Personal tools

MCL coexpression mm9:2207: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
← Older editNewer edit →
No edit summary
No edit summary
Line 3: Line 3:
|coexpression_dpi_cluster_scores_median=0.0579278641839855,-0.0623393990346814,-0.159913714068546,-0.113628313662676,0.039051233373565,0.0222685463609048,0.298785557732277,0.497697639292565,0.847101355108902,0.706998237908523,0.549273456780906,0.370815499138874,0.623625173138522,0.499976796968225,0.228243645120906,0.319499194036221,0.346850147943726,0.548966659456872,0.445276971855228,0.54766477086255,-0.214754152602358,0.445005157555834,0.511113739640414,0.258420853823521,0.235683515680984,0.110952606172276,0.0493294808862001,-0.00292401056612385,0.233964810978181,-0.125867173925377,-0.025555206637992,0.372236219924199,-0.0553678947600071,-0.365601683895903,0.309596797701501,0.271256877564162,0.240481138760926,-0.0601628134673683,-0.0154907970923027,-0.267082480420249,-0.164687881870554,-0.252553757340096,-0.208622843061432,0.0607772331679654,0.110304562564217,0.181058747074079,0.544106831157137,-0.233223919953183,-0.0437070083254105,-0.157396088858328,0.0644457226742037,0.0555332124387168,0.465341496250044,0.753376215891141,0.717459868648262,0.46117615919361,0.391345163164841,0.305410389876587,0.0024351966826412,0.175018276592079,-0.0265076219205387,0.351233934981508,0.232643837163909,0.237462163057812,0.392721542387723,0.497568710706144,0.267422272720473,0.286378465734286,-0.0277329193814213,0.138734377393975,0.252399061534544,0.0046070901450211,0.0185522841526371,0.130358358522507,-0.0619204970881185,-0.0697537454253183,-0.365601683895903,-0.288466478197302,-0.300415372993511,-0.00405300666964845,-0.151206461531765,0.0140672558200309,-0.23885376915114,-0.154883361539344,-0.197682492066373,-0.0515749983182199,-0.115475339439596,-0.0212817836974232,0.101090415080518,0.176709423747527,0.155394565061807,0.0781132792953015,0.102006232027729,-0.0752588139995075,-0.159484032048181,-0.124869571120968,-0.101763095163487,0.109955727119163,0.480000822670728,0.270320874521457,-0.0339434321802145,0.180734910113069,-0.090606671496892,0.343919210628525,0.385911072455668,0.298834564911617,0.16223791506425,-0.114027709952575,0.0393115709112389,-0.188037076870623,0.123620650630238,-0.00586376685937955,-0.057142973177264,-0.0261331364988686,-0.0939235802701378,-0.219934505386784,-0.108250290772161,-0.265999620207357,0.0844745622883153,-0.171338827316751,-0.155995701744012,0.0536307501818542,0.0349514943687068,-0.509374915749565,-0.390710183201244,-0.0918344904398936,0.318531392574744,0.218374710260934,0.438454375078694,-0.363782016829777,-0.287860796745385,-0.0691657568012291,-0.409216903968172,-0.367461994620049,-0.294687791546632,-0.456531636270016,0.0402199741141534,-0.0524690143464749,0.121898583891165,-0.274504474494144,0.0785204195534395,0.152550300127072,0.0273940811609061,0.0773962131141187,-0.221341915519407,-0.243443410835858,-0.161579372824446,-0.342834803679561,-0.00816523034910817,-0.0437352228774543,0.0305864093231341,0.0773923185243119,0.0509876782855485,0.0548746548100038,0.0253692148779754,0.137256849351895,-0.0365785819863437,0.0129700923376583,0.320218387099721,-0.0764877231695315,-0.00611684665470135,0.0212954191657241,-0.0336096222920629,-3.20319080115983e-05,-0.0166466693933429,-0.0800138225580729,-0.0839977818846172,-0.110883886353809,-0.170352953636371,-0.146560941868911,-0.264467032247109,-0.119649832754001,-0.137995079554852,-0.0768854