FFCP PHASE1:Hg19::chr3:24161385..24161386,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7068|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=11799|TSSclassifier=N|UniProt=|association_with_transcript=-116bp_to_AK096885_5end|description=CAGE_peak_15_at_THRB_5end|id=chr3:24161385..24161386,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001869!5.31e-27!32;UBERON:0001893!4.44e-25!34;UBERON:0002791!2.23e-23!33;UBERON:0002020!1.56e-22!34;UBERON:0003528!1.56e-22!34;UBERON:0002780!4.34e-22!41;UBERON:0001890!4.34e-22!41;UBERON:0006240!4.34e-22!41;UBERON:0003080!2.04e-21!42;UBERON:0002619!2.81e-18!22;UBERON:0007023!4.79e-18!115;UBERON:0001950!9.21e-18!20;UBERON:0001049!6.09e-17!57;UBERON:0005068!6.09e-17!57;UBERON:0006241!6.09e-17!57;UBERON:0007135!6.09e-17!57;UBERON:0000955!1.42e-16!69;UBERON:0006238!1.42e-16!69;UBERON:0002616!3.86e-16!59;UBERON:0000956!1.08e-15!25;UBERON:0000203!1.08e-15!25;UBERON:0005743!3.28e-14!86;UBERON:0003056!3.74e-14!61;UBERON:0001017!4.40e-14!82;UBERON:0000073!3.89e-12!94;UBERON:0001016!3.89e-12!94;UBERON:0002420!3.46e-11!9;UBERON:0007245!3.46e-11!9;UBERON:0010009!3.46e-11!9;UBERON:0010011!3.46e-11!9;UBERON:0000454!3.46e-11!9;UBERON:0009663!4.69e-11!7;UBERON:0003075!5.61e-10!86;UBERON:0007284!5.61e-10!86;UBERON:0000200!1.84e-09!6;UBERON:0002346!3.01e-09!90;UBERON:0000033!3.07e-09!123;UBERON:0000369!6.41e-09!4;UBERON:0002435!6.41e-09!4;UBERON:0000204!6.41e-09!4;UBERON:0010082!6.41e-09!4;UBERON:0000153!1.87e-08!129;UBERON:0007811!1.87e-08!129;UBERON:0002308!2.07e-08!9;UBERON:0000125!2.07e-08!9;UBERON:0002771!1.42e-07!3;UBERON:0002021!1.49e-07!5;UBERON:0005383!1.59e-07!3;UBERON:0005382!1.59e-07!3|ontology_enrichment_uberon_v019=UBERON:0002771;3.52e-50;2!UBERON:0002021;4.66e-21;5!UBERON:0001950;4.86e-20;20!UBERON:0002619;2.02e-18;22!UBERON:0000200;8.34e-18;6!UBERON:0000956;1.86e-16;25!UBERON:0000203;1.86e-16;25!UBERON:0001871;1.78e-15;6!UBERON:0003528;1.77e-12;34!UBERON:0002791;1.77e-12;32!UBERON:0002020;1.77e-12;34!UBERON:0001869;1.77e-12;32!UBERON:0001893;1.58e-09;34|ontology_enrichment_uberon_v019_2=UBERON:0002771,2.74e-50,2;UBERON:0002021,5.15e-21,5;UBERON:0001950,4.86e-20,20;UBERON:0002619,2.02e-18,22;UBERON:0000200,7.67e-18,6;UBERON:0000956,1.86e-16,25;UBERON:0000203,1.86e-16,25;UBERON:0001871,1.65e-15,6;UBERON:0002791,2.96e-13,32;UBERON:0001869,2.96e-13,32;UBERON:0003528,1.42e-12,34;UBERON:0002020,1.42e-12,34;UBERON:0001893,1.42e-12,34;UBERON:0002780,1.07e-10,41;UBERON:0001890,1.07e-10,41;UBERON:0003080,1.07e-10,41;UBERON:0006240,1.07e-10,41;UBERON:0000073,1.34e-08,53;UBERON:0002616,1.34e-08,53;UBERON:0001049,3.28e-08,56;UBERON:0005068,3.28e-08,56;UBERON:0006241,3.28e-08,56;UBERON:0007135,3.28e-08,56;UBERON:0003056,1.20e-07,61;UBERON:0000955,6.59e-07,68;UBERON:0006238,6.59e-07,68|phase1_expression=0.181678379270557,0.428201047781966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0.718618141816238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0.464367928031979,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0.120859449591622,0,0.276242966807689,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0.15350367472613,0,0.107420244868274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.140669416410513,0.111308705022906,0,0,0.19924798825107,0,0.251932747854276,0,0,0,0,0,0,0.197286811273867,0,0,0.969332746095218,0.185536196323703,0,0,0.0874599999961957,0,0,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0,0,0,0,0,0,0,0,0.269272933229316,0,0,0,0,0,0,0,0,0,0.167821586975843,0,0,0.210998064528027,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,0.0979923974143777,0,0,0,0.0967563312890851,0,0,0,0,0.451961481561065,0,0,0.569797163602908,0,0,0,0,0,0,0.686379991447858,0,0,0,0,