FFCP PHASE1:Mm9::chr2:84371503..84371514,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=|HGNC=|MCL_coexpression_id=1257|UniProt=|association_with_transcript=-24bp_to_ENSMUST00000139492_5end|description=CAGE_peak_3_at_ENSMUST00000139492_5end|id=chr2:84371503..84371514,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002092,2.89e-18,3;CL:0002540,2.89e-18,3;CL:0002194,2.42e-13,4;CL:0000766,2.42e-13,4;CL:0000234,2.42e-13,4;CL:0000576,2.42e-13,4;CL:0000235,2.42e-13,4;CL:0000864,2.42e-13,4;CL:0002009,2.42e-13,4;CL:0000040,2.42e-13,4;CL:0000559,2.42e-13,4;CL:0002476,2.02e-12,2;CL:0000839,1.20e-10,13;CL:0000763,1.25e-08,16;CL:0002027,3.61e-08,3;CL:0002006,3.61e-08,3;CL:0002024,3.61e-08,3;CL:0000473,7.61e-08,7;CL:0000557,7.61e-08,7;CL:0000049,3.04e-07,19;CL:0002320,4.97e-07,46;CL:0000134,4.97e-07,46|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!1.46e-12!45;UBERON:0003061!1.46e-12!45;UBERON:0002193!2.89e-12!48;UBERON:0002405!3.01e-11!70;UBERON:0002371!1.90e-09!16;UBERON:0001474!4.56e-09!22;UBERON:0004765!4.56e-09!22;UBERON:0001434!4.56e-09!22|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.27e-24,48;UBERON:0002405,2.27e-24,48;UBERON:0002390,1.76e-22,45;UBERON:0003061,1.76e-22,45;UBERON:0002106,1.98e-22,6;UBERON:0004457,1.98e-22,6;UBERON:0000042,1.98e-22,6;UBERON:0004854,1.98e-22,6;UBERON:0009034,1.98e-22,6;UBERON:0002095,1.98e-22,6;UBERON:0004782,1.98e-22,6;UBERON:0003281,1.98e-22,6;UBERON:0009664,1.98e-22,6;UBERON:0002296,1.98e-22,6;UBERON:0005602,1.98e-22,6;UBERON:0001179,1.98e-22,6;UBERON:0006293,1.98e-22,6;UBERON:0002371,7.20e-22,16;UBERON:0001474,1.11e-15,22;UBERON:0004765,1.11e-15,22;UBERON:0001434,1.11e-15,22;UBERON:0003887,1.84e-13,10;UBERON:0003081,9.04e-11,87;UBERON:0002204,1.65e-10,32;UBERON:0000945,2.20e-08,16;UBERON:0010039,2.20e-08,16;UBERON:0000926,2.81e-07,120;UBERON:0004120,2.81e-07,120;UBERON:0006603,2.81e-07,120;UBERON:0000029,3.59e-07,1;UBERON:0001097,3.59e-07,1;UBERON:0003968,3.59e-07,1;UBERON:0001467,3.59e-07,1;UBERON:0002075,4.85e-07,19;UBERON:0002384,4.97e-07,46|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.666219523631325,1.21485160433896,2.79824751251259,0.157731082679119,0.137114433605739,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.837063261473815,0,0.523523743973798,0,0,0.485510353031154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.74924787961049,8.89979726310277,6.3943210345149,2.09720077362883,0.384218305321555,0,0,0,0.285650984403804,0,0,0.0958454710182364,0,0,0,0.153606533256243,0,0,0,0,0,0,0.294628585473668,0.284743361598206,0,0,0,0,0,0,0,0,0,0.702222100658759,0,0,0,0,0,0,0,0,0,0,0.22836775943812,6.73238497482646,0.593768556259299,0,0,0,0,0.117588707135705,0.125666591329675,0,0,0.884610551949874,0,0.441683036920787,0.484875253135222,0,0,0,0,0.479260498023681,0,0.381210681219194,0,0,0,0.173824320192276,0.255715457330331,0,0.324482526135515,0.101839363850316,0.124406970610093,0.252722758433675,0,0,0,0,0,0.0680364991513279,0.12811372028485,0,0,0,0,0,0,0,0.348252166522167,0,0,0,0.51469581422943,0.852490498186778,0,0,0,0,0,0,0,0,0,0,0.164167464079095,0.162137619091711,0,0,0.536825675041487,0.210289