844036229,-0.311683219900919,-0.184218428350741,-0.291348728610086,-0.099725548222971,0.0580771381271045,0.0502339553527667,0.0122572084691487,-0.0320249243787138,-0.0588614685159859,0.0005982774502611,0.0736610358648199,-0.0338538765435979,-0.0530819337038223,0.146332757953233,-0.0433891091845165,-0.140502565230607,-0.0534362633347415,-0.00533842749734994,0.167436438209862,0.0745890383338314,0.0545090567824976,-0.0475937596712401,0.0858480062528704,-0.0377728080044476,-0.225742717783719,-0.262863466239596,-0.158194779130145,-0.155191994871726,-0.26482458503446,-0.0388700382469574,-0.0126833433862889,-0.038383675502233,0.0416601374469625,0.0513214723330123,0.120740778923123,0.0311600462639595,0.08821770756566,0.0067336789160434,-0.365601683895903,-0.0642845452471553,0.0068146031411978,-0.085163734603829,-0.167470830005461,-0.217160728382252,-0.0519464627541137,0.132594937352128,-0.0228789045571985,0.053029003088959,0.0318450829991928,0.0476906365888615,0.0135842086933697,-0.0937121644826247,-0.24057336693255,-0.0448879951236982,-0.134257009527746,-0.109239109493351,-0.116407331180798,-0.0326913450872888,0.454734626803442,0.150208947965689,-0.0737682672267732,-0.077950941722646,-0.386311598813428,-0.400402216748078,0.537208779779965,-0.154116619456064,0.264764679186605,0.191844486478878,0.0701452988130691,0.139995044551542,0.170964405057536,0.00802538219387815,0.211215076366683,0.0823715651264071,-0.0576599720454974,-0.385667152209956,-0.0993247749347784,0.178779948944956,0.041627195351535,-0.14689100720702,-0.014136270384662,0.130305669715848,0.200484697897257,0.186716198122371,0.154700034773273,0.19516301015374,0.0239800361238449,0.106334113836315,0.155040244039403,0.167367461929998,0.267761385236533,0.354425841121448,-0.140065177868989,0.0923686523417147,0.104938150818246,-0.0070732627851622,-0.0857955179268096,0.00396143106791315,0.104575685890094,0.154466342475872,-0.0949205325668192,-0.125504872756764,-0.0685485344239311,0.0105944204266493,-0.0521195796571507,-0.171999593911353,0.0689150218570721,0.0061387919380198,-0.169046908176826,-0.400599001190141,0.105440788446575,0.146498148158254,-0.043497658659946,0.0165819168439611,0.0070674084191977,0.103098818248085,0.193212295643701,0.170013443082218,0.155897808372817,0.0224927749366174,-0.0468507081088102,0.056624261978839,0.0396636655063698,0.0842219123001038,0.165234637826404,-0.0808162735589582,-0.114712725476946,0.0208087902295086,-0.052668978225621,-0.166353188830575,-0.0360227362171612,-0.0139391983489735,0.142813725888893,-0.0298014714190712,0.182921446523962,0.141250388349547,0.0479715023879947,-0.0600261519526055,-0.158448077546345,-0.331329858507534,-0.175405253090662,-0.158845037740249,0.1032967511945,0.197647426642817,0.230586047382782,0.136163903524677,0.0925906084256545,0.0668251496284245,0.119281190947969,-0.0261263206303584,-0.00854399584360135,0.00584441281153695,-0.0392236798216373,0.0223533584281397,0.0232145978575818,-0.131484279430736,0.141200658446882,0.218519183942267,0.0864338756247518,-0.0439292916534274,-0.0446789698197595,0.00104235033021524,0.0259596897771659,0.14486302993122,-0.289751205255786,-0.264048047662783,-0.101458034645651,-0.257683649011984,-0.223316992618827,-0.0845303508701156,-0.113788941531038,-0.228356304642091,-0.365601683895903,-0.301354527030822,0.132441775532814,-0.208687161698688,0.0804909829719064,-0.149707319737824,0.0978999149996158,0.131726601823642,-0.0632373072249609,-0.0780234224095527,-0.160622141437748