0,0.101998217636322,0,0.600420288709789,0.273810757783986,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0.0787831823072236,0.247247575143499,0.0674035438541849,0.0984274815147488,0,0,0.136203406111576,0,0,0,0,0,0.242998226632099,0,0.0788057072991982,0.0524545881349981,0,0,0.191915197319445,0,0.662091970365432,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306345576763462,0,0,0,1.46431517882356,0.1251909307065,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0.0642292250964595,0,0.319267718114302,0.41023272848151,1.00828678488687,0.0691572524642179,0.161475645631851,0,0,0,0,0.231051332300676,0,0,0,0,0,0,0,0,0,0.337687923091973,0,0,0.443910671357348,0.546974809018219,0,0,0,0.127762427639595,0,0,0,0.91064876540519,0,0,0,0.0679697329768317,0.197318320688547,0,0.111231401892069,0,0.157115589916002,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0.860454717640555,0,0,0.423387050190929,0,0,0,0.671132590786754,0,0,0,0,0,0,0.233939463462106,0,0,0,0,0,0,0.218559560503957,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0.109265571963696,0,0,0,0,0,0,0.267964130156178,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0.665320713092027,0,0,0,0,0,0,0,0,0.402547587182052,0|short_description=p15@THRB}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=7068 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11799 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-116bp_to_AK096885_5end | |||
|description=CAGE_peak_15_at_THRB_5end | |||
|id=chr3:24161385..24161386,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001869!5.31e-27!32;UBERON:0001893!4.44e-25!34;UBERON:0002791!2.23e-23!33;UBERON:0002020!1.56e-22!34;UBERON:0003528!1.56e-22!34;UBERON:0002780!4.34e-22!41;UBERON:0001890!4.34e-22!41;UBERON:0006240!4.34e-22!41;UBERON:0003080!2.04e-21!42;UBERON:0002619!2.81e-18!22;UBERON:0007023!4.79e-18!115;UBERON:0001950!9.21e-18!20;UBERON:0001049!6.09e-17!57;UBERON:0005068!6.09e-17!57;UBERON:0006241!6.09e-17!57;UBERON:0007135!6.09e-17!57;UBERON:0000955!1.42e-16!69;UBERON:0006238!1.42e-16!69;UBERON:0002616!3.86e-16!59;UBERON:0000956!1.08e-15!25;UBERON:0000203!1.08e-15!25;UBERON:0005743!3.28e-14!86;UBERON:0003056!3.74e-14!61;UBERON:0001017!4.40e-14!82;UBERON:0000073!3.89e-12!94;UBERON:0001016!3.89e-12!94;UBERON:0002420!3.46e-11!9;UBERON:0007245!3.46e-11!9;UBERON:0010009!3.46e-11!9;UBERON:0010011!3.46e-11!9;UBERON:0000454!3.46e-11!9;UBERON:0009663!4.69e-11!7;UBERON:0003075!5.61e-10!86;UBERON:0007284!5.61e-10!86;UBERON:0000200!1.84e-09!6;UBERON:0002346!3.01e-09!90;UBERON:0000033!3.07e-09!123;UBERON:0000369!6.41e-09!4;UBERON:0002435!6.41e-09!4;UBERON:0000204!6.41e-09!4;UBERON:0010082!6.41e-09!4;UBERON:0000153!1.87e-08!129;UBERON:0007811!1.87e-08!129;UBERON:0002308!2.07e-08!9;UBERON:0000125!2.07e-08!9;UBERON:0002771!1.42e-07!3;UBERON:0002021!1.49e-07!5;UBERON:0005383!1.59e-07!3;UBERON:0005382!1.59e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002771;3.52e-50;2!UBERON:0002021;4.66e-21;5!UBERON:0001950;4.86e-20;20!UBERON:0002619;2.02e-18;22!UBERON:0000200;8.34e-18;6!UBERON:0000956;1.86e-16;25!UBERON:0000203;1.86e-16;25!UBERON:0001871;1.78e-15;6!UBERON:0003528;1.77e-12;34!UBERON:0002791;1.77e-12;32!UBERON:0002020;1.77e-12;34!UBERON:0001869;1.77e-12;32!UBERON:0001893;1.58e-09;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002771,2.74e-50,2;UBERON:0002021,5.15e-21,5;UBERON:0001950,4.86e-20,20;UBERON:0002619,2.02e-18,22;UBERON:0000200,7.67e-18,6;UBERON:0000956,1.86e-16,25;UBERON:0000203,1.86e-16,25;UBERON:0001871,1.65e-15,6;UBERON:0002791,2.96e-13,32;UBERON:0001869,2.96e-13,32;UBERON:0003528,1.42e-12,34;UBERON:0002020,1.42e-12,34;UBERON:0001893,1.42e-12,34;UBERON:0002780,1.07e-10,41;UBERON:0001890,1.07e-10,41;UBERON:0003080,1.07e-10,41;UBERON:0006240,1.07e-10,41;UBERON:0000073,1.34e-08,53;UBERON:0002616,1.34e-08,53;UBERON:0001049,3.28e-08,56;UBERON:0005068,3.28e-08,56;UBERON:0006241,3.28e-08,56;UBERON:0007135,3.28e-08,56;UBERON:0003056,1.20e-07,61;UBERON:0000955,6.59e-07,68;UBERON:0006238,6.59e-07,68 