FFCP PHASE1:Hg19::chr1:156052722..156052744,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr1:156052722..156052744,+|id=chr1:156052722..156052744,+|ontology_enrichment_celltype=CL:0002319!1.18e-12!25;CL:0000133!1.07e-10!59;CL:0000095!7.58e-10!17;CL:0000123!7.58e-10!17;CL:0000333!1.07e-08!41;CL:0000243!3.09e-08!15;CL:0000125!3.09e-08!15;CL:0000030!3.09e-08!15;CL:0000339!3.09e-08!15;CL:0000221!6.31e-08!71|ontology_enrichment_celltype_v019=CL:0002322;1.10e-17;5!CL:0002321;1.21e-13;15!CL:0002319;1.31e-13;25!CL:0000095;1.60e-13;17!CL:0000128;5.59e-12;7!CL:0000126;5.59e-12;7!CL:0000127;5.59e-12;7!CL:0002603;8.22e-11;3!CL:0000243;4.75e-09;15!CL:0000125;4.75e-09;15!CL:0000123;8.20e-09;2!CL:0000242;8.20e-09;2|ontology_enrichment_celltype_v019_2=CL:0000333,4.08e-22,41;CL:0000133,3.94e-20,59;CL:0002322,9.07e-18,5;CL:0000221,2.04e-17,72;CL:0000095,1.02e-13,17;CL:0000123,1.02e-13,17;CL:0002319,1.15e-13,25;CL:0000128,3.75e-12,7;CL:0000126,3.75e-12,7;CL:0000127,3.75e-12,7;CL:0002453,3.75e-12,7;CL:0002603,4.60e-11,3;CL:0000243,3.26e-09,15;CL:0000125,3.26e-09,15;CL:0000030,3.26e-09,15;CL:0000339,3.26e-09,15;CL:0000242,8.26e-09,2|ontology_enrichment_development_v019=CL:0000133;6.92e-10;59!CL:0000221;2.17e-09;72!CL:0000339;4.75e-09;15|ontology_enrichment_disease=DOID:3095!3.33e-09!22;DOID:2994!3.33e-09!22|ontology_enrichment_disease_v019=DOID:3095;2.86e-11;22!DOID:2994;2.86e-11;22!DOID:169;2.93e-09;6!DOID:171;2.68e-08;10|ontology_enrichment_disease_v019_2=DOID:3095,2.34e-11,22;DOID:2994,2.34e-11,22;DOID:169,3.53e-09,6;DOID:171,2.74e-08,10|ontology_enrichment_uberon=UBERON:0000073!8.33e-23!94;UBERON:0001016!8.33e-23!94;UBERON:0005743!7.42e-21!86;UBERON:0001017!4.66e-19!82;UBERON:0000924!5.73e-18!173;UBERON:0006601!5.73e-18!173;UBERON:0002346!7.93e-17!90;UBERON:0004121!1.34e-16!169;UBERON:0003075!2.58e-15!86;UBERON:0007284!2.58e-15!86;UBERON:0000955!2.97e-15!69;UBERON:0006238!2.97e-15!69;UBERON:0000033!1.22e-13!123;UBERON:0001049!4.49e-13!57;UBERON:0005068!4.49e-13!57;UBERON:0006241!4.49e-13!57;UBERON:0007135!4.49e-13!57;UBERON:0000153!2.64e-12!129;UBERON:0007811!2.64e-12!129;UBERON:0002616!5.69e-12!59;UBERON:0003056!3.60e-10!61;UBERON:0000119!2.87e-09!312;UBERON:0000468!3.53e-09!659;UBERON:0002020!6.77e-09!34;UBERON:0003528!6.77e-09!34;UBERON:0001869!8.58e-09!32;UBERON:0000922!1.02e-08!612;UBERON:0000483!1.24e-08!309;UBERON:0001893!2.14e-08!34;UBERON:0004111!2.18e-08!241;UBERON:0002780!4.68e-08!41;UBERON:0001890!4.68e-08!41;UBERON:0006240!4.68e-08!41;UBERON:0002791!5.47e-08!33;UBERON:0000025!9.68e-08!194;UBERON:0003080!1.21e-07!42;UBERON:0000956!1.25e-07!25;UBERON:0000203!1.25e-07!25;UBERON:0000467!1.40e-07!625;UBERON:0003076!1.72e-07!15;UBERON:0003057!1.72e-07!15;UBERON:0000480!1.81e-07!626;UBERON:0000477!1.99e-07!286;UBERON:0000475!2.02e-07!365;UBERON:0004733!2.09e-07!12;UBERON:0002028!2.09e-07!12;UBERON:0007277!2.09e-07!12;UBERON:0002050!7.63e-07!605;UBERON:0005423!7.63e-07!605|ontology_enrichment_uberon_v019=UBERON:0002037;2.11e-14;6!UBERON:0002680;1.68e-09;9!UBERON:0001895;1.68e-09;9!UBERON:0000922;2.86e-09;49!UBERON:0004733;4.81e-07;12!UBERON:0002028;4.81e-07;12|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.56e-14,6;UBERON:0006215,1.56e-14,6;UBERON:0004121,9.15e-12,171;UBERON:0000924,9.15e-12,171;UBERON:0006601,9.15e-12,171;UBERON:0001016,2.15e-10,89;UBERON:0002680,1.38e-09,9;UBERON:0001895,1.38e-09,9;UBERON:0010092,1.38e-09,9;UBERON:0010371,1.41e-08,104;UBERON:0001017,2.64e-08,81;UBERON:0003076,8.48e-08,15;UBERON:0003057,8.48e-08