FFCP PHASE1:Hg19::chr18:29523191..29523206,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=22878|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=29169|TSSclassifier=S|UniProt=|association_with_transcript=-92bp_to_uc002kxd.3_5end|coexpression_cluster_id=C18|description=CAGE_peak_3_at_TRAPPC8_5end|id=chr18:29523191..29523206,-|ontology_enrichment_celltype=CL:0000084!4.14e-14!25;CL:0000827!4.14e-14!25;CL:0000791!1.50e-13!18;CL:0000789!1.50e-13!18;CL:0002420!1.50e-13!18;CL:0002419!1.50e-13!18;CL:0000790!1.50e-13!18;CL:0000838!1.53e-11!52;CL:0000542!1.98e-11!53;CL:0000051!1.98e-11!53;CL:0000625!7.70e-09!11|ontology_enrichment_celltype_v019=CL:0000791;3.79e-43;18!CL:0000789;3.79e-43;18!CL:0002419;3.79e-43;18!CL:0000084;3.58e-40;25!CL:0000625;9.26e-27;11!CL:0000624;1.14e-15;6!CL:0000542;3.60e-12;53!CL:0000898;5.98e-09;3!CL:0000623;1.65e-08;3|ontology_enrichment_celltype_v019_2=CL:0000791,2.12e-43,18;CL:0000789,2.12e-43,18;CL:0002420,2.12e-43,18;CL:0002419,2.12e-43,18;CL:0000790,2.12e-43,18;CL:0000084,4.20e-40,25;CL:0000827,4.20e-40,25;CL:0000625,6.72e-27,11;CL:0000838,4.38e-24,52;CL:0000542,1.71e-23,53;CL:0000051,1.71e-23,53;CL:0000624,9.67e-16,6;CL:0002087,1.52e-09,115;CL:0000738,2.61e-09,136;CL:0000898,6.12e-09,3;CL:0000623,1.50e-08,3;CL:0000825,1.50e-08,3;CL:0000037,2.24e-07,168;CL:0002031,2.66e-07,120|ontology_enrichment_development_v019=CL:0000790;3.79e-43;18!CL:0000051;3.60e-12;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!2.32e-14!115;UBERON:0002780!4.83e-10!41;UBERON:0001890!4.83e-10!41;UBERON:0006240!4.83e-10!41;UBERON:0003080!1.96e-09!42;UBERON:0001049!2.41e-08!57;UBERON:0005068!2.41e-08!57;UBERON:0006241!2.41e-08!57;UBERON:0007135!2.41e-08!57;UBERON:0000955!2.87e-08!69;UBERON:0006238!2.87e-08!69;UBERON:0001017!9.24e-08!82;UBERON:0001893!1.49e-07!34;UBERON:0001869!1.58e-07!32;UBERON:0002616!1.62e-07!59;UBERON:0002791!2.36e-07!33;UBERON:0005743!5.09e-07!86;UBERON:0002346!7.96e-07!90;UBERON:0002020!8.50e-07!34;UBERON:0003528!8.50e-07!34|ontology_enrichment_uberon_v019=UBERON:0000178;1.61e-11;15!UBERON:0000179;1.61e-11;15!UBERON:0000463;1.61e-11;15!UBERON:0002390;3.37e-09;32|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.49e-11,15;UBERON:0000179,1.49e-11,15;UBERON:0000463,1.49e-11,15;UBERON:0002370,3.00e-11,4;UBERON:0005058,3.00e-11,4;UBERON:0009113,3.00e-11,4;UBERON:0003295,3.00e-11,4;UBERON:0005562,3.00e-11,4;UBERON:0004177,3.05e-09,7;UBERON:0005057,3.05e-09,7;UBERON:0003351,1.84e-07,6|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0.261185628199839,0,0,0,0,0.123766352960047,0.331397375727916,0,0,0,0,0.123121058076788,0.612002073732759,0,0.85870796139317,0.273748850145768,0.627713197974014,0.229240217243854,0.164201178899891,0.314843125254717,0.393364276848904,1.15148819429164,0.464448369948228,0,0.30120591877825,0.369754010166788,0.387336002901508,0.568676929949686,0.293600439334847,1.10799081706375,0.200544447470142,0.651032612147555,0.223915474239924,0.647787332037959,0,0,0,0,0,0.411167888021826,0,0.28769239232215,