,0.0220278203748691,-0.0789150369061204,-0.0509017974229514,0.033999952265031,-0.147600871267923,-0.100672112780118,-0.00119348374809905,-0.0679828885030543,-0.0969922571097581,-0.0401334852054613,-0.0286197992540438,0.0701182451464147,0.0170184734246608,-0.0540172765510672,0.0345603165413255,-0.036299423129907,-0.0737942669182594,-0.025838397467956,-0.0697398045017789,-0.0339970021619199,-0.0816512387828231,-0.155834904347399,-0.0502587652302221,-0.221397960323989,-0.0110147293078264,0.0528934871967492,0.0928918745334786,-0.0780126119275872,-0.11718584007567,-0.0427037358560164,-0.118826102491281,-0.00947323700849405
|coexpression_dpi_cluster_scores_median=0.0579278641839855,-0.0623393990346814,-0.159913714068546,-0.113628313662676,0.039051233373565,0.0222685463609048,0.298785557732277,0.497697639292565,0.847101355108902,0.706998237908523,0.549273456780906,0.370815499138874,0.623625173138522,0.499976796968225,0.228243645120906,0.319499194036221,0.346850147943726,0.548966659456872,0.445276971855228,0.54766477086255,-0.214754152602358,0.445005157555834,0.511113739640414,0.258420853823521,0.235683515680984,0.110952606172276,0.0493294808862001,-0.00292401056612385,0.233964810978181,-0.125867173925377,-0.025555206637992,0.372236219924199,-0.0553678947600071,-0.365601683895903,0.309596797701501,0.271256877564162,0.240481138760926,-0.0601628134673683,-0.0154907970923027,-0.267082480420249,-0.164687881870554,-0.252553757340096,-0.208622843061432,0.0607772331679654,0.110304562564217,0.181058747074079,0.544106831157137,-0.233223919953183,-0.0437070083254105,-0.157396088858328,0.0644457226742037,0.0555332124387168,0.465341496250044,0.753376215891141,0.717459868648262,0.46117615919361,0.391345163164841,0.305410389876587,0.0024351966826412,0.175018276592079,-0.0265076219205387,0.351233934981508,0.232643837163909,0.237462163057812,0.392721542387723,0.497568710706144,0.267422272720473,0.286378465734286,-0.0277329193814213,0.138734377393975,0.252399061534544,0.0046070901450211,0.0185522841526371,0.130358358522507,-0.0619204970881185,-0.0697537454253183,-0.365601683895903,-0.288466478197302,-0.300415372993511,-0.00405300666964845,-0.151206461531765,0.0140672558200309,-0.23885376915114,-0.154883361539344,-0.197682492066373,-0.0515749983182199,-0.115475339439596,-0.0212817836974232,0.101090415080518,0.176709423747527,0.155394565061807,0.0781132792953015,0.102006232027729,-0.0752588139995075,-0.159484032048181,-0.124869571120968,-0.101763095163487,0.109955727119163,0.480000822670728,0.270320874521457,-0.0339434321802145,0.180734910113069,-0.090606671496892,0.343919210628525,0.385911072455668,0.298834564911617,0.16223791506425,-0.114027709952575,0.0393115709112389,-0.188037076870623,0.123620650630238,-0.00586376685937955,-0.057142973177264,-0.0261331364988686,-0.0939235802701378,-0.219934505386784,-0.108250290772161,-0.265999620207357,0.0844745622883153,-0.171338827316751,-0.155995701744012,0.0536307501818542,0.0349514943687068,-0.509374915749565,-0.390710183201244,-0.0918344904398936,0.318531392574744,0.218374710260934,0.438454375078694,-0.363782016829777,-0.287860796745385,-0.0691657568012291,-0.409216903968172,-0.367461994620049,-0.294687791546632,-0.456531636270016,0.0402199741141534,-0.0524690143464749,0.121898583891165,-0.274504474494144,0.0785204195534395,0.152550300127072,0.0273940811609061,0.0773962131141187,-0.221341915519407,-0.243443410835858,-0.161579372824446,-0.342834803679561,-0.00816523034910817,-0.0437352228774