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Coexpression cluster:C103: Difference between revisions

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|tfbs_overrepresentation_for_novel_motifs=0.00798229,1.97796e-06,0.00662001,1.33038,0.10018,0.856766,0.0268873,0.070195,0.0939808,5.55314e-07,0.0128446,0.641786,0.000277756,0.0229214,1.46701,0.0973995,0.101773,0.467363,3.50359e-05,0.00278601,1.14042,0.00252295,0.00700295,0.579912,0.00822141,0.0225913,0.409229,0.0183813,0.00535864,0.0390645,0.00840915,0.0477021,0.0187965,0.0252064,0.00157382,1.66734e-07,4.17357e-05,0.0220703,1.0853,4.7349e-07,2.31364,0.0059625,0.0884724,1.66446,9.6796e-07,0.000127419,0.00919943,0.0250365,1.76946,0.00537875,0.0267993,0.522018,0.0970769,0.0832313,0.747753,0.0562156,1.58306,0.000951967,0.0264669,0.0749825,0.0650977,0.00221906,0.0443759,0.0819633,0.0124584,0.900499,0.581784,0.766921,0.255798,0.528052,5.09583e-05,2.34761,3.54834e-10,0.423048,7.04613e-09,1.12343e-06,0.00172383,0.978747,0.436669,2.08219,2.18023,0.0267755,1.53977,2.06282,0.0375031,0,0.0988019,0.00862203,0.0359059,0.351225,0.120282,0.128327,1.0952,3.73537,0.000706415,2.68861,0.0350113,0.619615,0.484678,0.00339183,0.94106,0.28977,0.0712838,0.22235,0.401433,0.00107868,0.00569437,0.423293,0.0081746,0.000107352,0.00876929,1.2465,0.738704,0.195352,0.669148,1.36815,4.32493e-07,0.41725,0.0597147,0.413938,0.182877,0.668751,0.486484,0.419649,1.44546,0.0716376,0.309095,0.0115817,0.480833,0.870826,0.883759,0.0830925,0.86856,0.268826,0.39791,0.0675689,1.07753,0.221362,0.706026,0.731567,0.390881,0.305042,1.95535,0.912101,0.0557656,0.0682564,0.113028,0.590533,0.781435,1.72496e-05,0.000331576,0,1.27481,0.000862668,0.214278,0.196177,1.4151,0.23365,0.620471,0.00140195,0.629863,1.62959,0.119722,0.0231043,0.928452,0.749378,0.0143183,1.36841,0
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|tfbs_overrepresentation_jaspar=MA0003.1;0,MA0004.1;0.115255,MA0006.1;0.00463331,MA0007.1;0.0238329,MA0009.1;0.469569,MA0014.1;0,MA0017.1;0.0816364,MA0019.1;0.662815,MA0024.1;0.00967451,MA0025.1;2.80033,MA0027.1;1.18663,MA0028.1;0.0155979,MA0029.1;1.49084,MA0030.1;1.83557,MA0031.1;2.24272,MA0038.1;0.125006,MA0040.1;0.537389,MA0041.1;2.78157,MA0042.1;3.76888,MA0043.1;0.470226,MA0046.1;1.90902,MA0048.1;5.6674e-06,MA0050.1;3.40238,MA0051.1;0.0612526,MA0052.1;0.547325,MA0055.1;5.55648e-07,MA0056.1;0,MA0057.1;3.05385e-08,MA0058.1;0.187381,MA0059.1;0.00153871,MA0060.1;0.0949256,MA0061.1;0.000117082,MA0063.1;0,MA0066.1;0.0095068,MA0067.1;0.128107,MA0068.1;0.253554,MA0069.1;0.0926088,MA0070.1;0.682474,MA0071.1;1.37521,MA0072.1;3.33774,MA0073.1;0,MA0074.1;0.0606976,MA0076.1;0.0327651,MA0077.1;0.648141,MA0078.1;1.16338,MA0081.1;0.0440924,MA0083.1;1.13782,MA0084.1;0.233716,MA0087.1;1.3573,MA0088.1;9.81078e-07,MA0089.1;0,MA0090.1;0.00950933,MA0091.1;1.37943,MA0092.1;0.119505,MA0093.1;0.0654948,MA0095.1;0,MA0098.1;0,MA0100.1;0.0756426,MA0101.1;0.00228562,MA0103.1;0.326513,MA0105.1;2.90182e-10,MA0106.1;0.458092,MA0107.1;0.00237713,MA0108.2;1.42662,MA0109.1;0,MA0111.1;0.228426,MA0113.1;0.345611,MA0114.1;0.00193781,MA0115.1;0.645111,MA0116.1;0.000438167,MA0117.1;0.550635,MA0119.1;0.00733647,MA0122.1;0.609693,MA0124.1;0.267741,MA0125.1;0.418484,MA0130.1;0,MA0131.1;0.0117207,MA0132.1;0,MA0133.1;0,MA0135.1;4.53519,MA0136.1;1.76168,MA0139.1;3.73099e-07,MA0140.1;1.35387,MA0141.1;0.602919,MA0142.1;0.0679538,MA0143.1;0.956103,MA0144.1;0.0294135,MA0145.1;3.4738e-08,MA0146.1;1.36935e-14,MA0147.1;1.21295e-05,MA0148.1;1.0761,MA0149.1;0.069045,MA0062.2;0.00224805,MA0035.2;6.65036,MA0039.2;0,MA0138.2;0.00139046,MA0002.2;2.31324,MA0137.2;0.628184,MA0104.2;5.26944e-08,MA0047.2;1.62812,MA0112.2;0.0016832,MA0065.2;0.000134438,MA0150.1;0.969353,MA0151.1;0,MA0152.1;0.698094,MA0153.1;0.693865,MA0154.1;9.49561e-06,MA0155.1;0.000167293,MA0156.1;0.962165,MA0157.1;3.05541,MA0158.1;0,MA0159.1;0.327592,MA0160.1;0.955427,MA0161.1;0,MA0162.1;0,MA0163.1;0,MA0164.1;0.133723,MA0080.2;1.50216,MA0018.2;0.876079,MA0099.2;0.151845,MA0079.2;0,MA0102.2;0.257943,MA0258.1;0.11669,MA0259.1;7.52314e-05,MA0442.1;0
}}
}}

Revision as of 18:21, 22 January 2013


Full id: C103_CD4_CD8_Natural_Peripheral_Whole_Neutrophils_Basophils



Phase1 CAGE Peaks

Hg19::chr10:116561109..116561139,-p@chr10:116561109..116561139
-
Hg19::chr10:116561206..116561217,-p@chr10:116561206..116561217
-
Hg19::chr10:120850774..120850786,+p@chr10:120850774..120850786
+
Hg19::chr10:127684545..127684563,+p@chr10:127684545..127684563
+
Hg19::chr10:127684574..127684597,+p@chr10:127684574..127684597
+
Hg19::chr10:127684603..127684610,+p@chr10:127684603..127684610
+
Hg19::chr10:127684797..127684804,+p@chr10:127684797..127684804
+
Hg19::chr10:17697543..17697546,-p@chr10:17697543..17697546
-
Hg19::chr10:17755334..17755338,+p@chr10:17755334..17755338
+
Hg19::chr10:33403410..33403417,-p@chr10:33403410..33403417
-
Hg19::chr10:33403568..33403605,+p@chr10:33403568..33403605
+
Hg19::chr10:33405656..33405667,-p3@ENST00000414308
Hg19::chr10:33405703..33405713,-p2@ENST00000414308
Hg19::chr10:33405727..33405751,-p1@ENST00000414308
Hg19::chr10:33423233..33423255,+p@chr10:33423233..33423255
+
Hg19::chr10:33428350..33428361,+p@chr10:33428350..33428361
+
Hg19::chr10:6337053..6337076,+p@chr10:6337053..6337076
+
Hg19::chr10:6342353..6342370,+p@chr10:6342353..6342370
+
Hg19::chr10:63807238..63807249,+p@chr10:63807238..63807249
+
Hg19::chr10:63810303..63810331,+p@chr10:63810303..63810331
+
Hg19::chr10:63810855..63810875,-p@chr10:63810855..63810875
-
Hg19::chr10:63810885..63810913,-p@chr10:63810885..63810913
-
Hg19::chr10:63978845..63978868,+p@chr10:63978845..63978868
+
Hg19::chr10:63978876..63978886,+p@chr10:63978876..63978886
+
Hg19::chr10:63995871..63995888,-p4@RTKN2
Hg19::chr10:63996620..63996627,-p@chr10:63996620..63996627
-
Hg19::chr10:63999878..63999893,-p@chr10:63999878..63999893
-
Hg19::chr10:63999898..63999909,-p@chr10:63999898..63999909
-
Hg19::chr11:111410267..111410269,+p@chr11:111410267..111410269
+
Hg19::chr11:117150937..117150942,+p@chr11:117150937..117150942
+
Hg19::chr11:117150945..117150958,+p@chr11:117150945..117150958
+
Hg19::chr11:121322289..121322304,+p@chr11:121322289..121322304
+
Hg19::chr11:121322360..121322393,+p@chr11:121322360..121322393
+
Hg19::chr11:121322394..121322417,+p12@SORL1
Hg19::chr12:12619140..12619146,-p1@CU680647
