FFCP PHASE1:Hg19::chr15:67458836..67458859,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4088|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6769|TSSclassifier=S|UniProt=|association_with_transcript=-9bp_to_ENST00000558428,ENST00000558827_5end|description=CAGE_peak_22_at_SMAD3_5end|id=chr15:67458836..67458859,+|ontology_enrichment_celltype=CL:0002321!1.49e-17!248;CL:0000220!1.57e-16!246;CL:0000393!9.50e-12!60;CL:0000211!9.50e-12!60;CL:0000222!5.47e-11!119;CL:0000187!6.42e-11!54;CL:0000192!1.17e-10!42;CL:0000514!1.17e-10!42;CL:0000359!6.67e-10!32;CL:0000076!6.73e-10!62;CL:0000680!7.30e-10!57;CL:0000056!7.30e-10!57;CL:0000355!7.30e-10!57;CL:0000183!3.16e-09!59;CL:0000066!7.96e-08!254|ontology_enrichment_celltype_v019=CL:0000244;2.83e-15;4!CL:0000731;2.83e-15;4!CL:0000359;3.23e-15;32!CL:0002595;3.09e-12;5!CL:0002621;9.32e-12;3!CL:0000575;3.17e-09;2!CL:0002589;7.04e-09;2!CL:0000192;1.07e-08;43!CL:0002596;1.51e-08;2!CL:0002322;5.77e-07;5|ontology_enrichment_celltype_v019_2=CL:0000359,8.14e-17,32;CL:0000244,1.10e-15,4;CL:0000731,1.10e-15,4;CL:0002595,2.15e-12,5;CL:0000192,9.14e-12,43;CL:0000514,9.14e-12,43;CL:0002621,1.99e-11,3;CL:0002321,2.69e-10,250;CL:0000575,3.44e-09,2;CL:0002589,8.75e-09,2;CL:0000393,9.41e-09,61;CL:0000211,9.41e-09,61;CL:0000187,1.39e-08,55;CL:0002596,1.43e-08,2;CL:0000680,5.33e-08,58;CL:0000056,5.33e-08,58;CL:0000355,5.33e-08,58;CL:0002322,9.98e-07,5|ontology_enrichment_development_v019=CL:0000514;1.07e-08;43|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000486!4.12e-12!82;UBERON:0004573!3.26e-11!33;UBERON:0004571!3.26e-11!33;UBERON:0001637!2.88e-10!42;UBERON:0003509!2.88e-10!42;UBERON:0004572!2.88e-10!42;UBERON:0001134!3.08e-10!61;UBERON:0002036!3.08e-10!61;UBERON:0003082!3.08e-10!61;UBERON:0002385!1.30e-09!63;UBERON:0001015!1.30e-09!63;UBERON:0000383!1.30e-09!63;UBERON:0004290!9.65e-08!70;UBERON:0000914!1.82e-07!83;UBERON:0002329!1.82e-07!83;UBERON:0003077!1.82e-07!83;UBERON:0003059!1.82e-07!83;UBERON:0007282!1.82e-07!83;UBERON:0009618!1.82e-07!83;UBERON:0007285!1.82e-07!83;UBERON:0001981!5.07e-07!60;UBERON:0007500!5.07e-07!60;UBERON:0004537!5.07e-07!60;UBERON:0006965!5.07e-07!60;UBERON:0002049!8.29e-07!79;UBERON:0007798!8.29e-07!79;UBERON:0002100!8.99e-07!216|ontology_enrichment_uberon_v019=UBERON:0000486;2.46e-14;12!UBERON:0003834;3.09e-12;5!UBERON:0000365;3.09e-12;5!UBERON:0001533;3.09e-12;5!UBERON:0004573;3.19e-12;33!UBERON:0004571;3.19e-12;33!UBERON:0001949;9.32e-12;3!UBERON:0005910;3.31e-10;6!UBERON:0001637;4.90e-09;42!UBERON:0003509;4.90e-09;42!UBERON:0004572;4.90e-09;42!UBERON:0001529;7.04e-09;2!UBERON:0007204;7.04e-09;2!UBERON:0003513;9.40e-09;7!UBERON:0005396;1.51e-08;2!UBERON:0000473;1.33e-07;8|ontology_enrichment_uberon