948564127,0.102904612379284,0,0,0,0,0,0.201683524623343,0,0,0,0,0,0.397912944082302,0,0,0,0,0,0,0,0,0,0,0.189709611372772,0,0,0,0,0,0.393117990226406,0.449724224769707,0.202860121388503,0.241177159752417,0,0.863088412352432,0.648540907100142,0.274561413188081,0,1.11642284300551,0.312037673114561,0,0,0,0,0,0,0,0,0.167506257441816,0.238043640886014,0,0.157635144106191,0.221464689648775,0,0,0.172684981865896,0.144649058581512,4.52373851817817,6.52686820582452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0.35613120733451,0.162886959353576,0.164970122972535,0,0,0.302323556964751,0,0,0.307435147943927,0,0,0,0.316036757935816,0,0,0,0,0,0,0,0.178368817602071,0.164549020602121,0,0,0,0,0.16488625294148,0.322928853391811,0.180938774784468,0,0,0.291480836629851,0,4.61351378154202,0.412773735926445,1.11116716421827,2.0720530270516,1.50363650493128,1.37266903923914,0.169978429993855,0.139951452323658,0.276399947608848,0,0,0,0,0.418176592028937,0.436725127492355,0.269728692769641,0.165306911450672,0.26175594198403,0.259229946583586,0.621339313086926,0,0,0,0,0,0.168956125490778,0,0.2604087696879,0,0,0,1.58005560314089,0,0,0.25984164595559,0.179026695667481,0.79472541912506,0.240390899039938,0.147689527174577,0.302899349844443,0.457240839929999,0.100826185136841,0.682205165178267,0.673482891482306,0.584384510907845,0.226730383615211,0,0,0,0,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0.209613162627982,0,0.222246727801615,0,0,0,0.25347929989024,0.188626341386076,0.280924522409647,0.0640251524048693,0.114870937911227,0,0.115884325944855,0.192909220463705,0,0,0,0.354951612318675,0.715308569841963,0,0.0941093804153306,0.0846146078916765,0.182927972872773,0.263069711437843,0.135804113845862,0,0.237270036248348,0,0,0.154936841185966,0,0,0,0.429742108096597,0,0.220591419119515,0.231867835620421|short_description=p3@ENSMUST00000139492}} | ||
|EntrezGene= | |||
|HGNC= | |||
|MCL_coexpression_id=1257 | |||
|UniProt= | |||
|association_with_transcript=-24bp_to_ENSMUST00000139492_5end | |||
|description=CAGE_peak_3_at_ENSMUST00000139492_5end | |||
|id=chr2:84371503..84371514,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002092,2.89e-18,3;CL:0002540,2.89e-18,3;CL:0002194,2.42e-13,4;CL:0000766,2.42e-13,4;CL:0000234,2.42e-13,4;CL:0000576,2.42e-13,4;CL:0000235,2.42e-13,4;CL:0000864,2.42e-13,4;CL:0002009,2.42e-13,4;CL:0000040,2.42e-13,4;CL:0000559,2.42e-13,4;CL:0002476,2.02e-12,2;CL:0000839,1.20e-10,13;CL:0000763,1.25e-08,16;CL:0002027,3.61e-08,3;CL:0002006,3.61e-08,3;CL:0002024,3.61e-08,3;CL:0000473,7.61e-08,7;CL:0000557,7.61e-08,7;CL:0000049,3.04e-07,19;CL:0002320,4.97e-07,46;CL:0000134,4.97e-07,46 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.46e-12!45;UBERON:0003061!1.46e-12!45;UBERON:0002193!2.89e-12!48;UBERON:0002405!3.01e-11!70;UBERON:0002371!1.90e-09!16;UBERON:0001474!4.56e-09!22;UBERON:0004765!4.56e-09!22;UBERON:0001434!4.56e-09!22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.27e-24,48;UBERON:0002405,2.27e-24,48;UBERON:0002390,1.76e-22,45;UBERON:0003061,1.76e-22,45;UBERON:0002106,1.98e-22,6;UBERON:0004457,1.98e-22,6;UBERON:0000042,1.98e-22,6;UBERON