FFCP PHASE1:Hg19::chr13:25755497..25755513,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=-65bp_to_ENST00000457628_5end|coexpression_cluster_id=C87|description=CAGE_peak_1_at_ENST00000457628_5end|id=chr13:25755497..25755513,+|ontology_enrichment_celltype=CL:0000080!2.19e-14!6;CL:0000945!5.76e-13!24;CL:0000826!5.76e-13!24;CL:0000946!2.28e-10!1;CL:0000786!2.28e-10!1;CL:0000980!2.28e-10!1|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0003056;1.85e-12;3|ontology_enrichment_disease=DOID:630!1.89e-10!1;DOID:0050177!1.89e-10!1;DOID:0050427!1.89e-10!1;DOID:2355!2.08e-10!1|ontology_enrichment_disease_v019=DOID:5409;1.27e-09;4|ontology_enrichment_disease_v019_2=DOID:5409,1.32e-09,4|ontology_enrichment_uberon=UBERON:0001905!7.08e-20!2;UBERON:0002757!7.08e-20!2;UBERON:0010134!7.08e-20!2;UBERON:0002784!7.08e-20!2;UBERON:0005408!7.08e-20!2;UBERON:0001899!7.08e-20!2;UBERON:0003296!2.08e-10!4;UBERON:0010133!2.08e-10!4;UBERON:0001882!4.75e-10!1;UBERON:0005403!4.75e-10!1;UBERON:0002331!7.63e-09!10;UBERON:0000358!7.63e-09!10;UBERON:0000307!7.63e-09!10;UBERON:0000091!7.63e-09!10;UBERON:0000087!7.63e-09!10;UBERON:0007806!7.63e-09!10;UBERON:0008780!7.63e-09!10;UBERON:0005728!7.63e-09!10;UBERON:0000966!2.45e-08!5;UBERON:0005388!2.45e-08!5;UBERON:0001802!2.45e-08!5;UBERON:0000970!1.28e-07!20;UBERON:0002104!2.91e-07!21|ontology_enrichment_uberon_v019=UBERON:0001905;2.40e-66;2!UBERON:0002757;2.40e-66;2!UBERON:0010134;2.40e-66;2!UBERON:0005408;2.40e-66;2!UBERON:0001899;2.40e-66;2!UBERON:0003296;7.69e-34;4!UBERON:0010133;7.69e-34;4!UBERON:0002784;7.69e-34;4!UBERON:0001894;7.48e-20;7!UBERON:0002106;3.06e-12;3!UBERON:0000966;5.35e-08;5!UBERON:0005388;5.35e-08;5!UBERON:0001802;5.35e-08;5!UBERON:0004177;7.25e-08;5!UBERON:0005057;7.25e-08;5!UBERON:0000970;1.31e-07;20!UBERON:0002104;2.73e-07;21!UBERON:0000020;9.81e-07;23|ontology_enrichment_uberon_v019_2=UBERON:0001905,2.03e-66,2;UBERON:0002757,2.03e-66,2;UBERON:0010134,2.03e-66,2;UBERON:0005408,2.03e-66,2;UBERON:0001899,2.03e-66,2;UBERON:0003296,7.07e-34,4;UBERON:0010133,7.07e-34,4;UBERON:0002784,7.07e-34,4;UBERON:0001894,7.13e-20,7;UBERON:0006222,7.13e-20,7;UBERON:0002106,3.24e-12,3;UBERON:0004854,3.24e-12,3;UBERON:0009034,3.24e-12,3;UBERON:0002095,3.24e-12,3;UBERON:0004782,3.24e-12,3;UBERON:0003281,3.24e-12,3;UBERON:0009664,3.24e-12,3;UBERON:0002296,3.24e-12,3;UBERON:0005602,3.24e-12,3;UBERON:0001179,3.24e-12,3;UBERON:0006293,3.24e-12,3;UBERON:0000970,2.69e-07,21;UBERON:0002104,2.69e-07,21;UBERON:0000966,7.17e-07,6;UBERON:0005388,7.17e-07,6;UBERON:0001802,7.17e-07,6|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.463721619900307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889563386041866,0.370691816839509,0.417687798021821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58186518546373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254019996197353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.8568440610789,42.7080327217906,0,0,0,0.230467975111559,0,0,0,0,0,0,0,0,0,0,0,0.214429632529969,49.4582604723434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,42.1072179134994,0,0,0,0,0,0,0,0,0,0,0,0,1.19929387109915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233|short_description=p1@ENST00000457628}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-65bp_to_ENST00000457628_5end | |||
|coexpression_cluster_id=C87 | |||
|description=CAGE_peak_1_at_ENST00000457628_5end | |||
|id=chr13:25755497..25755513,+ | |||
|ontology_enrichment_celltype=CL:0000080!2.19e-14!6;CL:0000945!5.76e-13!24;CL:0000826!5.76e-13!24;CL:0000946!2.28e-10!1;CL:0000786!2.28e-10!1;CL:0000980!2.28e-10!1 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.85e-12;3 | |||
|ontology_enrichment_disease=DOID:630!1.89e-10!1;DOID:0050177!1.89e-10!1;DOID:0050427!1.89e-10!1;DOID:2355!2.08e-10!1 | |||
|ontology_enrichment_disease_v019=DOID:5409;1.27e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,1.32e-09,4 | |||
