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MCL coexpression mm9:3649: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004119!6.98e-22!118;UBERON:0000925!6.98e-22!118;UBERON:0006595!6.98e-22!118;UBERON:0001007!1.44e-21!116;UBERON:0001555!1.44e-21!116;UBERON:0007026!1.44e-21!116;UBERON:0004921!5.27e-21!114;UBERON:0005177!1.90e-17!79;UBERON:0000466!6.47e-16!79;UBERON:0002100!4.40e-14!90;UBERON:0002365!4.11e-12!25;UBERON:0002330!4.11e-12!25;UBERON:0009569!1.08e-11!66;UBERON:0009854!2.27e-11!23;UBERON:0009856!2.27e-11!23;UBERON:0001041!4.17e-11!80;UBERON:0002107!8.09e-11!22;UBERON:0007499!8.09e-11!22;UBERON:0006925!8.09e-11!22;UBERON:0009497!8.09e-11!22;UBERON:0000015!8.09e-11!22;UBERON:0002423!8.09e-11!22;UBERON:0006235!8.09e-11!22;UBERON:0008835!8.09e-11!22;UBERON:0003894!8.09e-11!22;UBERON:0004161!8.09e-11!22;UBERON:0008836!8.09e-11!22;UBERON:0005911!1.38e-10!69;UBERON:0005409!1.01e-08!47;UBERON:0005153!6.06e-08!17;UBERON:0000160!1.13e-07!31;UBERON:0005178!1.22e-07!17;UBERON:0005181!1.22e-07!17;UBERON:0002224!1.22e-07!17;UBERON:0000915!1.22e-07!17;UBERON:0008947!1.22e-07!17;UBERON:0003258!1.22e-07!17;UBERON:0000475!2.33e-07!150;UBERON:0000464!4.36e-07!57;UBERON:0002048!8.23e-07!14;UBERON:0000117!8.23e-07!14;UBERON:0000171!8.23e-07!14;UBERON:0000170!8.23e-07!14;UBERON:0005597!8.23e-07!14;UBERON:0000118!8.23e-07!14
}}
}}

Revision as of 20:24, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr8:108660692..108660776,-p1@Esrp2
Mm9::chr8:108660790..108660801,-p2@Esrp2
Mm9::chr8:108660958..108660974,+p1@ENSMUST00000145343
p1@uc009nfh.1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
endoderm-derived structure6.98e-22118
endoderm6.98e-22118
presumptive endoderm6.98e-22118
digestive system1.44e-21116
digestive tract1.44e-21116
primitive gut1.44e-21116
subdivision of digestive tract5.27e-21114
trunk region element1.90e-1779
immaterial anatomical entity6.47e-1679
trunk4.40e-1490
exocrine gland4.11e-1225
exocrine system4.11e-1225
subdivision of trunk1.08e-1166
digestive tract diverticulum2.27e-1123
sac2.27e-1123
foregut4.17e-1180
liver8.09e-1122
epithelial sac8.09e-1122
digestive gland8.09e-1122
epithelium of foregut-midgut junction8.09e-1122
anatomical boundary8.09e-1122
hepatobiliary system8.09e-1122
foregut-midgut junction8.09e-1122
hepatic diverticulum8.09e-1122
liver primordium8.09e-1122
septum transversum8.09e-1122
liver bud8.09e-1122
endo-epithelium1.38e-1069
gastrointestinal system1.01e-0847
epithelial bud6.06e-0817
intestine1.13e-0731
thoracic cavity element1.22e-0717
thoracic segment organ1.22e-0717
thoracic cavity1.22e-0717
thoracic segment of trunk1.22e-0717
respiratory primordium1.22e-0717
endoderm of foregut1.22e-0717
organism subdivision2.33e-07150
anatomical space4.36e-0757
lung8.23e-0714
respiratory tube8.23e-0714
respiration organ8.23e-0714
pair of lungs8.23e-0714
lung primordium8.23e-0714
lung bud8.23e-0714


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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