FFCP PHASE1:Hg19::chr1:235813290..235813323,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
No edit summary |
No edit summary |
||
Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=2786 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=4407 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=P50150,B1APZ0 | ||
|association_with_transcript=0bp_to_ENST00000391854,NM_001098722,uc001hxe.3_5end | |association_with_transcript=0bp_to_ENST00000391854,NM_001098722,uc001hxe.3_5end | ||
|cluster_id=chr1:235813290..235813323,- | |cluster_id=chr1:235813290..235813323,- |
Latest revision as of 12:47, 16 September 2015
Short description: | p2@GNG4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GNG4_5end |
Coexpression cluster: | C1472_nonsmall_neuroblastoma_small_tubular_carcinoid_smallcell_merkel |
Association with transcript: | 0bp_to_ENST00000391854, NM_001098722, uc001hxe.3_5end |
EntrezGene: | GNG4 |
HGNC: | 4407 |
UniProt: | P50150B1APZ0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p2@GNG4 |
---|
0
5
10
15
20
25
30
35
40
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 2.87e-13 | 8 |
neural cell | 5.19e-13 | 25 |
neuron | 8.35e-11 | 6 |
neuroblast | 8.35e-11 | 6 |
electrically signaling cell | 8.35e-11 | 6 |
neurectodermal cell | 6.54e-09 | 59 |
embryonic stem cell | 2.48e-08 | 5 |
Showing 1 to 7 of 7 entries
Ontology term | p-value | n |
---|---|---|
nervous system | 9.46e-26 | 89 |
central nervous system | 2.78e-22 | 81 |
organ system subdivision | 1.87e-16 | 223 |
neural tube | 2.58e-14 | 56 |
neural rod | 2.58e-14 | 56 |
future spinal cord | 2.58e-14 | 56 |
neural keel | 2.58e-14 | 56 |
brain | 2.98e-14 | 68 |
future brain | 2.98e-14 | 68 |
regional part of nervous system | 3.04e-14 | 53 |
Showing 1 to 10 of 30 entries
Ontology term | p-value | n |
---|---|---|
cell type cancer | 8.60e-13 | 143 |
neuroectodermal tumor | 5.29e-10 | 10 |
cancer | 2.13e-08 | 235 |
germ cell and embryonal cancer | 2.73e-08 | 22 |
germ cell cancer | 2.73e-08 | 22 |
disease of cellular proliferation | 6.40e-08 | 239 |
neuroendocrine tumor | 6.93e-08 | 6 |
carcinoma | 2.68e-07 | 106 |
Showing 1 to 8 of 8 entries