FFCP PHASE1:Mm9::chr6:136890408..136890432,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=11857|HGNC=|MCL_coexpression_id=3|UniProt=Q61599|association_with_transcript=0bp_to_ENSMUST00000111891_5end|description=CAGE_peak_3_at_Arhgdib_5end|id=chr6:136890408..136890432,-|ontology_enrichment_celltype=CL:0000988!3.28e-11!32;CL:0002032!3.28e-11!32;CL:0000037!3.28e-11!32;CL:0000566!3.28e-11!32;CL:0000837!3.28e-11!32;CL:0000738!1.18e-08!17;CL:0002087!1.18e-08!17;CL:0002031!6.02e-08!25;CL:0002320!1.02e-07!46;CL:0000134!1.02e-07!46;CL:0000838!1.32e-07!12;CL:0000542!4.28e-07!13;CL:0000051!4.28e-07!13;CL:0000084!4.57e-07!11;CL:0000827!4.57e-07!11|ontology_enrichment_celltype_v019_2=CL:0000988,2.13e-12,32;CL:0002032,2.13e-12,32;CL:0000037,2.13e-12,32;CL:0000837,2.13e-12,32;CL:0000738,5.51e-09,17;CL:0002087,5.51e-09,17;CL:0002031,6.31e-09,25;CL:0002320,1.62e-08,46;CL:0000134,1.62e-08,46;CL:0000838,6.88e-08,12;CL:0000542,2.36e-07,13;CL:0000051,2.36e-07,13;CL:0000084,2.52e-07,11;CL:0000827,2.52e-07,11;CL:0000219,5.72e-07,54|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!1.20e-17!48;UBERON:0002390!8.04e-17!45;UBERON:0003061!8.04e-17!45;UBERON:0003081!1.45e-14!88;UBERON:0002405!3.35e-14!70;UBERON:0004177!3.27e-09!29;UBERON:0002371!1.02e-08!16;UBERON:0001474!4.13e-08!22;UBERON:0004765!4.13e-08!22;UBERON:0001434!4.13e-08!22;UBERON:0002204!4.61e-08!32;UBERON:0002384!1.02e-07!46;UBERON:0002370!6.64e-07!23;UBERON:0000974!6.64e-07!23;UBERON:0004807!6.64e-07!23;UBERON:0005058!6.64e-07!23;UBERON:0003351!6.64e-07!23;UBERON:0009113!6.64e-07!23;UBERON:0003295!6.64e-07!23;UBERON:0009722!6.64e-07!23;UBERON:0005562!6.64e-07!23;UBERON:0007690!6.64e-07!23;UBERON:0006562!7.78e-07!24;UBERON:0001557!7.78e-07!24;UBERON:0001042!7.78e-07!24;UBERON:0008814!7.78e-07!24;UBERON:0009145!7.78e-07!24;UBERON:0005057!8.41e-07!51|ontology_enrichment_uberon_v019_2=UBERON:0002193,6.38e-19,48;UBERON:0002405,6.38e-19,48;UBERON:0002390,4.67e-18,45;UBERON:0003061,4.67e-18,45;UBERON:0003081,1.02e-14,87;UBERON:0004177,5.01e-10,29;UBERON:0005057,5.01e-10,29;UBERON:0000077,1.88e-09,35;UBERON:0002371,4.72e-09,16;UBERON:0002204,7.45e-09,32;UBERON:0002384,1.62e-08,46;UBERON:0001474,1.67e-08,22;UBERON:0004765,1.67e-08,22;UBERON:0001434,1.67e-08,22;UBERON:0000926,3.72e-08,120;UBERON:0004120,3.72e-08,120;UBERON:0006603,3.72e-08,120;UBERON:0002370,1.38e-07,23;UBERON:0000974,1.38e-07,23;UBERON:0004807,1.38e-07,23;UBERON:0005058,1.38e-07,23;UBERON:0003351,1.38e-07,23;UBERON:0009113,1.38e-07,23;UBERON:0003295,1.38e-07,23;UBERON:0009722,1.38e-07,23;UBERON:0005562,1.38e-07,23;UBERON:0007690,1.38e-07,23;UBERON:0006562,1.67e-07,24;UBERON:0001557,1.67e-07,24;UBERON:0001042,1.67e-07,24;UBERON:0008814,1.67e-07,24;UBERON:0009145,1.67e-07,24;UBERON:0003408,3.31e-07,24|phase1_expression=0.640595388419176,0,