543,0.0305864093231341,0.0773923185243119,0.0509876782855485,0.0548746548100038,0.0253692148779754,0.137256849351895,-0.0365785819863437,0.0129700923376583,0.320218387099721,-0.0764877231695315,-0.00611684665470135,0.0212954191657241,-0.0336096222920629,-3.20319080115983e-05,-0.0166466693933429,-0.0800138225580729,-0.0839977818846172,-0.110883886353809,-0.170352953636371,-0.146560941868911,-0.264467032247109,-0.119649832754001,-0.137995079554852,-0.0768854844036229,-0.311683219900919,-0.184218428350741,-0.291348728610086,-0.099725548222971,0.0580771381271045,0.0502339553527667,0.0122572084691487,-0.0320249243787138,-0.0588614685159859,0.0005982774502611,0.0736610358648199,-0.0338538765435979,-0.0530819337038223,0.146332757953233,-0.0433891091845165,-0.140502565230607,-0.0534362633347415,-0.00533842749734994,0.167436438209862,0.0745890383338314,0.0545090567824976,-0.0475937596712401,0.0858480062528704,-0.0377728080044476,-0.225742717783719,-0.262863466239596,-0.158194779130145,-0.155191994871726,-0.26482458503446,-0.0388700382469574,-0.0126833433862889,-0.038383675502233,0.0416601374469625,0.0513214723330123,0.120740778923123,0.0311600462639595,0.08821770756566,0.0067336789160434,-0.365601683895903,-0.0642845452471553,0.0068146031411978,-0.085163734603829,-0.167470830005461,-0.217160728382252,-0.0519464627541137,0.132594937352128,-0.0228789045571985,0.053029003088959,0.0318450829991928,0.0476906365888615,0.0135842086933697,-0.0937121644826247,-0.24057336693255,-0.0448879951236982,-0.134257009527746,-0.109239109493351,-0.116407331180798,-0.0326913450872888,0.454734626803442,0.150208947965689,-0.0737682672267732,-0.077950941722646,-0.386311598813428,-0.400402216748078,0.537208779779965,-0.154116619456064,0.264764679186605,0.191844486478878,0.0701452988130691,0.139995044551542,0.170964405057536,0.00802538219387815,0.211215076366683,0.0823715651264071,-0.0576599720454974,-0.385667152209956,-0.0993247749347784,0.178779948944956,0.041627195351535,-0.14689100720702,-0.014136270384662,0.130305669715848,0.200484697897257,0.186716198122371,0.154700034773273,0.19516301015374,0.0239800361238449,0.106334113836315,0.155040244039403,0.167367461929998,0.267761385236533,0.354425841121448,-0.140065177868989,0.0923686523417147,0.104938150818246,-0.0070732627851622,-0.0857955179268096,0.00396143106791315,0.104575685890094,0.154466342475872,-0.0949205325668192,-0.125504872756764,-0.0685485344239311,0.0105944204266493,-0.0521195796571507,-0.171999593911353,0.0689150218570721,0.0061387919380198,-0.169046908176826,-0.400599001190141,0.105440788446575,0.146498148158254,-0.043497658659946,0.0165819168439611,0.0070674084191977,0.103098818248085,0.193212295643701,0.170013443082218,0.155897808372817,0.0224927749366174,-0.0468507081088102,0.056624261978839,0.0396636655063698,0.0842219123001038,0.165234637826404,-0.0808162735589582,-0.114712725476946,0.0208087902295086,-0.052668978225621,-0.166353188830575,-0.0360227362171612,-0.0139391983489735,0.142813725888893,-0.0298014714190712,0.182921446523962,0.141250388349547,0.0479715023879947,-0.0600261519526055,-0.158448077546345,-0.331329858507534,-0.175405253090662,-0.158845037740249,0.1032967511945,0.197647426642817,0.230586047382782,0.136163903524677,0.0925906084256545,0.0668251496284245,0.119281190947969,-0.0261263206303584,-0.00854399584360135,0.00584441281153695,-0.0392236798216373,0.0223533584281397,0.0232145978575818,-0.131484279430736,0.141200658446882,0.218519183942267,0.0864338756247