Hg19::chr12:12619407..12619418,+p@chr12:12619407..12619418
+
Hg19::chr12:12628211..12628227,+p@chr12:12628211..12628227
+
Hg19::chr12:12628251..12628264,+p@chr12:12628251..12628264
+
Hg19::chr12:12635181..12635187,-p@chr12:12635181..12635187
-
Hg19::chr12:12635397..12635432,+p@chr12:12635397..12635432
+
Hg19::chr12:12635434..12635452,+p@chr12:12635434..12635452
+
Hg19::chr12:12635461..12635484,+p@chr12:12635461..12635484
+
Hg19::chr12:12713961..12713976,-p14@DUSP16
Hg19::chr12:12714006..12714021,-p15@DUSP16
Hg19::chr12:12714025..12714064,-p4@DUSP16
Hg19::chr12:12714066..12714108,+p@chr12:12714066..12714108
+
Hg19::chr12:12775594..12775630,-p@chr12:12775594..12775630
-
Hg19::chr12:56418637..56418648,+p9@IKZF4
Hg19::chr12:92445353..92445356,-p@chr12:92445353..92445356
-
Hg19::chr13:30510003..30510027,+p1@ENST00000400540
Hg19::chr13:40765017..40765053,-p@chr13:40765017..40765053
-
Hg19::chr13:48984656..48984665,+p@chr13:48984656..48984665
+
Hg19::chr13:75900881..75900923,-p2@TBC1D4
Hg19::chr13:87409604..87409610,-p@chr13:87409604..87409610
-
Hg19::chr13:99967027..99967041,+p16@UBAC2
Hg19::chr14:22976236..22976240,-p@chr14:22976236..22976240
-
Hg19::chr14:23004404..23004417,+p@chr14:23004404..23004417
+
Hg19::chr14:91712613..91712627,+p@chr14:91712613..91712627
+
Hg19::chr14:91777214..91777217,+p@chr14:91777214..91777217
+
Hg19::chr14:99707456..99707462,-p@chr14:99707456..99707462
-
Hg19::chr15:22550911..22550920,+p@chr15:22550911..22550920
+
Hg19::chr15:22550947..22550971,+p@chr15:22550947..22550971
+
Hg19::chr15:38964056..38964101,+p1@ENST00000557946
Hg19::chr15:62149711..62149734,-p@chr15:62149711..62149734
-
Hg19::chr15:63961074..63961079,+p@chr15:63961074..63961079
+
Hg19::chr15:63965111..63965141,-p@chr15:63965111..63965141
-
Hg19::chr16:50372905..50372915,-p@chr16:50372905..50372915
-
Hg19::chr16:57162957..57162973,+p@chr16:57162957..57162973
+
Hg19::chr16:57164428..57164453,+p@chr16:57164428..57164453
+
Hg19::chr17:29645688..29645699,+p@chr17:29645688..29645699
+
Hg19::chr17:29645703..29645717,+p@chr17:29645703..29645717
+
Hg19::chr17:29645772..29645777,+p@chr17:29645772..29645777
+
Hg19::chr18:13276704..13276707,-p@chr18:13276704..13276707
-
Hg19::chr18:13377159..13377168,+p@chr18:13377159..13377168
+
Hg19::chr18:13383177..13383191,-p@chr18:13383177..13383191
-
Hg19::chr18:21572756..21572768,+p18@TTC39C
Hg19::chr18:21572789..21572809,+p11@TTC39C
Hg19::chr18:21572813..21572830,+p16@TTC39C
Hg19::chr18:21572835..21572856,+p10@TTC39C
Hg19::chr18:21572860..21572883,+p12@TTC39C
Hg19::chr18:2606630..2606643,+p@chr18:2606630..2606643
+
Hg19::chr1:100889590..100889601,-p@chr1:100889590..100889601
-
Hg19::chr1:100889615..100889640,-p@chr1:100889615..100889640
-
Hg19::chr1:108329149..108329182,-p@chr1:108329149..108329182
-
Hg19::chr1:118197380..118197387,+p@chr1:118197380..118197387
+
Hg19::chr1:118198855..118198873,-p@chr1:118198855..118198873
-
Hg19::chr1:118198878..118198907,-p@chr1:118198878..118198907
-
Hg19::chr1:118198995..118199007,+p@chr1:118198995..118199007
+
Hg19::chr1:118201616..118201641,+p@chr1:118201616..118201641
+
Hg19::chr1:118207256..118207267,+p@chr1:118207256..118207267