_v019_2=UBERON:0000486,1.61e-14,83;UBERON:0004573,1.06e-13,33;UBERON:0004571,1.06e-13,33;UBERON:0000365,1.46e-12,5;UBERON:0003834,2.15e-12,5;UBERON:0001533,2.15e-12,5;UBERON:0001637,4.09e-12,42;UBERON:0003509,4.09e-12,42;UBERON:0004572,4.09e-12,42;UBERON:0001949,1.99e-11,3;UBERON:0005910,1.79e-10,6;UBERON:0003513,7.30e-09,7;UBERON:0001529,8.75e-09,2;UBERON:0007204,8.75e-09,2;UBERON:0001134,1.41e-08,62;UBERON:0002036,1.41e-08,62;UBERON:0003082,1.41e-08,62;UBERON:0005396,1.43e-08,2;UBERON:0002385,3.23e-08,64;UBERON:0001015,3.23e-08,64;UBERON:0000383,3.23e-08,64;UBERON:0007500,8.10e-08,59;UBERON:0001981,8.10e-08,59;UBERON:0004537,8.10e-08,59;UBERON:0006965,8.10e-08,59;UBERON:0000473,1.02e-07,8;UBERON:0002329,4.07e-07,71;UBERON:0003059,4.07e-07,71;UBERON:0007282,4.07e-07,71;UBERON:0004290,4.07e-07,71;UBERON:0009618,4.07e-07,71;UBERON:0003077,5.61e-07,72;UBERON:0007285,5.61e-07,72;UBERON:0007524,7.66e-07,73|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,1.20538905604795,0,0.487932798790507,0.984968464614303,1.22400414746552,0,0.286235987131057,0.136874425072884,0.125542639594803,0,0.0821005894499457,0,0,0,0,0,1.50602959389125,1.10926203050036,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0.50133791063589,0.144846518960824,0,0.486634870302636,0,0.221729397462564,0,0,4.73583874780305,4.07862887062872,0,0,0,0,0,0,0.198762407366705,0,0.694281003215189,0,0,0,0,0.258416759169329,0,0,0,0,0,0.367663080345869,0.81014194788176,0.0892997282840798,0,0,0,0.949265659568129,0.916008719652036,0,0,2.18047026071267,0.496971951695318,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0.150238058906597,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0.323292113637624,0,0,0,1.15956511897978,3.00020732649918,1.14721838155602,1.21973706129595,0.530119073285941,0.116193942869518,1.24393266018445,1.00928340350251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.514703430895577,0.109750285408626,0,0.603173834469785,4.9997760385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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4088 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6769 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-9bp_to_ENST00000558428,ENST00000558827_5end | |||
|description=CAGE_peak_22_at_SMAD3_5end | |||
|id=chr15:67458836..67458859,+ | |||
|ontology_enrichment_celltype=CL:0002321!1.49e-17!248;CL:0000220!1.57e-16!246;CL:0000393!9.50e-12!60;CL:0000211!9.50e-12!60;CL:0000222!5.47e-11!119;CL:0000187!6.42e-11!54;CL:0000192!1.17e-10!42;CL:0000514!1.17e-10!42;CL:0000359!6.67e-10!32;CL:0000076!6.73e-10!62;CL:0000680!7.30e-10!57;CL:0000056!7.30e-10!57;CL:0000355!7.30e-10!57;CL:0000183!3.16e-09!59;CL:0000066!7.96e-08!254 | |||
