FFCP PHASE1:Hg19::chr22:39916888..39916894,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=468|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=786|TSSclassifier=S|UniProt=P18848,Q96AQ3|association_with_transcript=319bp_to_ENST00000337304,NM_001675,uc003aya.2_5end|coexpression_cluster_id=C173|description=CAGE_peak_12_at_ATF4_5end|id=chr22:39916888..39916894,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002521;3.37e-25;3!CL:0000136;1.07e-22;13!CL:0002617;1.57e-10;2!CL:0002615;2.63e-07;3!CL:0002592;2.63e-07;3|ontology_enrichment_celltype_v019_2=CL:0002521,4.87e-25,3;CL:0000136,9.42e-20,15;CL:0002617,1.57e-10,2;CL:0002615,2.05e-07,3;CL:0002592,2.19e-07,3|ontology_enrichment_development_v019=UBERON:0005425;2.71e-19;1!UBERON:0003056;2.63e-07;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0060084;2.63e-07;3!DOID:127;2.63e-07;3|ontology_enrichment_disease_v019_2=DOID:0060084,2.97e-07,3;DOID:127,2.97e-07,3|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0002190;3.37e-25;3!UBERON:0000941;2.71e-19;1!UBERON:0001785;2.71e-19;1!UBERON:0002464;2.71e-19;1!UBERON:0004904;2.71e-19;1!UBERON:0001021;2.71e-19;1!UBERON:0002072;1.51e-15;5!UBERON:0003714;2.48e-10;2!UBERON:0005162;2.48e-10;2!UBERON:0000122;2.48e-10;2!UBERON:0003498;2.63e-07;3!UBERON:0005985;2.63e-07;3!UBERON:0001621;2.63e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0002190,4.87e-25,3;UBERON:0000941,1.88e-19,1;UBERON:0001785,1.88e-19,1;UBERON:0002464,1.88e-19,1;UBERON:0004904,1.88e-19,1;UBERON:0001021,1.88e-19,1;UBERON:0003902,1.88e-19,1;UBERON:0005425,1.88e-19,1;UBERON:0002072,1.88e-15,5;UBERON:0003714,2.07e-10,2;UBERON:0005162,2.07e-10,2;UBERON:0000122,2.07e-10,2;UBERON:0001621,2.19e-07,3|phase1_expression=0,8.34992043174834,0.845726424575827,0,1.78784437770915,0,10.1319951267324,0.631719873426831,1.04474251279935,0,0,0,0,0,0,0,0.602694528023977,0,0.487932798790507,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0.154816123316076,0,0.30120591877825,0.369754010166788,0.154934401160603,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0.411167888021826,0.619412741790207,0.28769239232215,0.256160706529101,0.236482229888585,0.344745680736619,0,1.35426486594342,0.188242339542605,0.818718450173537,0.449446968890169,0,0,0,0.329851300186716,0,0,0.580418477257168,0.56738522469114,0.622822248995575,0,0,0,0.605399502633369,0.368277635987565,1.26584954976354,0,0,0,0,0,0,0,0.39783335439818,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.973269740605272,0.0945348171640679,0.221729397462564,0,0,0,0,0,0.348259474598534,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0.312160076830321,0,0.149448680551801,0,0,0,0.204154171254893,0,0,0,0,0,0.718618141816238,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0.184099797284599,0,0,0,0,0,0,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0.721879481669586,0,0.337169380156203,0.482022059766964,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,1.1240175325762,0.201057944823262,0,0,0,0,0,0,0.144366447761074,0,0,0.790204397959275,0,0,0,0.297262324577456,0.93733833986777,0,0.141775097242386,0.179117045405697,0,0,0.492663237895943,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.434343920002738,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.415941723061614,0,0.157702415033935,0,0,0,1.03473071292505,0,0,0.173767228936166,0,0,0.206768026122887,0,0,0.909382714338778,0,0,0,0,0.280660094433074,0.128139149255701,0,0,0,0,0,0,0,0.116210378459959,0,0.40101294060657,0.184161977871793,0.114814448164607,0,0,0,0,0.784349769176855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0,0,0,0.137836572484531,0,0,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0.286249773483982,0,0,0,0,0,0,0,0,0,0,0.202182481573316,1.58510321173008,0,0,0,0,0,0,0,0,0,0.438450885253763,0.578775534266688,0,0.202910376962704,0,0,0,0,0.7133421029625,