:0004854,1.98e-22,6;UBERON:0009034,1.98e-22,6;UBERON:0002095,1.98e-22,6;UBERON:0004782,1.98e-22,6;UBERON:0003281,1.98e-22,6;UBERON:0009664,1.98e-22,6;UBERON:0002296,1.98e-22,6;UBERON:0005602,1.98e-22,6;UBERON:0001179,1.98e-22,6;UBERON:0006293,1.98e-22,6;UBERON:0002371,7.20e-22,16;UBERON:0001474,1.11e-15,22;UBERON:0004765,1.11e-15,22;UBERON:0001434,1.11e-15,22;UBERON:0003887,1.84e-13,10;UBERON:0003081,9.04e-11,87;UBERON:0002204,1.65e-10,32;UBERON:0000945,2.20e-08,16;UBERON:0010039,2.20e-08,16;UBERON:0000926,2.81e-07,120;UBERON:0004120,2.81e-07,120;UBERON:0006603,2.81e-07,120;UBERON:0000029,3.59e-07,1;UBERON:0001097,3.59e-07,1;UBERON:0003968,3.59e-07,1;UBERON:0001467,3.59e-07,1;UBERON:0002075,4.85e-07,19;UBERON:0002384,4.97e-07,46 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.666219523631325,1.21485160433896,2.79824751251259,0.157731082679119,0.137114433605739,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.837063261473815,0,0.523523743973798,0,0,0.485510353031154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.74924787961049,8.89979726310277,6.3943210345149,2.09720077362883,0.384218305321555,0,0,0,0.285650984403804,0,0,0.0958454710182364,0,0,0,0.153606533256243,0,0,0,0,0,0,0.294628585473668,0.284743361598206,0,0,0,0,0,0,0,0,0,0.702222100658759,0,0,0,0,0,0,0,0,0,0,0.22836775943812,6.73238497482646,0.593768556259299,0,0,0,0,0.117588707135705,0.125666591329675,0,0,0.884610551949874,0,0.441683036920787,0.484875253135222,0,0,0,0,0.479260498023681,0,0.381210681219194,0,0,0,0.173824320192276,0.255715457330331,0,0.324482526135515,0.101839363850316,0.124406970610093,0.252722758433675,0,0,0,0,0,0.0680364991513279,0.12811372028485,0,0,0,0,0,0,0,0.348252166522167,0,0,0,0.51469581422943,0.852490498186778,0,0,0,0,0,0,0,0,0,0,0.164167464079095,0.162137619091711,0,0,0.536825675041487,0.210289948564127,0.102904612379284,0,0,0,0,0,0.201683524623343,0,0,0,0,0,0.397912944082302,0,0,0,0,0,0,0,0,0,0,0.189709611372772,0,0,0,0,0,0.393117990226406,0.449724224769707,0.202860121388503,0.241177159752417,0,0.863088412352432,0.648540907100142,0.274561413188081,0,1.11642284300551,0.312037673114561,0,0,0,0,0,0,0,0,0.167506257441816,0.238043640886014,0,0.157635144106191,0.221464689648775,0,0,0.172684981865896,0.144649058581512,4.52373851817817,6.52686820582452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0.35613120733451,0.162886959353576,0.164970122972535,0,0,0.302323556964751,0,0,0.307435147943927,0,0,0,0.316036757935816,0,0,0,0,0,0,0,0.178368817602071,0.164549020602121,0,0,0,0,0.16488625294148,0.322928853391811,0.180938774784468,0,0,0.291480836629851,0,4.61351378154202,0.412773735926445,1.11116716421827,2.0720530270516,1.50363650493128,1.37266903923914,0.169978429993855,0.139951452323658,0.276399947608848,0,0,0,0,0.418176592028937,0.436725127492355,0.269728692769641,0.165306911450672,0.26175594198403,0.259229946583586,0.621339313086926,0,0,0,0,0,0.168956125490778,0,0.2604087696879,0,0,0,1.58005560314089,0,0,0.25984164595559,0.179026695667481,0.79472541912506,0.240390899039938,0.147689527174577,0.302899349844443,0.457240839929999,0.100826185136841,0.682205165178267,0.673