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0.251248665256743,0,0,0,0,0.316462387440884,0,0,0,0.112328631146495,0.150176892841506,0,0,0,0,0,0.546138611262131,0,0,0,0.574752439954483,0.661044872784862,1.90810750907073,0.569212969109448,0.587237189370939,0,0,1.12101712596307,0.263384084775077,1.57367816091066,2.35806457649499,4.11202997999018,2.00623794468814,4.23698946623668,4.73447805734733,3.89653456815823,2.1167986808183,2.65145316727353,4.43067789167242,4.60366568400527,3.0741916734162,2.73124629875744,1.31550323682941,2.48715016007264,2.31842468588042,3.70716407905151,3.21048993707656,2.09071047609954,1.81294948316106,3.06576394881537,3.4362744548263,2.27717722817553,3.50421955756506,1.30216690771284,1.90090408889675,6.02300476311091,6.14335733541208,3.74792179657038,4.73554504088034,1.64225599384209,2.21767417547206,1.06976078313403,4.48955652036677,0,0,0,0,0,0,0,0,0.189069634328136,0.221729397462564,0.175669571386252,1.0478326039817,0.364295288292542,0,0.324547393654683,0.174129737299267,0,0.476981248610684,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0.33472061276467,0,0,0,0.367663080345869,0,0.0892997282840798,0,0,0,0,0,1.31780417436063,3.87780264148325,0,0.496971951695318,0.25326102332916,0,0.573673241497627,0.709336764396714,0,0,0.24666754841716,0.311211035399766,0,0.163461903113459,0.454072282934794,0,0,0.312160076830321,0,0,0.23486899728753,0.647491777472526,0.421352420106746,0,0,0.103325781175765,0,0.247266929278557,0.910161361938026,0,0.168336113954066,0.250237039743928,0.554128230968366,0,0,0.150238058906597,0,0.538168907066586,0,0,0.300091096084402,0.103052529238439,0,0.18611685633159,0.168776332241266,0.0974370051611986,0,0.184099797284599,0.323292113637624,0,0,0.508681776931463,0.193260853163297,0.272746120590835,0.286804595389004,0.975789649036763,0.662648841607426,0.929551542956147,0.518305275076852,0,0.72995471815166,0,0,0,0,0,0.236613600079688,0,0,0.110293972732394,0,0.4745412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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=22878 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29169 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-92bp_to_uc002kxd.3_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_3_at_TRAPPC8_5end | |||
|id=chr18:29523191..29523206,- | |||
|ontology_enrichment_celltype=CL:0000084!4.14e-14!25;CL:0000827!4.14e-14!25;CL:0000791!1.50e-13!18;CL:0000789!1.50e-13!18;CL:0002420!1.50e-13!18;CL:0002419!1.50e-13!18;CL:0000790!1.50e-13!18;CL:0000838!1.53e-11!52;CL:0000542!1.98e-11!53;CL:0000051!1.98e-11!53;CL:0000625!7.70e-09!11 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.79e-43;18!CL:0000789;3.79e-43;18!CL:0002419;3.79e-43;18!CL:0000084;3.58e-40;25!CL:0000625;9.26e-27;11!CL:0000624;1.14e-15;6!CL:0000542;3.60e-12;53!CL:0000898;5.98e-09;3!CL:0000623;1.65e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.12e-43,18;CL:0000789,2.12e-43,18;CL:0002420,2.12e-43,18;CL:0002419,2.12e-43,18;CL:0000790,2.12e-43,18;CL:0000084,4.20e-40,25;CL:0000827,4.20e-40,25;CL:0000625,6.72e-27,11;CL:0000838,4.38e-24,52;CL:0000542,1.71e-23,53;CL:0000051,1.71e-23,53;CL:0000624,9.67e-16,6;CL:0002087,1.52e-09,115;CL:0000738,2.61e-09,136;CL:0000898,6.12e-09,3;CL:0000623,1.50e-08,3;CL:0000825,1.50e-08,3;CL:0000037,2.24e-07,168;CL:0002031,2.66e-07,120 | |||
