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MCL coexpression mm9:1507: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000838!1.61e-07!12;CL:0000084!6.21e-07!11;CL:0000827!6.21e-07!11
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001041!8.48e-11!80;UBERON:0000926!8.96e-10!120;UBERON:0004120!8.96e-10!120;UBERON:0006603!8.96e-10!120;UBERON:0001004!4.57e-09!42;UBERON:0000077!5.19e-09!35;UBERON:0000065!6.87e-09!41;UBERON:0004177!8.92e-09!29;UBERON:0005057!8.92e-09!29;UBERON:0002193!1.64e-08!48;UBERON:0002405!1.64e-08!48;UBERON:0002390!2.12e-08!45;UBERON:0003061!2.12e-08!45;UBERON:0001048!2.19e-08!134;UBERON:0000475!4.08e-08!150;UBERON:0003081!1.57e-07!87;UBERON:0004921!2.13e-07!114;UBERON:0004119!2.44e-07!118;UBERON:0000925!2.44e-07!118;UBERON:0006595!2.44e-07!118;UBERON:0006562!2.61e-07!24;UBERON:0001557!2.61e-07!24;UBERON:0001042!2.61e-07!24;UBERON:0008814!2.61e-07!24;UBERON:0009145!2.61e-07!24;UBERON:0001007!3.11e-07!116;UBERON:0001555!3.11e-07!116;UBERON:0007026!3.11e-07!116;UBERON:0003408!3.36e-07!24;UBERON:0002370!4.81e-07!23;UBERON:0000974!4.81e-07!23;UBERON:0004807!4.81e-07!23;UBERON:0005058!4.81e-07!23;UBERON:0003351!4.81e-07!23;UBERON:0009113!4.81e-07!23;UBERON:0003295!4.81e-07!23;UBERON:0009722!4.81e-07!23;UBERON:0005562!4.81e-07!23;UBERON:0007690!4.81e-07!23
}}
}}

Revision as of 17:00, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:34138271..34138373,-p1@Nt5dc1
Mm9::chr17:21587325..21587361,+p1@Zfp51
Mm9::chr19:42593285..42593320,+p1@D19Ertd386e
Mm9::chr2:34965002..34965058,+p1@Cep110
Mm9::chr4:108952871..108952920,+p2@Eps15


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
lymphoid lineage restricted progenitor cell1.61e-0712
T cell6.21e-0711
pro-T cell6.21e-0711

Uber Anatomy
Ontology termp-valuen
foregut8.48e-1180
mesoderm8.96e-10120
mesoderm-derived structure8.96e-10120
presumptive mesoderm8.96e-10120
respiratory system4.57e-0942
mixed endoderm/mesoderm-derived structure5.19e-0935
respiratory tract6.87e-0941
hemopoietic organ8.92e-0929
immune organ8.92e-0929
hemolymphoid system1.64e-0848
immune system1.64e-0848
hematopoietic system2.12e-0845
blood island2.12e-0845
primordium2.19e-08134
organism subdivision4.08e-08150
lateral plate mesoderm1.57e-0787
subdivision of digestive tract2.13e-07114
endoderm-derived structure2.44e-07118
endoderm2.44e-07118
presumptive endoderm2.44e-07118
pharynx2.61e-0724
upper respiratory tract2.61e-0724
chordate pharynx2.61e-0724
pharyngeal arch system2.61e-0724
pharyngeal region of foregut2.61e-0724
digestive system3.11e-07116
digestive tract3.11e-07116
primitive gut3.11e-07116
gland of gut3.36e-0724
thymus4.81e-0723
neck4.81e-0723
respiratory system epithelium4.81e-0723
hemolymphoid system gland4.81e-0723
pharyngeal epithelium4.81e-0723
thymic region4.81e-0723
pharyngeal gland4.81e-0723
entire pharyngeal arch endoderm4.81e-0723
thymus primordium4.81e-0723
early pharyngeal endoderm4.81e-0723


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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