FFCP PHASE1:Hg19::chr2:47335892..47335907,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=801,805,808|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1442,1445,1449|TSSclassifier=S|UniProt=|association_with_transcript=16bp_to_ENST00000464527_5end|description=CAGE_peak_29_at_CALM2_5end,CAGE_peak_35_at_CALM3_5end,CAGE_peak_51_at_CALM1_5end|id=chr2:47335892..47335907,-|ontology_enrichment_celltype=CL:0000066!1.69e-14!254;CL:0002178!5.35e-13!3;CL:0002251!1.18e-10!21;CL:0002076!1.48e-10!43;CL:0000244!9.48e-10!4;CL:0000731!9.48e-10!4;CL:0002536!2.06e-08!2;CL:0000223!2.24e-08!59|ontology_enrichment_celltype_v019=CL:0002178;1.04e-17;3!CL:0000244;3.02e-13;4!CL:0000731;3.02e-13;4!CL:1000415;1.87e-07;2|ontology_enrichment_celltype_v019_2=CL:0002178,1.18e-17,3;CL:0000244,3.64e-13,4;CL:0000731,3.64e-13,4;CL:0000066,8.01e-11,253;CL:1000415,1.45e-07,2;CL:0002076,2.28e-07,42;CL:0000223,2.29e-07,58|ontology_enrichment_development_v019=UBERON:0001041;5.93e-07;30|ontology_enrichment_disease=DOID:305!1.55e-20!106;DOID:299!2.65e-17!25;DOID:0050687!1.04e-14!143;DOID:1749!9.74e-13!14;DOID:162!4.62e-11!235;DOID:14566!1.14e-10!239;DOID:3493!3.43e-09!2;DOID:3908!3.27e-08!5|ontology_enrichment_disease_v019=DOID:3908;2.04e-23;5!DOID:4556;6.79e-18;3!DOID:299;1.14e-17;25!DOID:1799;1.25e-13;1!DOID:10165;1.25e-13;1!DOID:3111;1.25e-13;1!DOID:1798;1.25e-13;1!DOID:3603;1.25e-13;1!DOID:3905;2.68e-13;9!DOID:305;9.37e-10;106!DOID:3119;1.09e-08;14!DOID:1749;1.09e-08;14!DOID:1324;3.39e-08;15!DOID:3493;9.55e-08;2!DOID:0050615;1.03e-07;16!DOID:3910;1.16e-07;2!DOID:4929;1.16e-07;2|ontology_enrichment_disease_v019_2=DOID:3908,1.90e-23,5;DOID:305,2.16e-21,106;DOID:4556,7.09e-18,3;DOID:299,1.20e-17,25;DOID:0050687,1.98e-15,143;DOID:3111,9.73e-14,1;DOID:3603,9.73e-14,1;DOID:1799,2.07e-13,1;DOID:10165,2.07e-13,1;DOID:1798,2.07e-13,1;DOID:3905,2.57e-13,9;DOID:1749,1.09e-08,14;DOID:3119,1.18e-08,14;DOID:162,1.20e-08,235;DOID:14566,1.98e-08,239;DOID:1324,3.30e-08,15;DOID:3493,9.25e-08,2;DOID:0050615,1.00e-07,16;DOID:3910,1.05e-07,2;DOID:4929,1.28e-07,2|ontology_enrichment_uberon=UBERON:0003343!5.44e-09!4;UBERON:0004785!5.44e-09!4;UBERON:0000305!7.22e-09!7;UBERON:0005911!1.42e-08!82;UBERON:0000365!7.10e-08!5;UBERON:0000344!7.54e-08!12;UBERON:0004871!9.15e-08!8;UBERON:0004119!1.90e-07!169;UBERON:0000925!1.90e-07!169;UBERON:0006595!1.90e-07!169;UBERON:0003729!2.82e-07!5|ontology_enrichment_uberon_v019=UBERON:0002294;1.47e-16;7!UBERON:0001173;1.47e-16;7!UBERON:0004913;4.83e-14;1!UBERON:0003703;4.83e-14;1!UBERON:0001174;4.83e-14;1!UBERON:0004914;4.83e-14;1!UBERON:0002394;1.89e-13;4!UBERON:0003928;1.89e-13;4!UBERON:0000058;6.74e-12;10!UBERON:0000945;5.16e-11;5!UBERON:0010039;5.16e-11;5!UBERON:0000365;8.71e-11;5!UBERON:0005910;3.86e-09;6!UBERON:0004903;1.16e-07;2!UBERON:0002173;1.16e-07;2!UBERON:0002186;1.16e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0004913,5.85e-14,1;UBERON:0003703,5.85e-14,1;UBERON:0001174,5.85e-14,1;UBERON:0004914,5.85e-14,1;UBERON:0002294,4.06e-13,9;UBERON:0001173,4.06e-13,9;UBERON:0004912,4.06e-13,9;UBERON:0000365,1.01e-10,5;UBERON:0002394,2.66e-09,6;UBERON:0003928,2.66e-09,6;UBERON:0005910,4.37e-09,6;UBERON:0005911,6.15e-09,82;UBERON:0004119,5.42e-08,160;UBERON:0000925,5.42e-08,160;UBERON:0006595,5.42e-08,160;UBERON:0004903,1.05e-07,2;UBERON:0002