+
Hg19::chr1:154377675..154377692,+p7@IL6R
Hg19::chr1:158900568..158900580,+p4@PYHIN1
Hg19::chr1:169652514..169652517,+p@chr1:169652514..169652517
+
Hg19::chr1:184861491..184861522,-p@chr1:184861491..184861522
-
Hg19::chr1:186287725..186287734,-p@chr1:186287725..186287734
-
Hg19::chr1:186290177..186290204,-p@chr1:186290177..186290204
-
Hg19::chr1:186293145..186293167,-p@chr1:186293145..186293167
-
Hg19::chr1:186293180..186293185,-p@chr1:186293180..186293185
-
Hg19::chr1:193426391..193426402,+p@chr1:193426391..193426402
+
Hg19::chr1:193428096..193428112,+p@chr1:193428096..193428112
+
Hg19::chr1:193448401..193448412,-p@chr1:193448401..193448412
-
Hg19::chr1:200842103..200842116,+p1@GPR25
Hg19::chr1:25255894..25255906,+p@chr1:25255894..25255906
+
Hg19::chr1:40854406..40854413,+p@chr1:40854406..40854413
+
Hg19::chr1:8213538..8213546,-p@chr1:8213538..8213546
-
Hg19::chr20:44521809..44521827,+p11@CTSA
Hg19::chr20:4642112..4642117,+p@chr20:4642112..4642117
+
Hg19::chr20:47438166..47438202,-p@chr20:47438166..47438202
-
Hg19::chr20:57740067..57740074,+p@chr20:57740067..57740074
+
Hg19::chr21:32568033..32568068,-p@chr21:32568033..32568068
-
Hg19::chr21:47971523..47971557,+p@chr21:47971523..47971557
+
Hg19::chr2:112224582..112224600,+p@chr2:112224582..112224600
+
Hg19::chr2:158297507..158297544,-p@chr2:158297507..158297544
-
Hg19::chr2:198562922..198562964,+p@chr2:198562922..198562964
+
Hg19::chr2:204571443..204571454,+p5@CD28
Hg19::chr2:204718698..204718703,+p@chr2:204718698..204718703
+
Hg19::chr2:204732487..204732521,+p1@CTLA4
Hg19::chr2:204732524..204732537,+p3@CTLA4
Hg19::chr2:204732580..204732598,+p2@CTLA4
Hg19::chr2:204732682..204732693,+p4@CTLA4
Hg19::chr2:204736259..204736275,-p@chr2:204736259..204736275
-
Hg19::chr2:204736545..204736556,+p@chr2:204736545..204736556
+
Hg19::chr2:204891853..204891863,-p@chr2:204891853..204891863
-
Hg19::chr2:213963849..213963858,-p@chr2:213963849..213963858
-
Hg19::chr2:213963876..213963889,-p@chr2:213963876..213963889
-
Hg19::chr2:214012337..214012351,-p@chr2:214012337..214012351
-
Hg19::chr2:214012365..214012410,-p@chr2:214012365..214012410
-
Hg19::chr2:241975597..241975616,+p@chr2:241975597..241975616
+
Hg19::chr3:114012819..114012830,+p4@TIGIT
Hg19::chr3:114012837..114012850,+p2@TIGIT
Hg19::chr3:114012855..114012862,+p5@TIGIT
Hg19::chr3:114012867..114012887,+p1@TIGIT
Hg19::chr3:183067487..183067500,+p@chr3:183067487..183067500
+
Hg19::chr3:183067510..183067522,+p@chr3:183067510..183067522
+
Hg19::chr3:33086412..33086426,+p@chr3:33086412..33086426
+
Hg19::chr3:45986539..45986570,+p2@CXCR6
Hg19::chr3:56627780..56627823,+p1@HQ234308
Hg19::chr3:60033427..60033438,+p@chr3:60033427..60033438
+
Hg19::chr3:66353087..66353127,+p@chr3:66353087..66353127
+
Hg19::chr3:66444556..66444563,-p@chr3:66444556..66444563
-
Hg19::chr3:71551472..71551476,-p@chr3:71551472..71551476
-
Hg19::chr3:73010101..73010107,+p@chr3:73010101..73010107
+
Hg19::chr3:73015629..73015632,+p@chr3:73015629..73015632
+
Hg19::chr4:78722513..78722551,-p@chr4:78722513..78722551
-
Hg19::chr5:126189802..126189808,-p@chr5:126189802..126189808
-
Hg19::chr5:67576339..67576353,+p8@PIK3R1