|ontology_enrichment_celltype_v019=CL:0000244;2.83e-15;4!CL:0000731;2.83e-15;4!CL:0000359;3.23e-15;32!CL:0002595;3.09e-12;5!CL:0002621;9.32e-12;3!CL:0000575;3.17e-09;2!CL:0002589;7.04e-09;2!CL:0000192;1.07e-08;43!CL:0002596;1.51e-08;2!CL:0002322;5.77e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,8.14e-17,32;CL:0000244,1.10e-15,4;CL:0000731,1.10e-15,4;CL:0002595,2.15e-12,5;CL:0000192,9.14e-12,43;CL:0000514,9.14e-12,43;CL:0002621,1.99e-11,3;CL:0002321,2.69e-10,250;CL:0000575,3.44e-09,2;CL:0002589,8.75e-09,2;CL:0000393,9.41e-09,61;CL:0000211,9.41e-09,61;CL:0000187,1.39e-08,55;CL:0002596,1.43e-08,2;CL:0000680,5.33e-08,58;CL:0000056,5.33e-08,58;CL:0000355,5.33e-08,58;CL:0002322,9.98e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000514;1.07e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!4.12e-12!82;UBERON:0004573!3.26e-11!33;UBERON:0004571!3.26e-11!33;UBERON:0001637!2.88e-10!42;UBERON:0003509!2.88e-10!42;UBERON:0004572!2.88e-10!42;UBERON:0001134!3.08e-10!61;UBERON:0002036!3.08e-10!61;UBERON:0003082!3.08e-10!61;UBERON:0002385!1.30e-09!63;UBERON:0001015!1.30e-09!63;UBERON:0000383!1.30e-09!63;UBERON:0004290!9.65e-08!70;UBERON:0000914!1.82e-07!83;UBERON:0002329!1.82e-07!83;UBERON:0003077!1.82e-07!83;UBERON:0003059!1.82e-07!83;UBERON:0007282!1.82e-07!83;UBERON:0009618!1.82e-07!83;UBERON:0007285!1.82e-07!83;UBERON:0001981!5.07e-07!60;UBERON:0007500!5.07e-07!60;UBERON:0004537!5.07e-07!60;UBERON:0006965!5.07e-07!60;UBERON:0002049!8.29e-07!79;UBERON:0007798!8.29e-07!79;UBERON:0002100!8.99e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000486;2.46e-14;12!UBERON:0003834;3.09e-12;5!UBERON:0000365;3.09e-12;5!UBERON:0001533;3.09e-12;5!UBERON:0004573;3.19e-12;33!UBERON:0004571;3.19e-12;33!UBERON:0001949;9.32e-12;3!UBERON:0005910;3.31e-10;6!UBERON:0001637;4.90e-09;42!UBERON:0003509;4.90e-09;42!UBERON:0004572;4.90e-09;42!UBERON:0001529;7.04e-09;2!UBERON:0007204;7.04e-09;2!UBERON:0003513;9.40e-09;7!UBERON:0005396;1.51e-08;2!UBERON:0000473;1.33e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,1.61e-14,83;UBERON:0004573,1.06e-13,33;UBERON:0004571,1.06e-13,33;UBERON:0000365,1.46e-12,5;UBERON:0003834,2.15e-12,5;UBERON:0001533,2.15e-12,5;UBERON:0001637,4.09e-12,42;UBERON:0003509,4.09e-12,42;UBERON:0004572,4.09e-12,42;UBERON:0001949,1.99e-11,3;UBERON:0005910,1.79e-10,6;UBERON:0003513,7.30e-09,7;UBERON:0001529,8.75e-09,2;UBERON:0007204,8.75e-09,2;UBERON:0001134,1.41e-08,62;UBERON:0002036,1.41e-08,62;UBERON:0003082,1.41e-08,62;UBERON:0005396,1.43e-08,2;UBERON:0002385,3.23e-08,64;UBERON:0001015,3.23e-08,64;UBERON:0000383,3.23e-08,64;UBERON:0007500,8.10e-08,59;UBERON:0001981,8.10e-08,59;UBERON:0004537,8.10e-08,59;UBERON:0006965,8.10e-08,59;UBERON:0000473,1.02e-07,8;UBERON:0002329,4.07e-07,71;UBERON:0003059,4.07e-07,71;UBERON:0007282,4.07e-07,71;UBERON:0004290,4.07e-07,71;UBERON:0009618,4.07e-07,71;UBERON:0003077,5.61e-07,72;UBERON:0007285,5.61e-07,72;UBERON:0007524,7.66e-07,73 | |||