518,-0.0439292916534274,-0.0446789698197595,0.00104235033021524,0.0259596897771659,0.14486302993122,-0.289751205255786,-0.264048047662783,-0.101458034645651,-0.257683649011984,-0.223316992618827,-0.0845303508701156,-0.113788941531038,-0.228356304642091,-0.365601683895903,-0.301354527030822,0.132441775532814,-0.208687161698688,0.0804909829719064,-0.149707319737824,0.0978999149996158,0.131726601823642,-0.0632373072249609,-0.0780234224095527,-0.160622141437748,0.0220278203748691,-0.0789150369061204,-0.0509017974229514,0.033999952265031,-0.147600871267923,-0.100672112780118,-0.00119348374809905,-0.0679828885030543,-0.0969922571097581,-0.0401334852054613,-0.0286197992540438,0.0701182451464147,0.0170184734246608,-0.0540172765510672,0.0345603165413255,-0.036299423129907,-0.0737942669182594,-0.025838397467956,-0.0697398045017789,-0.0339970021619199,-0.0816512387828231,-0.155834904347399,-0.0502587652302221,-0.221397960323989,-0.0110147293078264,0.0528934871967492,0.0928918745334786,-0.0780126119275872,-0.11718584007567,-0.0427037358560164,-0.118826102491281,-0.00947323700849405
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000548!6.08e-16!115;CL:0000255!6.08e-16!115;CL:0002320!1.26e-15!46;CL:0000134!1.26e-15!46;CL:0002371!6.46e-15!118;CL:0000034!9.99e-15!97;CL:0000219!1.07e-14!54;CL:0000988!1.18e-13!32;CL:0002032!1.18e-13!32;CL:0000037!1.18e-13!32;CL:0000566!1.18e-13!32;CL:0000837!1.18e-13!32;CL:0000723!8.35e-13!91;CL:0000048!8.35e-13!91;CL:0002031!1.94e-12!25;CL:0000738!1.01e-10!17;CL:0002087!1.01e-10!17;CL:0000838!3.50e-09!12;CL:0000542!5.20e-09!13;CL:0000051!5.20e-09!13;CL:0000084!1.40e-08!11;CL:0000827!1.40e-08!11;CL:0000791!2.25e-07!9;CL:0000789!2.25e-07!9;CL:0002420!2.25e-07!9;CL:0002419!2.25e-07!9;CL:0000790!2.25e-07!9;CL:0002242!2.58e-07!16
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002384!1.26e-15!46;UBERON:0002193!1.84e-11!48;UBERON:0002405!1.84e-11!48;UBERON:0002390!1.28e-10!45;UBERON:0003061!1.28e-10!45;UBERON:0002371!1.16e-07!16
}}
}}

Revision as of 18:05, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr17:3462365..3462373,-p@chr17:3462365..3462373
-
Mm9::chr18:60939103..60939106,-p1@ENSMUST00000118088
Mm9::chr2:152179275..152179280,+p1@ENSMUST00000121456
Mm9::chr5:129634438..129634450,-p1@ENSMUST00000076708


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
animal cell6.08e-16115
eukaryotic cell6.08e-16115
connective tissue cell1.26e-1546
mesenchymal cell1.26e-1546
somatic cell6.46e-15118
stem cell9.99e-1597
motile cell1.07e-1454
hematopoietic cell1.18e-1332
hematopoietic oligopotent progenitor cell1.18e-1332
hematopoietic stem cell1.18e-1332
angioblastic mesenchymal cell1.18e-1332
hematopoietic multipotent progenitor cell1.18e-1332
somatic stem cell8.35e-1391
multi fate stem cell8.35e-1391
hematopoietic lineage restricted progenitor cell1.94e-1225
leukocyte1.01e-1017
nongranular leukocyte1.01e-1017
lymphoid lineage restricted progenitor cell3.50e-0912
lymphocyte5.20e-0913
common lymphoid progenitor5.20e-0913
T cell1.40e-0811
pro-T cell1.40e-0811
mature alpha-beta T cell2.25e-079
alpha-beta T cell2.25e-079
immature T cell2.25e-079
mature T cell2.25e-079
immature alpha-beta T cell2.25e-079
nucleate cell2.58e-0716

Uber Anatomy
Ontology termp-valuen
connective tissue1.26e-1546
hemolymphoid system1.84e-1148
immune system1.84e-1148
hematopoietic system1.28e-1045
blood island1.28e-1045
bone marrow1.16e-0716


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:2207&oldid=2154408"