Hg19::chr5:75839276..75839297,+p@chr5:75839276..75839297
+
Hg19::chr5:96050863..96050877,+p@chr5:96050863..96050877
+
Hg19::chr6:106546834..106546850,+p4@PRDM1
Hg19::chr6:112078784..112078808,-p@chr6:112078784..112078808
-
Hg19::chr6:138115457..138115471,+p@chr6:138115457..138115471
+
Hg19::chr6:167525277..167525292,+p3@CCR6
Hg19::chr6:167527544..167527563,-p@chr6:167527544..167527563
-
Hg19::chr6:167527588..167527601,-p@chr6:167527588..167527601
-
Hg19::chr6:167527627..167527634,-p@chr6:167527627..167527634
-
Hg19::chr6:167527638..167527665,-p@chr6:167527638..167527665
-
Hg19::chr6:167528231..167528238,+p@chr6:167528231..167528238
+
Hg19::chr6:167533072..167533078,-p@chr6:167533072..167533078
-
Hg19::chr6:167535904..167535935,+p6@CCR6
Hg19::chr6:36922228..36922251,+p5@PI16
Hg19::chr6:36922265..36922280,+p4@PI16
Hg19::chr7:130623689..130623700,+p@chr7:130623689..130623700
+
Hg19::chr7:130623728..130623739,+p@chr7:130623728..130623739
+
Hg19::chr7:1966886..1966912,+p@chr7:1966886..1966912
+
Hg19::chr7:1980103..1980127,-p5@MAD1L1
Hg19::chr7:44663908..44663917,+p6@OGDH
Hg19::chr7:5862938..5862949,+p5@ZNF815
Hg19::chr7:8183804..8183812,-p@chr7:8183804..8183812
-
Hg19::chr8:19372703..19372715,-p@chr8:19372703..19372715
-
Hg19::chr8:29938837..29938842,+p@chr8:29938837..29938842
+
Hg19::chr8:30013422..30013433,+p4@DCTN6
Hg19::chr9:123640450..123640455,-p@chr9:123640450..123640455
-
Hg19::chrY:23300437..23300442,+p@chrY:23300437..23300442
+
Hg19::chrY:23300496..23300510,+p@chrY:23300496..23300510
+
Hg19::chrY:23300512..23300525,+p@chrY:23300512..23300525
+
Hg19::chrY:23300567..23300577,+p@chrY:23300567..23300577
+
Hg19::chrY:23317687..23317689,+p@chrY:23317687..23317689
+
Hg19::chrY:23411642..23411670,+p@chrY:23411642..23411670
+
Hg19::chrY:23411694..23411707,+p@chrY:23411694..23411707
+
Hg19::chrY:23411712..23411746,+p@chrY:23411712..23411746
+
Hg19::chrY:23411747..23411768,+p@chrY:23411747..23411768
+
Hg19::chrY:23416616..23416638,+p@chrY:23416616..23416638
+
Hg19::chrY:23416642..23416670,+p@chrY:23416642..23416670
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0042277peptide binding0.000964878835959757
GO:0005887integral to plasma membrane0.000964878835959757
GO:0031226intrinsic to plasma membrane0.000964878835959757
GO:0004945angiotensin type II receptor activity0.000964878835959757
GO:0001595angiotensin receptor activity0.000964878835959757
GO:0019955cytokine binding0.00179502772967683
GO:0015026coreceptor activity0.00229165706264122
GO:0008528peptide receptor activity, G-protein coupled0.00334468907473246
GO:0001653peptide receptor activity0.00334468907473246
GO:0019957C-C chemokine binding0.00334468907473246
GO:0016493C-C chemokine receptor activity0.00334468907473246
GO:0019079viral genome replication0.00450212279542765
GO:0004950chemokine receptor activity0.00582811155172879
GO:0001637G-protein chemoattractant receptor activity0.00582811155172879
GO:0044459plasma membrane part0.00582811155172879
GO:0019956chemokine binding0.00582811155172879
GO:0019058viral infectious cycle0.00889621518374608
GO:0022415viral reproductive process0.00889621518374608