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|short_description=p22@SMAD3 | |||
}} |
Revision as of 07:58, 11 September 2013
Short description: | p22@SMAD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_22_at_SMAD3_5end |
Coexpression cluster: | NA |
Association with transcript: | -9bp_to_ENST00000558428, ENST00000558827_5end |
EntrezGene: | SMAD3 |
HGNC: | 6769 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 8.14e-17 | 32 |
transitional epithelial cell | 1.10e-15 | 4 |
urothelial cell | 1.10e-15 | 4 |
smooth muscle cell of the subclavian artery | 2.15e-12 | 5 |
smooth muscle cell | 9.14e-12 | 43 |
smooth muscle myoblast | 9.14e-12 | 43 |
gingival epithelial cell | 1.99e-11 | 3 |
embryonic cell | 2.69e-10 | 250 |
corneal epithelial cell | 3.44e-09 | 2 |
smooth muscle cell of the brachiocephalic vasculature | 8.75e-09 | 2 |
electrically responsive cell | 9.41e-09 | 61 |
electrically active cell | 9.41e-09 | 61 |
muscle cell | 1.39e-08 | 55 |
smooth muscle cell of the carotid artery | 1.43e-08 | 2 |
muscle precursor cell | 5.33e-08 | 58 |
myoblast | 5.33e-08 | 58 |
multi-potent skeletal muscle stem cell | 5.33e-08 | 58 |
embryonic stem cell | 9.98e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 1.61e-14 | 83 |
systemic artery | 1.06e-13 | 33 |
systemic arterial system | 1.06e-13 | 33 |
urothelium | 1.46e-12 | 5 |
thoracic segment blood vessel | 2.15e-12 | 5 |
subclavian artery | 2.15e-12 | 5 |
artery | 4.09e-12 | 42 |
arterial blood vessel | 4.09e-12 | 42 |
arterial system | 4.09e-12 | 42 |
gingival epithelium | 1.99e-11 | 3 |
transitional epithelium | 1.79e-10 | 6 |
trunk blood vessel | 7.30e-09 | 7 |
brachiocephalic artery | 8.75e-09 | 2 |
brachiocephalic vasculature | 8.75e-09 | 2 |
skeletal muscle tissue | 1.41e-08 | 62 |
striated muscle tissue | 1.41e-08 | 62 |
myotome | 1.41e-08 | 62 |
carotid artery segment | 1.43e-08 | 2 |
muscle tissue | 3.23e-08 | 64 |
musculature | 3.23e-08 | 64 |
musculature of body | 3.23e-08 | 64 |
epithelial tube open at both ends | 8.10e-08 | 59 |
blood vessel | 8.10e-08 | 59 |
blood vasculature | 8.10e-08 | 59 |
vascular cord | 8.10e-08 | 59 |
testis | 1.02e-07 | 8 |
somite | 4.07e-07 | 71 |
presomitic mesoderm | 4.07e-07 | 71 |
presumptive segmental plate | 4.07e-07 | 71 |
dermomyotome | 4.07e-07 | 71 |
trunk paraxial mesoderm | 4.07e-07 | 71 |
paraxial mesoderm | 5.61e-07 | 72 |
presumptive paraxial mesoderm | 5.61e-07 | 72 |
dense mesenchyme tissue | 7.66e-07 | 73 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.