173,1.05e-07,2;UBERON:0002186,1.05e-07,2;UBERON:0000945,3.45e-07,8;UBERON:0010039,3.45e-07,8|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860919069801795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.86101074534246,0,1.33029046061003,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.55567026775618,0,0,0,0,0,0.296964680832639,0.614321404198464,0,0,0,0,0,0,0,0,0,0,0,1.52776196950456,0,0,0,0,0,0,0,0,0,0,0,0,3.81380475439149,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897576444097721,0,0.31900115973192,0,0,0,0,0,0,0,0.167821586975843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174118413160805,0,0,0,0.0730893170861856,0,0,0,0,0,0,0,1.75996244461323,0,0,1.19885765749278,0.72045208577053,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=801,805,808 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1442,1445,1449 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=16bp_to_ENST00000464527_5end | |||
|description=CAGE_peak_29_at_CALM2_5end,CAGE_peak_35_at_CALM3_5end,CAGE_peak_51_at_CALM1_5end | |||
|id=chr2:47335892..47335907,- | |||
|ontology_enrichment_celltype=CL:0000066!1.69e-14!254;CL:0002178!5.35e-13!3;CL:0002251!1.18e-10!21;CL:0002076!1.48e-10!43;CL:0000244!9.48e-10!4;CL:0000731!9.48e-10!4;CL:0002536!2.06e-08!2;CL:0000223!2.24e-08!59 | |||
|ontology_enrichment_celltype_v019=CL:0002178;1.04e-17;3!CL:0000244;3.02e-13;4!CL:0000731;3.02e-13;4!CL:1000415;1.87e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002178,1.18e-17,3;CL:0000244,3.64e-13,4;CL:0000731,3.64e-13,4;CL:0000066,8.01e-11,253;CL:1000415,1.45e-07,2;CL:0002076,2.28e-07,42;CL:0000223,2.29e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0001041;5.93e-07;30 | |||
|ontology_enrichment_disease=DOID:305!1.55e-20!106;DOID:299!2.65e-17!25;DOID:0050687!1.04e-14!143;DOID:1749!9.74e-13!14;DOID:162!4.62e-11!235;DOID:14566!1.14e-10!239;DOID:3493!3.43e-09!2;DOID:3908!3.27e-08!5 | |||
|ontology_enrichment_disease_v019=DOID:3908;2.04e-23;5!DOID:4556;6.79e-18;3!DOID:299;1.14e-17;25!DOID:1799;1.25e-13;1!DOID:10165;1.25e-13;1!DOID:3111;1.25e-13;1!DOID:1798;1.25e-13;1!DOID:3603;1.25e-13;1!DOID:3905;2.68e-13;9!DOID:305;9.37e-10;106!DOID:3119;1.09e-08;14!DOID:1749;1.09e-08;14!DOID:1324;3.39e-08;15!DOID:3493;9.55e-08;2!DOID:0050615;1.03e-07;16!DOID:3910;1.16e-07;2!DOID:4929;1.16e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3908,1.90e-23,5;DOID:305,2.16e-21,106;DOID:4556,7.09e-18,3;DOID:299,1.20e-17,25;DOID:0050687,1.98e-15,143;DOID:3111,9.73e-14,1;DOID:3603,9.73e-14,1;DOID:1799,2.07e-13,1;DOID:10165,2.07e-13,1;DOID:1798,2.07e-13,1;DOID:3905,2.57e-13,9;DOID:1749,1.09e-08,14;DOID:3119,1.18e-08,14;DOID:162,1.20e-08,235;DOID:14566,1.98e-08,239;DOID:1324,3.30e-08,15;DOID:3493,9.25e-08,2;DOID:0050615,1.00e-07,16;DOID:3910,1.05e-07,2;DOID:4929,1.28e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0003343!5.44e-09!4;UBERON:0004785!5.44e-09!4;UBERON:0000305!7.22e-09!7;UBERON:0005911!1.42e-08!82;UBERON:0000365!7.10e-08!5;UBERON:0000344!7.54e-08!12;UBERON:0004871!9.15e-08!8;UBERON:0004119!1.90e-07!169;UBERON:0000925!1.90e-07!169;UBERON:0006595!1.90e-07!169;UBERON:0003729!2.82e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0002294;1.47e-16;7!UBERON:0001173;1.47e-16;7!UBERON:0004913;4.83e-14;1!UBERON:0003703;4.83e-14;1!UBERON:0001174;4.83