GO:0050164oxoglutarate dehydrogenase (NADP+) activity0.00889621518374608
GO:0045209MAPK phosphatase export from nucleus, leptomycin B sensitive0.00889621518374608
GO:0005896interleukin-6 receptor complex0.00889621518374608
GO:0000093mitotic telophase0.00889621518374608
GO:0045204MAPK export from nucleus0.00889621518374608
GO:0051326telophase0.00889621518374608
GO:0035030phosphoinositide 3-kinase complex, class IA0.00889621518374608
GO:0045208MAPK phosphatase export from nucleus0.00889621518374608
GO:0004186carboxypeptidase C activity0.00889621518374608
GO:0007088regulation of mitosis0.0103676024692682
GO:0006959humoral immune response0.0125281501399269
GO:0019981interleukin-6 binding0.0150081649108715
GO:0004915interleukin-6 receptor activity0.0150081649108715
GO:0043559insulin binding0.0150081649108715
GO:0051323metaphase0.0211820727278141
GO:0000089mitotic metaphase0.0211820727278141
GO:0007166cell surface receptor linked signal transduction0.0252319048871694
GO:0045502dynein binding0.0259455531866042
GO:0043125ErbB-3 class receptor binding0.0259455531866042
GO:0051322anaphase0.02925966667654
GO:0000090mitotic anaphase0.02925966667654
GO:0043560insulin receptor substrate binding0.02925966667654
GO:0045070positive regulation of viral genome replication0.02925966667654
GO:0048524positive regulation of viral reproduction0.0381492264024993
GO:0004591oxoglutarate dehydrogenase (succinyl-transferring) activity0.0381492264024993
GO:0048009insulin-like growth factor receptor signaling pathway0.0381492264024993
GO:0005886plasma membrane0.0399546847062203
GO:0006955immune response0.0399546847062203
GO:0045768positive regulation of anti-apoptosis0.0399546847062203
GO:0005869dynactin complex0.0399546847062203
GO:0017046peptide hormone binding0.0431389984972692
GO:0035014phosphoinositide 3-kinase regulator activity0.0431389984972692
GO:0004888transmembrane receptor activity0.0435256927353548
GO:0007165signal transduction0.0470499784077165
GO:0005159insulin-like growth factor receptor binding0.0470499784077165
GO:0004185serine carboxypeptidase activity0.0470499784077165
GO:0016494C-X-C chemokine receptor activity0.0470499784077165
GO:0045086positive regulation of interleukin-2 biosynthetic process0.0470499784077165
GO:0045840positive regulation of mitosis0.0483246687840058
GO:0019958C-X-C chemokine binding0.0483246687840058
GO:0045767regulation of anti-apoptosis0.0483246687840058
GO:0004872receptor activity0.0483246687840058



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
mature alpha-beta T cell2.41e-4718
alpha-beta T cell2.41e-4718
immature T cell2.41e-4718
mature T cell2.41e-4718
immature alpha-beta T cell2.41e-4718
T cell3.46e-3325
pro-T cell3.46e-3325
CD4-positive, alpha-beta T cell1.81e-286
CD8-positive, alpha-beta T cell4.78e-2511
lymphoid lineage restricted progenitor cell1.19e-2152
lymphocyte3.62e-2153
common lymphoid progenitor3.62e-2153
nucleate cell2.98e-2055
naive T cell2.23e-153
natural killer cell2.37e-143
pro-NK cell2.37e-143
single nucleate cell4.47e-143
mononuclear cell4.47e-143
nongranular leukocyte8.61e-14115
leukocyte2.13e-13136
regulatory T cell6.85e-112
