FFCP PHASE1:Hg19::chr2:74781828..74781898,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1796|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2990|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000340004,ENST00000474924,ENST00000475191,ENST00000480318,ENST00000482206,ENST00000489958,ENST00000496966,uc002sms.2,uc002smt.2,uc002smu.2,uc010ffo.2,uc010yrz.1_5end|description=CAGE_peak_1_at_DOK1_5end|id=chr2:74781828..74781898,+|ontology_enrichment_celltype=CL:0000048!7.51e-48!430;CL:0000723!2.74e-44!436;CL:0000034!5.35e-43!444;CL:0002320!1.37e-42!365;CL:0000134!5.15e-39!358;CL:0000219!2.29e-32!390;CL:0002371!2.92e-22!591;CL:0000144!1.94e-18!625;CL:0000988!4.76e-16!182;CL:0002032!2.92e-14!165;CL:0000837!2.92e-14!165;CL:0000037!3.84e-14!172;CL:0000566!3.84e-14!172;CL:0000055!1.75e-13!180;CL:0000763!3.20e-12!112;CL:0000049!3.20e-12!112;CL:0000003!1.83e-11!722;CL:0000738!6.32e-11!140;CL:0000057!1.73e-10!75;CL:0002031!1.93e-09!124;CL:0000766!5.69e-09!76;CL:0000557!3.14e-08!71;CL:0002087!3.75e-08!119;CL:0000839!2.62e-07!70;CL:0000012!5.19e-07!682;CL:0000548!6.42e-07!679;CL:0000004!6.42e-07!679;CL:0000255!6.42e-07!679;CL:0000183!6.60e-07!59|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0000048,2.25e-50,427;CL:0000723,1.29e-46,433;CL:0000034,2.81e-45,441;CL:0002320,4.98e-45,361;CL:0000134,2.35e-41,354;CL:0000219,1.98e-34,386;CL:0000988,1.44e-17,177;CL:0002032,9.81e-16,161;CL:0000837,9.81e-16,161;CL:0000037,1.42e-15,168;CL:0000763,6.50e-14,108;CL:0000049,6.50e-14,108;CL:0000738,2.78e-12,136;CL:0002031,9.27e-11,120;CL:0000057,9.69e-11,76;CL:0000766,1.03e-10,72;CL:0000557,6.09e-10,67;CL:0002087,2.25e-09,115;CL:0000839,6.78e-09,66;CL:0002009,6.65e-08,61;CL:0002194,1.04e-07,59;CL:0000576,1.04e-07,59;CL:0000040,1.04e-07,59;CL:0000559,1.04e-07,59|ontology_enrichment_development_v019=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002384!5.33e-44!375;UBERON:0003081!7.66e-17!216;UBERON:0002204!1.52e-16!167;UBERON:0002390!8.56e-15!102;UBERON:0003061!8.56e-15!102;UBERON:0002193!8.66e-14!112;UBERON:0004765!4.96e-11!101;UBERON:0001434!4.96e-11!101;UBERON:0002371!1.28e-10!80;UBERON:0001474!1.53e-10!86;UBERON:0002405!4.98e-07!115;UBERON:0004535!5.95e-07!110|ontology_enrichment_uberon_v019=UBERON:0002390;1.79e-07;32|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.97e-46,371;UBERON:0002204,3.08e-19,167;UBERON:0003081,2.43e-17,203;UBERON:0002390,7.78e-17,98;UBERON:0003061,7.78e-17,98;UBERON:0002193,1.26e-15,108;UBERON:0000926,3.77e-14,315;UBERON:0004120,3.77e-14,315;UBERON:0006603,3.77e-14,315;UBERON:0001434,1.28e-13,100;UBERON:0004765,1.55e-12,90;UBERON:0002371,1.62e-12,76;UBERON:0001474,2.42e-12,82;UBERON:0002405,3.63e-12,93;UBERON:0000479,2.53e-08,773;UBERON:0007503,1.59e-07,78;UBERON:0004535,7.59e-07,109|phase1_expression=14.7159487209151,11.3473277662221,10.7125347112938,21.0153926541574,13.8557939272459,8.72338524100369,27.8629865985142,11.370957721683,8.88031135879451,9.33788958705734,25.1208420470074,1.09220686065086,1.84636884759917,16.2133922377661,33.4711349485195,6.05092631806598,6.02694528023977,5.84248072309899,3.41552959153355,8.00286877499121,25.0920850230431,7.20945859399602,4.29353980696585,4.92747930262383,5.77496142136093,11.0799438334529,10.2625736812432,9.05173985107311,8.65401409067589,6.90892916574983,7.43117391917165,2.75826367343678,2.71085326900425,0.369754010166788,1.23947520928483,0.142169232487422,12.0376180127287,2.21598163412751,1.80490002723128,2.60413044859022,24.8546176406316,27.8548552776322,29.3636147102973,28.2072583232356,20.0274250155069,31.5359279544161,12.7835970298127,5.34518254428373,7.74265927237759,4.89077066947656,3.33008918487831,6.62150243688039,6.55016793399575,3.87290810150296,6.77132432971709,13.1769637679823,15.5556505532972,13.0339620978149,5.20342617030534,6.41858054152187,3.19668562899521,13.1940520074686,8.37747362010854,