,15;UBERON:0002346,1.24e-07,86;UBERON:0003075,4.14e-07,82;UBERON:0007284,4.14e-07,82;UBERON:0004733,4.16e-07,12;UBERON:0002028,4.16e-07,12;UBERON:0007277,4.16e-07,12;UBERON:0000955,6.90e-07,68;UBERON:0006238,6.90e-07,68|phase1_expression=0,0,0.140954404095971,0,0.446961094427288,0,0,0.631719873426831,0,0.245733936501509,0,0.436882744260345,0,0.495065411840187,0,0.672325146451775,0.602694528023977,0,0.487932798790507,1.10808952269109,1.83600622119828,1.88072832886853,0.286235987131057,1.09499540058307,0.627713197974014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0.50133791063589,0.144846518960824,0,0,1.98523116044542,0.221729397462564,0.614843499851882,0.130979075497713,0,0,0,0.348259474598534,0.26591592103773,0,0,0,0.198762407366705,0,0,0.56530794192401,0.419499436209906,0,0.417989933073621,0.258416759169329,0.35576626268671,0.33472061276467,0.402829317109147,0.760272105718513,0.976248230192678,0,0,0.357198913136319,0.44905874525234,0.112611480483322,0,0.949265659568129,0.366403487860815,0,0,0,0,0,0.529636723252875,0.286836620748814,0,0,0,0,0.311211035399766,0.134710672069688,0.163461903113459,0.151357427644931,1.15235184896,0.70296429550139,0.312160076830321,0,0.1494486805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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr1:156052722..156052744,+ | |||
|id=chr1:156052722..156052744,+ | |||
|ontology_enrichment_celltype=CL:0002319!1.18e-12!25;CL:0000133!1.07e-10!59;CL:0000095!7.58e-10!17;CL:0000123!7.58e-10!17;CL:0000333!1.07e-08!41;CL:0000243!3.09e-08!15;CL:0000125!3.09e-08!15;CL:0000030!3.09e-08!15;CL:0000339!3.09e-08!15;CL:0000221!6.31e-08!71 | |||
|ontology_enrichment_celltype_v019=CL:0002322;1.10e-17;5!CL:0002321;1.21e-13;15!CL:0002319;1.31e-13;25!CL:0000095;1.60e-13;17!CL:0000128;5.59e-12;7!CL:0000126;5.59e-12;7!CL:0000127;5.59e-12;7!CL:0002603;8.22e-11;3!CL:0000243;4.75e-09;15!CL:0000125;4.75e-09;15!CL:0000123;8.20e-09;2!CL:0000242;8.20e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000333,4.08e-22,41;CL:0000133,3.94e-20,59;CL:0002322,9.07e-18,5;CL:0000221,2.04e-17,72;CL:0000095,1.02e-13,17;CL:0000123,1.02e-13,17;CL:0002319,1.15e-13,25;CL:0000128,3.75e-12,7;CL:0000126,3.75e-12,7;CL:0000127,3.75e-12,7;CL:0002453,3.75e-12,7;CL:0002603,4.60e-11,3;CL:0000243,3.26e-09,15;CL:0000125,3.26e-09,15;CL:0000030,3.26e-09,15;CL:0000339,3.26e-09,15;CL:0000242,8.26e-09,2 | |||
|ontology_enrichment_development_v019=CL:0000133;6.92e-10;59!CL:0000221;2.17e-09;72!CL:0000339;4.75e-09;15 | |||
|ontology_enrichment_disease=DOID:3095!3.33e-09!22;DOID:2994!3.33e-09!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;2.86e-11;22!DOID:2994;2.86e-11;22!DOID:169;2.93e-09;6!DOID:171;2.68e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,2.34e-11,22;DOID:2994,2.34e-11,22;DOID:169,3.53e-09,6;DOID:171,2.74e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0000073!8.33e-23!94;UBERON:0001016!8.33e-23!94;UBERON:0005743!7.42e-21!86;UBERON:0001017!4.66e-19!82;UBERON:0000924!5.73e-18!173;UBERON:0006601!5.73e-18!173;UBERON:0002346!7.93e-17!90;UBERON:0004121!1.34e-16!169;UBERON:0003075!2.58e-15!86;UBERON:0007284!2.58e-15!86;UBERON:0000955!2.97e-15!69;UBERON:0006238!2.97e-15!69;UBERON:0000033!1.22e-13!123;UBERON:0001049!4.49e-13!57;UBERON:0005068!4.49e-13!57;UBERON:0006241!4.49e-13!57;UBERON:0007135!4.49e-13!57;UBERON:0000153!2.64e-12!129;UBERON:0007811!2.64e-12!129;UBERON:0002616!5.69e-12!59;UBERON:0003056!3.60e-10!61;UBERON:0000119!2.87e-09!312;UBERON:0000468!3.53e-09!659;UBERON:0002020