CD4-positive, CD25-positive, alpha-beta regulatory T cell6.85e-112
naive regulatory T cell6.85e-112
hematopoietic stem cell7.82e-10168
angioblastic mesenchymal cell7.82e-10168
hematopoietic lineage restricted progenitor cell3.39e-09120
hematopoietic cell4.56e-09177
hematopoietic oligopotent progenitor cell1.73e-07161
hematopoietic multipotent progenitor cell1.73e-07161
circulating cell2.90e-076
Uber Anatomy
Ontology termp-valuen
thymus2.09e-104
hemolymphoid system gland2.09e-104
thymic region2.09e-104
pharyngeal gland2.09e-104
thymus primordium2.09e-104
hemopoietic organ4.70e-107
immune organ4.70e-107
pharyngeal epithelium4.38e-076
chordate pharynx4.51e-0710
pharyngeal region of foregut4.51e-0710


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10
MA0004.10.115255
MA0006.10.00463331
MA0007.10.0238329
MA0009.10.469569
MA0014.10
MA0017.10.0816364
MA0019.10.662815
MA0024.10.00967451
MA0025.12.80033
MA0027.11.18663
MA0028.10.0155979
MA0029.11.49084
MA0030.11.83557
MA0031.12.24272
MA0038.10.125006
MA0040.10.537389
MA0041.12.78157
MA0042.13.76888
MA0043.10.470226
MA0046.11.90902
MA0048.15.6674e-06
MA0050.13.40238
MA0051.10.0612526
MA0052.10.547325
MA0055.15.55648e-07
MA0056.10
MA0057.13.05385e-08
MA0058.10.187381
MA0059.10.00153871
MA0060.10.0949256
MA0061.10.000117082
MA0063.10
MA0066.10.0095068
MA0067.10.128107
MA0068.10.253554
MA0069.10.0926088
MA0070.10.682474
MA0071.11.37521
MA0072.13.33774
MA0073.10
MA0074.10.0606976
MA0076.10.0327651
MA0077.10.648141
MA0078.11.16338
MA0081.10.0440924
MA0083.11.13782
MA0084.10.233716
MA0087.11.3573
MA0088.19.81078e-07
MA0089.10
MA0090.10.00950933
MA0091.11.37943
MA0092.10.119505
MA0093.10.0654948
MA0095.10
MA0098.10
MA0100.10.0756426
MA0101.10.00228562
MA0103.10.326513
MA0105.12.90182e-10
MA0106.10.458092
MA0107.10.00237713
MA0108.21.42662
MA0109.10
MA0111.10.228426
MA0113.10.345611
MA0114.10.00193781
MA0115.10.645111
MA0116.10.000438167
MA0117.10.550635
MA0119.10.00733647
MA0122.10.609693
MA0124.10.267741
MA0125.10.418484
MA0130.10
MA0131.10.0117207
MA0132.10
MA0133.10
MA0135.14.53519
MA0136.11.76168
MA0139.13.73099e-07
MA0140.11.35387
MA0141.10.602919
MA0142.10.0679538
MA0143.10.956103
MA0144.10.0294135
MA0145.13.4738e-08
MA0146.11.36935e-14
MA0147.11.21295e-05
MA0148.11.0761
MA0149.10.069045
MA0062.20.00224805
MA0035.26.65036
MA0039.20
MA0138.20.00139046
MA0002.22.31324
MA0137.20.628184
MA0104.25.26944e-08
MA0047.21.62812
MA0112.20.0016832
MA0065.20.000134438
MA0150.10.969353
MA0151.10
MA0152.10.698094
MA0153.10.693865
MA0154.19.49561e-06
MA0155.10.000167293
MA0156.10.962165
MA0157.13.05541
MA0158.10
MA0159.10.327592
MA0160.10.955427
MA0161.10
MA0162.10
MA0163.10
MA0164.10.133723
MA0080.21.50216
MA0018.20.876079
MA0099.20.151845
MA0079.20
MA0102.20.257943
MA0258.10.11669
MA0259.17.52314e-05
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
BATF#10538151.996541130516690.008888043208448340.0337217402785315
BCL11A#53335203.100486896569088.57593585582864e-060.000233063274745482
GATA2#2624241.671466456859540.009264063286790170.0350034190372663



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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