5.54092175692502,3.48251086354301,1.70215567407342,3.73693349397345,6.02996796616184,11.4726242052444,5.86409880703815,4.84319602106695,1.84138817993782,4.1140110367315,19.4354863406986,20.6226170966092,19.9175713232957,19.2081959260507,21.9258263548599,16.8761866031934,21.3759557805936,21.8808344918999,23.5636758356378,26.3994366691984,21.8455444504853,20.4587128388618,18.7761297929263,17.6174234295845,18.9668305184979,23.797615420255,25.7594513724548,1.1384259382189,3.52342313622563,3.82273228125229,3.96513985737078,3.92355994087075,15.8030450865046,3.73748563216283,3.14408610199332,3.49522548299166,17.3873955206305,5.86660079940463,8.04861269749047,9.74133642039557,18.4941358429388,8.24896540929544,8.86135578334484,11.1029584143656,17.4204194826918,17.1678338779039,11.675091226861,14.3702009248641,10.7227141721969,4.15202376853769,5.08327573370455,5.22677619024884,15.1834519214739,8.43085085924227,5.49803912772208,6.07247260846807,9.5569624297229,13.6727525309848,11.4054245333805,12.1965846452996,10.7508753369711,8.74515085866421,13.496303366509,13.1380479507367,3.22570789159572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3,0,2.14280734351315,2.01770233331294,3.03482802118316,1.59363533945908,4.52382087829458,8.18161311646033,3.94422421706063,2.37894065418911,1.57854656550838,0.472775363535873,0,5.49451649953598,1.25692471932802,5.60544326627578,2.73947616152849,5.39818978046554,0.47775168788705,3.28792103212619,2.21219056425817,20.8072151408944,6.60661434749802,8.81882501203278,1.86494547746733,0.51215543128185,0.691259661814092,3.44181887056222,16.4481481015486,13.1228643329103,5.08064460229115,1.14553434272025,0,0,0.894843454382338,4.51491074630118,6.33973209907801,0,1.43727929598746,5.799072156691,4.85710993059139,4.67878926924211,2.78531085225916,1.66488127088596,0,1.8689887846723,5.28369952483357,6.01958433241968,3.27839340755936,8.46571133450741,2.45148321753905,5.65623713043902,4.3187862765288,6.83206720752298,2.5359343655004,21.7506706800406,13.3457163531392,10.3132620757723,10.6937036839674,0,0.705789743431384,0,4.3820183294791,5.04602211744995,6.30694165866386,3.62874593044325,2.58367662725476,0.872701380680755,3.1741610430924,17.8557608720041,16.6383226307311,18.6029421713229,3.40649347054713,0.655593431782173,4.68784453742317,0.713921808193872,0.801652215796681,0.18378979906969,0,5.53184496993148,1.33982065078089,6.63335551567024,4.75791780964718,4.4779136199206,4.04709533488359,10.915525762285,5.8970978581065,5.15806567870822,6.42836298609466,2.82964064541507,1.52401723527873,3.76456631193809,9.22723126299849,4.08816570738255,2.99394320891412,1.05824249194267,4.58927587274176,13.5150597600858,4.22178449900958,7.03922827210363,6.47879654169192,2.03448089157869,6.65756774185513,11.2713324410975,30.1334382765039|short_description=p1@DOK1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=1796 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2990 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000340004,ENST00000474924,ENST00000475191,ENST00000480318,ENST00000482206,ENST00000489958,ENST00000496966,uc002sms.2,uc002smt.2,uc002smu.2,uc010ffo.2,uc010yrz.1_5end | |||
|description=CAGE_peak_1_at_DOK1_5end | |||
|id=chr2:74781828..74781898,+ | |||
|ontology_enrichment_celltype=CL:0000048!7.51e-48!430;CL:0000723!2.74e-44!436;CL:0000034!5.35e-43!444;CL:0002320!1.37e-42!365;CL:0000134!5.15e-39!358;CL:0000219!2.29e-32!390;CL:0002371!2.92e-22!591;CL:0000144!1.94e-18!625;CL:0000988!4.76e-16!182;CL:0002032!2.92e-14!165;CL:0000837!2.92e-14!165;CL:0000037!3.84e-14!172;CL:0000566!3.84e-14!172;CL:0000055!1.75e-13!180;CL:0000763!3.20e-12!112;CL:0000049!3.20e-12!112;CL:0000003!1.83e-11!722;CL:0000738!6.32e-11!140;CL:0000057!1.73e-10!75;CL:0002031!1.93e-09!124;CL:0000766!5.69e-09!76;CL:0000557!3.14e-08!71;CL:0002087!3.75e-08!119;CL:0000839!2.62e-07!70;CL:0000012!5.19e-07!682;CL:0000548!6.42e-07!679;CL:0000004!6.42e-07!679;CL:0000255!6.42e-07!679;CL:0000183!6.60e-07!59 