e-14;1!UBERON:0004914;4.83e-14;1!UBERON:0002394;1.89e-13;4!UBERON:0003928;1.89e-13;4!UBERON:0000058;6.74e-12;10!UBERON:0000945;5.16e-11;5!UBERON:0010039;5.16e-11;5!UBERON:0000365;8.71e-11;5!UBERON:0005910;3.86e-09;6!UBERON:0004903;1.16e-07;2!UBERON:0002173;1.16e-07;2!UBERON:0002186;1.16e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004913,5.85e-14,1;UBERON:0003703,5.85e-14,1;UBERON:0001174,5.85e-14,1;UBERON:0004914,5.85e-14,1;UBERON:0002294,4.06e-13,9;UBERON:0001173,4.06e-13,9;UBERON:0004912,4.06e-13,9;UBERON:0000365,1.01e-10,5;UBERON:0002394,2.66e-09,6;UBERON:0003928,2.66e-09,6;UBERON:0005910,4.37e-09,6;UBERON:0005911,6.15e-09,82;UBERON:0004119,5.42e-08,160;UBERON:0000925,5.42e-08,160;UBERON:0006595,5.42e-08,160;UBERON:0004903,1.05e-07,2;UBERON:0002173,1.05e-07,2;UBERON:0002186,1.05e-07,2;UBERON:0000945,3.45e-07,8;UBERON:0010039,3.45e-07,8 | |||
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|short_description=p29@CALM2,p35@CALM3,p51@CALM1 | |||
}} |
Revision as of 18:50, 12 September 2013
Short description: | p29@CALM2, p35@CALM3, p51@CALM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_29_at_CALM2_5end, CAGE_peak_35_at_CALM3_5end, CAGE_peak_51_at_CALM1_5end |
Coexpression cluster: | NA |
Association with transcript: | 16bp_to_ENST00000464527_5end |
EntrezGene: | 801,805,808 |
HGNC: | 1445, 1449&submit=Submit 1442, 1445, 1449 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 1.18e-17 | 3 |
transitional epithelial cell | 3.64e-13 | 4 |
urothelial cell | 3.64e-13 | 4 |
epithelial cell | 8.01e-11 | 253 |
epithelial cell of gall bladder | 1.45e-07 | 2 |
endo-epithelial cell | 2.28e-07 | 42 |
endodermal cell | 2.29e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
hepatopancreatic ampulla | 5.85e-14 | 1 |
extrahepatic bile duct | 5.85e-14 | 1 |
common bile duct | 5.85e-14 | 1 |
duodenal papilla | 5.85e-14 | 1 |
biliary system | 4.06e-13 | 9 |
biliary tree | 4.06e-13 | 9 |
biliary bud | 4.06e-13 | 9 |
urothelium | 1.01e-10 | 5 |
bile duct | 2.66e-09 | 6 |
digestive system duct | 2.66e-09 | 6 |
transitional epithelium | 4.37e-09 | 6 |
endo-epithelium | 6.15e-09 | 82 |
endoderm-derived structure | 5.42e-08 | 160 |
endoderm | 5.42e-08 | 160 |
presumptive endoderm | 5.42e-08 | 160 |
bronchoalveolar duct junction | 1.05e-07 | 2 |
alveolar duct | 1.05e-07 | 2 |
bronchiole | 1.05e-07 | 2 |
stomach | 3.45e-07 | 8 |
food storage organ | 3.45e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
non-small cell lung carcinoma | 1.90e-23 | 5 |
carcinoma | 2.16e-21 | 106 |
lung large cell carcinoma | 7.09e-18 | 3 |
adenocarcinoma | 1.20e-17 | 25 |
cell type cancer | 1.98e-15 | 143 |
cystadenocarcinoma | 9.73e-14 | 1 |
mucinous cystadenocarcinoma | 9.73e-14 | 1 |
islet cell tumor | 2.07e-13 | 1 |
endocrine pancreas cancer | 2.07e-13 | 1 |
pancreatic endocrine carcinoma | 2.07e-13 | 1 |
lung carcinoma | 2.57e-13 | 9 |
squamous cell carcinoma | 1.09e-08 | 14 |
gastrointestinal system cancer | 1.18e-08 | 14 |
cancer | 1.20e-08 | 235 |
disease of cellular proliferation | 1.98e-08 | 239 |
lung cancer | 3.30e-08 | 15 |
signet ring cell adenocarcinoma | 9.25e-08 | 2 |
respiratory system cancer | 1.00e-07 | 16 |
lung adenocarcinoma | 1.05e-07 | 2 |
tubular adenocarcinoma | 1.28e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.