|ontology_enrichment_development_v019=CL:0000790;3.79e-43;18!CL:0000051;3.60e-12;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.32e-14!115;UBERON:0002780!4.83e-10!41;UBERON:0001890!4.83e-10!41;UBERON:0006240!4.83e-10!41;UBERON:0003080!1.96e-09!42;UBERON:0001049!2.41e-08!57;UBERON:0005068!2.41e-08!57;UBERON:0006241!2.41e-08!57;UBERON:0007135!2.41e-08!57;UBERON:0000955!2.87e-08!69;UBERON:0006238!2.87e-08!69;UBERON:0001017!9.24e-08!82;UBERON:0001893!1.49e-07!34;UBERON:0001869!1.58e-07!32;UBERON:0002616!1.62e-07!59;UBERON:0002791!2.36e-07!33;UBERON:0005743!5.09e-07!86;UBERON:0002346!7.96e-07!90;UBERON:0002020!8.50e-07!34;UBERON:0003528!8.50e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.61e-11;15!UBERON:0000179;1.61e-11;15!UBERON:0000463;1.61e-11;15!UBERON:0002390;3.37e-09;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.49e-11,15;UBERON:0000179,1.49e-11,15;UBERON:0000463,1.49e-11,15;UBERON:0002370,3.00e-11,4;UBERON:0005058,3.00e-11,4;UBERON:0009113,3.00e-11,4;UBERON:0003295,3.00e-11,4;UBERON:0005562,3.00e-11,4;UBERON:0004177,3.05e-09,7;UBERON:0005057,3.05e-09,7;UBERON:0003351,1.84e-07,6 | |||
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| |||
|short_description=p3@TRAPPC8 | |||
}} |
Revision as of 17:13, 11 September 2013
Short description: | p3@TRAPPC8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_TRAPPC8_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -92bp_to_uc002kxd.3_5end |
EntrezGene: | TRAPPC8 |
HGNC: | 29169 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.12e-43 | 18 |
alpha-beta T cell | 2.12e-43 | 18 |
immature T cell | 2.12e-43 | 18 |
mature T cell | 2.12e-43 | 18 |
immature alpha-beta T cell | 2.12e-43 | 18 |
T cell | 4.20e-40 | 25 |
pro-T cell | 4.20e-40 | 25 |
CD8-positive, alpha-beta T cell | 6.72e-27 | 11 |
lymphoid lineage restricted progenitor cell | 4.38e-24 | 52 |
lymphocyte | 1.71e-23 | 53 |
common lymphoid progenitor | 1.71e-23 | 53 |
CD4-positive, alpha-beta T cell | 9.67e-16 | 6 |
nongranular leukocyte | 1.52e-09 | 115 |
leukocyte | 2.61e-09 | 136 |
naive T cell | 6.12e-09 | 3 |
natural killer cell | 1.50e-08 | 3 |
pro-NK cell | 1.50e-08 | 3 |
hematopoietic stem cell | 2.24e-07 | 168 |
hematopoietic lineage restricted progenitor cell | 2.66e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
blood | 1.49e-11 | 15 |
haemolymphatic fluid | 1.49e-11 | 15 |
organism substance | 1.49e-11 | 15 |
thymus | 3.00e-11 | 4 |
hemolymphoid system gland | 3.00e-11 | 4 |
thymic region | 3.00e-11 | 4 |
pharyngeal gland | 3.00e-11 | 4 |
thymus primordium | 3.00e-11 | 4 |
hemopoietic organ | 3.05e-09 | 7 |
immune organ | 3.05e-09 | 7 |
pharyngeal epithelium | 1.84e-07 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.