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,2.25e-50,427;CL:0000723,1.29e-46,433;CL:0000034,2.81e-45,441;CL:0002320,4.98e-45,361;CL:0000134,2.35e-41,354;CL:0000219,1.98e-34,386;CL:0000988,1.44e-17,177;CL:0002032,9.81e-16,161;CL:0000837,9.81e-16,161;CL:0000037,1.42e-15,168;CL:0000763,6.50e-14,108;CL:0000049,6.50e-14,108;CL:0000738,2.78e-12,136;CL:0002031,9.27e-11,120;CL:0000057,9.69e-11,76;CL:0000766,1.03e-10,72;CL:0000557,6.09e-10,67;CL:0002087,2.25e-09,115;CL:0000839,6.78e-09,66;CL:0002009,6.65e-08,61;CL:0002194,1.04e-07,59;CL:0000576,1.04e-07,59;CL:0000040,1.04e-07,59;CL:0000559,1.04e-07,59 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!5.33e-44!375;UBERON:0003081!7.66e-17!216;UBERON:0002204!1.52e-16!167;UBERON:0002390!8.56e-15!102;UBERON:0003061!8.56e-15!102;UBERON:0002193!8.66e-14!112;UBERON:0004765!4.96e-11!101;UBERON:0001434!4.96e-11!101;UBERON:0002371!1.28e-10!80;UBERON:0001474!1.53e-10!86;UBERON:0002405!4.98e-07!115;UBERON:0004535!5.95e-07!110 | |||
|ontology_enrichment_uberon_v019=UBERON:0002390;1.79e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.97e-46,371;UBERON:0002204,3.08e-19,167;UBERON:0003081,2.43e-17,203;UBERON:0002390,7.78e-17,98;UBERON:0003061,7.78e-17,98;UBERON:0002193,1.26e-15,108;UBERON:0000926,3.77e-14,315;UBERON:0004120,3.77e-14,315;UBERON:0006603,3.77e-14,315;UBERON:0001434,1.28e-13,100;UBERON:0004765,1.55e-12,90;UBERON:0002371,1.62e-12,76;UBERON:0001474,2.42e-12,82;UBERON:0002405,3.63e-12,93;UBERON:0000479,2.53e-08,773;UBERON:0007503,1.59e-07,78;UBERON:0004535,7.59e-07,109 | |||
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| |||
|short_description=p1@DOK1 | |||
}} |
Revision as of 19:50, 12 September 2013
Short description: | p1@DOK1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_DOK1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000340004, ENST00000474924, ENST00000475191, ENST00000480318, ENST00000482206, ENST00000489958, ENST00000496966, uc002sms.2, uc002smt.2, uc002smu.2, uc010ffo.2, uc010yrz.1_5end |
EntrezGene: | DOK1 |
HGNC: | 2990 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 2.25e-50 | 427 |
somatic stem cell | 1.29e-46 | 433 |
stem cell | 2.81e-45 | 441 |
connective tissue cell | 4.98e-45 | 361 |
mesenchymal cell | 2.35e-41 | 354 |
motile cell | 1.98e-34 | 386 |
hematopoietic cell | 1.44e-17 | 177 |
hematopoietic oligopotent progenitor cell | 9.81e-16 | 161 |
hematopoietic multipotent progenitor cell | 9.81e-16 | 161 |
hematopoietic stem cell | 1.42e-15 | 168 |
myeloid cell | 6.50e-14 | 108 |
common myeloid progenitor | 6.50e-14 | 108 |
leukocyte | 2.78e-12 | 136 |
hematopoietic lineage restricted progenitor cell | 9.27e-11 | 120 |
fibroblast | 9.69e-11 | 76 |
myeloid leukocyte | 1.03e-10 | 72 |
granulocyte monocyte progenitor cell | 6.09e-10 | 67 |
nongranular leukocyte | 2.25e-09 | 115 |
myeloid lineage restricted progenitor cell | 6.78e-09 | 66 |
macrophage dendritic cell progenitor | 6.65e-08 | 61 |
monopoietic cell | 1.04e-07 | 59 |
monocyte | 1.04e-07 | 59 |
monoblast | 1.04e-07 | 59 |
promonocyte | 1.04e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 1.97e-46 | 371 |
musculoskeletal system | 3.08e-19 | 167 |
lateral plate mesoderm | 2.43e-17 | 203 |
hematopoietic system | 7.78e-17 | 98 |
blood island | 7.78e-17 | 98 |
hemolymphoid system | 1.26e-15 | 108 |
mesoderm | 3.77e-14 | 315 |
mesoderm-derived structure | 3.77e-14 | 315 |
presumptive mesoderm | 3.77e-14 | 315 |
skeletal system | 1.28e-13 | 100 |
skeletal element | 1.55e-12 | 90 |
bone marrow | 1.62e-12 | 76 |
bone element | 2.42e-12 | 82 |
immune system | 3.63e-12 | 93 |
tissue | 2.53e-08 | 773 |
epithelial vesicle | 1.59e-07 | 78 |
cardiovascular system | 7.59e-07 | 109 |
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