|ontology_enrichment_uberon=UBERON:0001905!7.08e-20!2;UBERON:0002757!7.08e-20!2;UBERON:0010134!7.08e-20!2;UBERON:0002784!7.08e-20!2;UBERON:0005408!7.08e-20!2;UBERON:0001899!7.08e-20!2;UBERON:0003296!2.08e-10!4;UBERON:0010133!2.08e-10!4;UBERON:0001882!4.75e-10!1;UBERON:0005403!4.75e-10!1;UBERON:0002331!7.63e-09!10;UBERON:0000358!7.63e-09!10;UBERON:0000307!7.63e-09!10;UBERON:0000091!7.63e-09!10;UBERON:0000087!7.63e-09!10;UBERON:0007806!7.63e-09!10;UBERON:0008780!7.63e-09!10;UBERON:0005728!7.63e-09!10;UBERON:0000966!2.45e-08!5;UBERON:0005388!2.45e-08!5;UBERON:0001802!2.45e-08!5;UBERON:0000970!1.28e-07!20;UBERON:0002104!2.91e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;2.40e-66;2!UBERON:0002757;2.40e-66;2!UBERON:0010134;2.40e-66;2!UBERON:0005408;2.40e-66;2!UBERON:0001899;2.40e-66;2!UBERON:0003296;7.69e-34;4!UBERON:0010133;7.69e-34;4!UBERON:0002784;7.69e-34;4!UBERON:0001894;7.48e-20;7!UBERON:0002106;3.06e-12;3!UBERON:0000966;5.35e-08;5!UBERON:0005388;5.35e-08;5!UBERON:0001802;5.35e-08;5!UBERON:0004177;7.25e-08;5!UBERON:0005057;7.25e-08;5!UBERON:0000970;1.31e-07;20!UBERON:0002104;2.73e-07;21!UBERON:0000020;9.81e-07;23 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,2.03e-66,2;UBERON:0002757,2.03e-66,2;UBERON:0010134,2.03e-66,2;UBERON:0005408,2.03e-66,2;UBERON:0001899,2.03e-66,2;UBERON:0003296,7.07e-34,4;UBERON:0010133,7.07e-34,4;UBERON:0002784,7.07e-34,4;UBERON:0001894,7.13e-20,7;UBERON:0006222,7.13e-20,7;UBERON:0002106,3.24e-12,3;UBERON:0004854,3.24e-12,3;UBERON:0009034,3.24e-12,3;UBERON:0002095,3.24e-12,3;UBERON:0004782,3.24e-12,3;UBERON:0003281,3.24e-12,3;UBERON:0009664,3.24e-12,3;UBERON:0002296,3.24e-12,3;UBERON:0005602,3.24e-12,3;UBERON:0001179,3.24e-12,3;UBERON:0006293,3.24e-12,3;UBERON:0000970,2.69e-07,21;UBERON:0002104,2.69e-07,21;UBERON:0000966,7.17e-07,6;UBERON:0005388,7.17e-07,6;UBERON:0001802,7.17e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.463721619900307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889563386041866,0.370691816839509,0.417687798021821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58186518546373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254019996197353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.8568440610789,42.7080327217906,0,0,0,0.230467975111559,0,0,0,0,0,0,0,0,0,0,0,0.214429632529969,49.4582604723434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,42.1072179134994,0,0,0,0,0,0,0,0,0,0,0,0,1.19929387109915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | |||
|short_description=p1@ENST00000457628 | |||
}} |
Revision as of 01:50, 11 September 2013
Short description: | p1@ENST00000457628 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ENST00000457628_5end |
Coexpression cluster: | C87_retinoblastoma_left_nonsmall_heart_small_diaphragm_bronchogenic |
Association with transcript: | -65bp_to_ENST00000457628_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 2.03e-66 | 2 |
regional part of epithalamus | 2.03e-66 | 2 |
secretory circumventricular organ | 2.03e-66 | 2 |
circumventricular organ | 2.03e-66 | 2 |
epithalamus | 2.03e-66 | 2 |
gland of diencephalon | 7.07e-34 | 4 |
neuroendocrine gland | 7.07e-34 | 4 |
regional part of diencephalon | 7.07e-34 | 4 |
diencephalon | 7.13e-20 | 7 |
future diencephalon | 7.13e-20 | 7 |
spleen | 3.24e-12 | 3 |
gastrointestinal system mesentery | 3.24e-12 | 3 |
stomach region | 3.24e-12 | 3 |
mesentery | 3.24e-12 | 3 |
gastrointestinal system serosa | 3.24e-12 | 3 |
mesentery of stomach | 3.24e-12 | 3 |
gut mesentery | 3.24e-12 | 3 |
dorsal mesentery | 3.24e-12 | 3 |
dorsal mesogastrium | 3.24e-12 | 3 |
peritoneal cavity | 3.24e-12 | 3 |
spleen primordium | 3.24e-12 | 3 |
eye | 2.69e-07 | 21 |
visual system | 2.69e-07 | 21 |
retina | 7.17e-07 | 6 |
photoreceptor array | 7.17e-07 | 6 |
posterior segment of eyeball | 7.17e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 1.32e-09 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.