!6.77e-09!34;UBERON:0003528!6.77e-09!34;UBERON:0001869!8.58e-09!32;UBERON:0000922!1.02e-08!612;UBERON:0000483!1.24e-08!309;UBERON:0001893!2.14e-08!34;UBERON:0004111!2.18e-08!241;UBERON:0002780!4.68e-08!41;UBERON:0001890!4.68e-08!41;UBERON:0006240!4.68e-08!41;UBERON:0002791!5.47e-08!33;UBERON:0000025!9.68e-08!194;UBERON:0003080!1.21e-07!42;UBERON:0000956!1.25e-07!25;UBERON:0000203!1.25e-07!25;UBERON:0000467!1.40e-07!625;UBERON:0003076!1.72e-07!15;UBERON:0003057!1.72e-07!15;UBERON:0000480!1.81e-07!626;UBERON:0000477!1.99e-07!286;UBERON:0000475!2.02e-07!365;UBERON:0004733!2.09e-07!12;UBERON:0002028!2.09e-07!12;UBERON:0007277!2.09e-07!12;UBERON:0002050!7.63e-07!605;UBERON:0005423!7.63e-07!605 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;2.11e-14;6!UBERON:0002680;1.68e-09;9!UBERON:0001895;1.68e-09;9!UBERON:0000922;2.86e-09;49!UBERON:0004733;4.81e-07;12!UBERON:0002028;4.81e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.56e-14,6;UBERON:0006215,1.56e-14,6;UBERON:0004121,9.15e-12,171;UBERON:0000924,9.15e-12,171;UBERON:0006601,9.15e-12,171;UBERON:0001016,2.15e-10,89;UBERON:0002680,1.38e-09,9;UBERON:0001895,1.38e-09,9;UBERON:0010092,1.38e-09,9;UBERON:0010371,1.41e-08,104;UBERON:0001017,2.64e-08,81;UBERON:0003076,8.48e-08,15;UBERON:0003057,8.48e-08,15;UBERON:0002346,1.24e-07,86;UBERON:0003075,4.14e-07,82;UBERON:0007284,4.14e-07,82;UBERON:0004733,4.16e-07,12;UBERON:0002028,4.16e-07,12;UBERON:0007277,4.16e-07,12;UBERON:0000955,6.90e-07,68;UBERON:0006238,6.90e-07,68 | |||
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| |||
|short_description=p@chr1:156052722..156052744,+ | |||
}} |
Revision as of 00:49, 12 September 2013
Short description: | p@chr1:156052722..156052744, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:156052722..156052744, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
migratory neural crest cell | 4.08e-22 | 41 |
neurectodermal cell | 3.94e-20 | 59 |
embryonic stem cell | 9.07e-18 | 5 |
ectodermal cell | 2.04e-17 | 72 |
neuron associated cell | 1.02e-13 | 17 |
neuron associated cell (sensu Vertebrata) | 1.02e-13 | 17 |
neural cell | 1.15e-13 | 25 |
oligodendrocyte | 3.75e-12 | 7 |
macroglial cell | 3.75e-12 | 7 |
astrocyte | 3.75e-12 | 7 |
oligodendrocyte precursor cell | 3.75e-12 | 7 |
astrocyte of the cerebellum | 4.60e-11 | 3 |
glial cell (sensu Vertebrata) | 3.26e-09 | 15 |
glial cell | 3.26e-09 | 15 |
glioblast | 3.26e-09 | 15 |
glioblast (sensu Vertebrata) | 3.26e-09 | 15 |
Merkel cell | 8.26e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 1.56e-14 | 6 |
rhombic lip | 1.56e-14 | 6 |
ectoderm-derived structure | 9.15e-12 | 171 |
ectoderm | 9.15e-12 | 171 |
presumptive ectoderm | 9.15e-12 | 171 |
nervous system | 2.15e-10 | 89 |
regional part of metencephalon | 1.38e-09 | 9 |
metencephalon | 1.38e-09 | 9 |
future metencephalon | 1.38e-09 | 9 |
ecto-epithelium | 1.41e-08 | 104 |
central nervous system | 2.64e-08 | 81 |
posterior neural tube | 8.48e-08 | 15 |
chordal neural plate | 8.48e-08 | 15 |
neurectoderm | 1.24e-07 | 86 |
neural plate | 4.14e-07 | 82 |
presumptive neural plate | 4.14e-07 | 82 |
segmental subdivision of hindbrain | 4.16e-07 | 12 |
hindbrain | 4.16e-07 | 12 |
presumptive hindbrain | 4.16e-07 | 12 |
brain | 6.90e-07 | 68 |
future brain | 6.90e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.34e-11 | 22 |
germ cell cancer | 2.34e-11 | 22 |
neuroendocrine tumor | 3.53e-09 | 6 |
neuroectodermal tumor | 2.74e-08 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.