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0.718618141816238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0.464367928031979,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0.120859449591622,0,0.276242966807689,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0.15350367472613,0,0.107420244868274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.140669416410513,0.111308705022906,0,0,0.19924798825107,0,0.251932747854276,0,0,0,0,0,0,0.197286811273867,0,0,0.969332746095218,0.185536196323703,0,0,0.0874599999961957,0,0,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0,0,0,0,0,0,0,0,0.269272933229316,0,0,0,0,0,0,0,0,0,0.167821586975843,0,0,0.210998064528027,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,0.0979923974143777,0,0,0,0.0967563312890851,0,0,0,0,0.451961481561065,0,0,0.569797163602908,0,0,0,0,0,0,0.686379991447858,0,0,0,0,0,0.101998217636322,0,0.600420288709789,0.273810757783986,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0.0787831823072236,0.247247575143499,0.0674035438541849,0.0984274815147488,0,0,0.136203406111576,0,0,0,0,0,0.242998226632099,0,0.0788057072991982,0.0524545881349981,0,0,0.191915197319445,0,0.662091970365432,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306345576763462,0,0,0,1.46431517882356,0.1251909307065,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0.0642292250964595,0,0.319267718114302,0.41023272848151,1.00828678488687,0.0691572524642179,0.161475645631851,0,0,0,0,0.231051332300676,0,0,0,0,0,0,0,0,0,0.337687923091973,0,0,0.443910671357348,0.546974809018219,0,0,0,0.127762427639595,0,0,0,0.91064876540519,0,0,0,0.0679697329768317,0.197318320688547,0,0.111231401892069,0,0.157115589916002,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0.860454717640555,0,0,0.423387050190929,0,0,0,0.671132590786754,0,0,0,0,0,0,0.233939463462106,0,0,0,0,0,0,0.218559560503957,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0.109265571963696,0,0,0,0,0,0,0.267964130156178,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0.665320713092027,0,0,0,0,0,0,0,0,0.402547587182052,0 | |||
|short_description=p15@THRB | |||
}} |
Revision as of 23:43, 12 September 2013
Short description: | p15@THRB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_15_at_THRB_5end |
Coexpression cluster: | NA |
Association with transcript: | -116bp_to_AK096885_5end |
EntrezGene: | THRB |
HGNC: | 11799 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
middle temporal gyrus | 2.74e-50 | 2 |
occipital lobe | 5.15e-21 | 5 |
neocortex | 4.86e-20 | 20 |
regional part of cerebral cortex | 2.02e-18 | 22 |
gyrus | 7.67e-18 | 6 |
cerebral cortex | 1.86e-16 | 25 |
pallium | 1.86e-16 | 25 |
temporal lobe | 1.65e-15 | 6 |
regional part of telencephalon | 2.96e-13 | 32 |
cerebral hemisphere | 2.96e-13 | 32 |
brain grey matter | 1.42e-12 | 34 |
gray matter | 1.42e-12 | 34 |
telencephalon | 1.42e-12 | 34 |
regional part of forebrain | 1.07e-10 | 41 |
forebrain | 1.07e-10 | 41 |
anterior neural tube | 1.07e-10 | 41 |
future forebrain | 1.07e-10 | 41 |
regional part of nervous system | 1.34e-08 | 53 |
regional part of brain | 1.34e-08 | 53 |
neural tube | 3.28e-08 | 56 |
neural rod | 3.28e-08 | 56 |
future spinal cord | 3.28e-08 | 56 |
neural keel | 3.28e-08 | 56 |
pre-chordal neural plate | 1.20e-07 | 61 |
brain | 6.59e-07 | 68 |
future brain | 6.59e-07 | 68 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.