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0.144269212976445,0.0711418433484141,0,0.199579371432817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,0.47748896947538,0,0,0,0,0.667852230137435,0,0,0,0,0,0,0,0,0.179736702294654,0.179021174675609,0,0,0,0,0,0,0,0,0.0874599999961957,0,0,0,0.472775363535873,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0.179515288819544,0,0.31900115973192,0,0,0,0,0.166211681900156,0,0,0,0,0,0,0,0,0,0,0,0,0.889563386041866,0.123563938946503,0.208843899010911,0,0,0,0.364909578431332,0,0.242780379534093,0,0,0,0,0.450970258243478,0.103688191397247,0,0,0.313932918407225,0,0,0.138674673013139,0,0.195984794828755,0.0870592065804026,0,0,0.387025325156341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124252535565433,0,0,0.104602846312333,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=468 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=786 | |||
|TSSclassifier=S | |||
|UniProt=P18848,Q96AQ3 | |||
|association_with_transcript=319bp_to_ENST00000337304,NM_001675,uc003aya.2_5end | |||
|coexpression_cluster_id=C173 | |||
|description=CAGE_peak_12_at_ATF4_5end | |||
|id=chr22:39916888..39916894,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002521;3.37e-25;3!CL:0000136;1.07e-22;13!CL:0002617;1.57e-10;2!CL:0002615;2.63e-07;3!CL:0002592;2.63e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002521,4.87e-25,3;CL:0000136,9.42e-20,15;CL:0002617,1.57e-10,2;CL:0002615,2.05e-07,3;CL:0002592,2.19e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0005425;2.71e-19;1!UBERON:0003056;2.63e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;2.63e-07;3!DOID:127;2.63e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,2.97e-07,3;DOID:127,2.97e-07,3 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002190;3.37e-25;3!UBERON:0000941;2.71e-19;1!UBERON:0001785;2.71e-19;1!UBERON:0002464;2.71e-19;1!UBERON:0004904;2.71e-19;1!UBERON:0001021;2.71e-19;1!UBERON:0002072;1.51e-15;5!UBERON:0003714;2.48e-10;2!UBERON:0005162;2.48e-10;2!UBERON:0000122;2.48e-10;2!UBERON:0003498;2.63e-07;3!UBERON:0005985;2.63e-07;3!UBERON:0001621;2.63e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002190,4.87e-25,3;UBERON:0000941,1.88e-19,1;UBERON:0001785,1.88e-19,1;UBERON:0002464,1.88e-19,1;UBERON:0004904,1.88e-19,1;UBERON:0001021,1.88e-19,1;UBERON:0003902,1.88e-19,1;UBERON:0005425,1.88e-19,1;UBERON:0002072,1.88e-15,5;UBERON:0003714,2.07e-10,2;UBERON:0005162,2.07e-10,2;UBERON:0000122,2.07e-10,2;UBERON:0001621,2.19e-07,3 | |||
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|short_description=p12@ATF4 | |||
}} |
Revision as of 12:04, 12 September 2013
Short description: | p12@ATF4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_ATF4_5end |
Coexpression cluster: | C173_Adipocyte_mature_skin_left_Hepatocyte_Osteoblast_adipose |
Association with transcript: | 319bp_to_ENST00000337304, NM_001675, uc003aya.2_5end |
EntrezGene: | ATF4 |
HGNC: | 786 |
UniProt: | P18848Q96AQ3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
subcutaneous fat cell | 4.87e-25 | 3 |
fat cell | 9.42e-20 | 15 |
adipocyte of breast | 1.57e-10 | 2 |
adipocyte of omentum tissue | 2.05e-07 | 3 |
smooth muscle cell of the coronary artery | 2.19e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
subcutaneous adipose tissue | 4.87e-25 | 3 |
cranial nerve II | 1.88e-19 | 1 |
cranial nerve | 1.88e-19 | 1 |
nerve trunk | 1.88e-19 | 1 |
nerve connecting eye with brain | 1.88e-19 | 1 |
nerve | 1.88e-19 | 1 |
retinal neural layer | 1.88e-19 | 1 |
presumptive neural retina | 1.88e-19 | 1 |
hypodermis | 1.88e-15 | 5 |
neural tissue | 2.07e-10 | 2 |
multi cell component structure | 2.07e-10 | 2 |
neuron projection bundle | 2.07e-10 | 2 |
coronary artery | 2.19e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 2.97e-07 | 3 |
leiomyoma | 2.97e-07 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.