482891482306,0.584384510907845,0.226730383615211,0,0,0,0,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0.209613162627982,0,0.222246727801615,0,0,0,0.25347929989024,0.188626341386076,0.280924522409647,0.0640251524048693,0.114870937911227,0,0.115884325944855,0.192909220463705,0,0,0,0.354951612318675,0.715308569841963,0,0.0941093804153306,0.0846146078916765,0.182927972872773,0.263069711437843,0.135804113845862,0,0.237270036248348,0,0,0.154936841185966,0,0,0,0.429742108096597,0,0.220591419119515,0.231867835620421 | |||
|short_description=p3@ENSMUST00000139492 | |||
}} |
Revision as of 00:46, 14 September 2013
Short description: | p3@ENSMUST00000139492 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_ENSMUST00000139492_5end |
Coexpression cluster: | MCL_coexpression_mm9:1257 |
Association with transcript: | -24bp_to_ENSMUST00000139492_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow cell | 2.89e-18 | 3 |
mesenchymal stem cell of the bone marrow | 2.89e-18 | 3 |
monopoietic cell | 2.42e-13 | 4 |
myeloid leukocyte | 2.42e-13 | 4 |
phagocyte | 2.42e-13 | 4 |
monocyte | 2.42e-13 | 4 |
macrophage | 2.42e-13 | 4 |
tissue-resident macrophage | 2.42e-13 | 4 |
macrophage dendritic cell progenitor | 2.42e-13 | 4 |
monoblast | 2.42e-13 | 4 |
promonocyte | 2.42e-13 | 4 |
bone marrow macrophage | 2.02e-12 | 2 |
myeloid lineage restricted progenitor cell | 1.20e-10 | 13 |
myeloid cell | 1.25e-08 | 16 |
CD9-positive, CD41-positive megakaryocyte cell | 3.61e-08 | 3 |
Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell | 3.61e-08 | 3 |
Kit-positive megakaryocyte progenitor cell | 3.61e-08 | 3 |
defensive cell | 7.61e-08 | 7 |
granulocyte monocyte progenitor cell | 7.61e-08 | 7 |
common myeloid progenitor | 3.04e-07 | 19 |
connective tissue cell | 4.97e-07 | 46 |
mesenchymal cell | 4.97e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 2.27e-24 | 48 |
immune system | 2.27e-24 | 48 |
hematopoietic system | 1.76e-22 | 45 |
blood island | 1.76e-22 | 45 |
spleen | 1.98e-22 | 6 |
cavity lining | 1.98e-22 | 6 |
serous membrane | 1.98e-22 | 6 |
gastrointestinal system mesentery | 1.98e-22 | 6 |
stomach region | 1.98e-22 | 6 |
mesentery | 1.98e-22 | 6 |
gastrointestinal system serosa | 1.98e-22 | 6 |
mesentery of stomach | 1.98e-22 | 6 |
gut mesentery | 1.98e-22 | 6 |
dorsal mesentery | 1.98e-22 | 6 |
dorsal mesogastrium | 1.98e-22 | 6 |
peritoneal cavity | 1.98e-22 | 6 |
spleen primordium | 1.98e-22 | 6 |
bone marrow | 7.20e-22 | 16 |
bone element | 1.11e-15 | 22 |
skeletal element | 1.11e-15 | 22 |
skeletal system | 1.11e-15 | 22 |
intraembryonic coelom | 1.84e-13 | 10 |
lateral plate mesoderm | 9.04e-11 | 87 |
musculoskeletal system | 1.65e-10 | 32 |
stomach | 2.20e-08 | 16 |
food storage organ | 2.20e-08 | 16 |
mesoderm | 2.81e-07 | 120 |
mesoderm-derived structure | 2.81e-07 | 120 |
presumptive mesoderm | 2.81e-07 | 120 |
lymph node | 3.59e-07 | 1 |
axillary lymph node | 3.59e-07 | 1 |
peripheral lymph node | 3.59e-07 | 1 |
shoulder | 3.59e-07 | 1 |
viscus | 4.85e-07 | 19 |
connective tissue | 4.97e-07 | 46 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.