.8913079197391,17.0972671293508,21.6876854395966,20.89512999133,29.4268455063359,22.0928036168527,40.7283648641676,27.7935739683892,23.5855704498342,18.8484453007307,18.7620847984877,20.7071370680167,18.4660893756464,19.0861304794982,22.0601971428951,18.3701816352822,17.9743178937745,22.8860071039652,20.2408615393581,19.7000956894914,19.9429271482805,21.0527981892479,23.4918623361424,17.7152472763691,21.449574753541,30.6655744890268,14.2080076683033,15.8670339998127,23.674995809411,27.6361639513922,20.2321914275687,20.3700359869576,20.6811580775729,21.3052701246066,14.2358718463353,22.8931547066375,26.3901969240283,27.65494961372,22.0309418444606,19.7740269903929,21.18152888772,20.7106924184542,14.035424670528,17.708519454508,20.2873924211545,19.3468761453049,16.4859614092482,18.1651773515925,17.706230394792,19.7797598292667,16.4848664233444,15.5480426541469,22.8268522857105,31.7005700860579,27.5182593158484,26.9834534861824,23.1260538382893,24.6000702947465,22.6617008085464,15.247895284893,24.3202840162553,21.9649130550465,11.5014565221884,20.8398930694362,26.5232022147376,24.2475722829227,22.2452792767171,17.3679667690812,21.0618636789929,21.0335467065238,22.6521317254416,19.6904299499218,19.9486711045227,16.5831194867398,10.4739201989846,13.6593553500459,13.8718926813448,13.5093460685753,15.1482030224613,18.8442811923099,20.0314578964439,14.7542039753142,24.1266054302836,26.1074728232981,23.6046851049137,24.5583704211212,23.6009367282054,21.8013737061498,18.0328439914343,13.8859009962405,18.9304931649754,24.9880796349849,17.2338718186239,23.1799734013975,23.8394581268162,22.3630459323178,20.6453457854196,21.0424217696145,25.693705566524,18.315315036043,23.1362338889478,10.6839362200353,19.0577742443684,19.6314446337317,17.2568679841952,25.2491861601181,17.8370898609203,19.4263232148575,12.4026795009925,17.8312385807478,19.1236936944484,24.7202936044704,23.5288269733916,22.4386098134429,27.4088382294997,15.470331487228,14.6389030474129,21.7873923777885,10.8661294377514,22.2910516432856,21.1034878034306,16.2315624017884,22.2141177812863,11.2652031172402,23.467170806371,24.3606881493393,24.4786521841008,30.8337293000568,24.3811284310817,32.8102311609168,31.514298816828,35.6185752446783,21.8610627472388,22.6218868452822,26.4849865236672,11.9704383418669,20.0010089559289,27.1250578086755,31.1662839203937,28.3684934776088,19.8874763092811,21.272620753196,17.4131966993574,17.184071124272,16.6076396630096,18.70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| |||
|short_description=p1@Thumpd3 | |||
}} |
Revision as of 21:45, 4 August 2015
Short description: | p1@Thumpd3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Thumpd3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000137396, ENSMUST00000145054, ENSMUST00000152795, NM_008188, uc009dek.1, uc009del.1_5end |
EntrezGene: | 14911 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 6.80e-08 | 32 |
hematopoietic oligopotent progenitor cell | 6.80e-08 | 32 |
hematopoietic stem cell | 6.80e-08 | 32 |
hematopoietic multipotent progenitor cell | 6.80e-08 | 32 |
lymphocyte | 1.19e-07 | 13 |
common lymphoid progenitor | 1.19e-07 | 13 |
lymphoid lineage restricted progenitor cell | 1.42e-07 | 12 |
T cell | 3.72e-07 | 11 |
pro-T cell | 3.72e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
segment of respiratory tract | 8.29e-10 | 27 |
mixed endoderm/mesoderm-derived structure | 9.86e-10 | 35 |
craniocervical region | 1.57e-09 | 36 |
hemolymphoid system | 1.68e-09 | 48 |
immune system | 1.68e-09 | 48 |
hemopoietic organ | 2.93e-09 | 29 |
immune organ | 2.93e-09 | 29 |
pharynx | 3.14e-09 | 24 |
upper respiratory tract | 3.14e-09 | 24 |
chordate pharynx | 3.14e-09 | 24 |
pharyngeal arch system | 3.14e-09 | 24 |
pharyngeal region of foregut | 3.14e-09 | 24 |
hematopoietic system | 6.32e-09 | 45 |
blood island | 6.32e-09 | 45 |
thymus | 7.16e-09 | 23 |
neck | 7.16e-09 | 23 |
respiratory system epithelium | 7.16e-09 | 23 |
hemolymphoid system gland | 7.16e-09 | 23 |
pharyngeal epithelium | 7.16e-09 | 23 |
thymic region | 7.16e-09 | 23 |
pharyngeal gland | 7.16e-09 | 23 |
entire pharyngeal arch endoderm | 7.16e-09 | 23 |
thymus primordium | 7.16e-09 | 23 |
early pharyngeal endoderm | 7.16e-09 | 23 |
gland of gut | 1.71e-08 | 24 |
anterior region of body | 3.29e-08 | 43 |