0,0,0,0,0,19.1102518693533,21.540674489205,12.1713553687437,11.1291679346578,12.7635454392538,40.9169744535582,37.5033526377499,5.3297561890506,8.30148596298286,4.89693314689703,40.8523504138918,38.9404991440298,30.9804445812562,1.19060606211498,27.0071387266408,27.1647780704493,3.67982572424835,3.21172993494038,0,0,0,0,0.756090389279792,0.221730510655305,0,0,0,0,0,0,443.643528581122,380.510312783091,452.324514793362,418.820819478082,418.706882279527,397.632979132515,0.125896817975577,0.101376931219515,0,4.69434806608824,0.218025156380447,1.09843091367236,0.972149495371417,5.03951117851305,0,28.8586082419307,33.3666585325218,48.0614132773724,8.48956138918625,4.29800159908135,5.15672092277442,0.202316460859598,0,0.633831403506179,10.165335962074,6.22506357277798,18.4479442042687,23.7327927016074,24.8668040231135,9.88680364710736,4.61061966385865,0.207379224616955,0,0.630974884054146,0,0.883474163806454,0,0.191690942036473,0,2.20231761998777,0.383062014255563,0.307213066512487,0,0.0914876436024097,0.52091337055676,0.558365998002762,0.56276261003168,0.30559649555362,0.294628585473668,0.427115042397309,0,1.06016670666458,2.64500460373749,1.73918693221007,0.860423876981386,0.679971333707751,0,0,0,4.77511028447956,0.340860645156116,0.519572009205738,0.70667914902068,0,1.28326477414318,0,0,2.38140145112336,1.01343946190039,0.505524445014783,1.37020655662872,32.8851112231908,2.22663208597237,1.38788261412909,1.82679286987285,1.15307748628029,0.753613202763113,0.940709657085638,0.502666365318702,4.6967043869531,3.32578520915797,38.9228642857945,4.85300549842228,10.3795513676385,9.69750506270444,1.86391761218122,0,0.209446706813455,1.27728527604296,53.0781001561227,59.9902730993408,73.4465912482314,0.748953197024114,1.37250180845588,1.38219787324151,0.521472960576829,0.767146371990992,0.62336413367868,0.486723789203273,2.03678727700633,17.2925689148029,0.505445516867349,0.841767423545896,1.56144531555244,2.75882525320168,1.98068342785884,2.41127708537144,1.56483948048054,1.66547836370305,1.59292931751539,1.55222022443409,1.72454394346274,2.45837904218165,2.46331573829528,2.84954452155847,5.00485048606076,9.05455632957633,6.37924622864625,0.796137067273973,90.5855011634073,78.4911116699881,91.5006468053808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| ||
|EntrezGene=11857 | |||
|HGNC= | |||
|MCL_coexpression_id=3 | |||
|UniProt=Q61599 | |||
|association_with_transcript=0bp_to_ENSMUST00000111891_5end | |||
|description=CAGE_peak_3_at_Arhgdib_5end | |||
|id=chr6:136890408..136890432,- | |||
|ontology_enrichment_celltype=CL:0000988!3.28e-11!32;CL:0002032!3.28e-11!32;CL:0000037!3.28e-11!32;CL:0000566!3.28e-11!32;CL:0000837!3.28e-11!32;CL:0000738!1.18e-08!17;CL:0002087!1.18e-08!17;CL:0002031!6.02e-08!25;CL:0002320!1.02e-07!46;CL:0000134!1.02e-07!46;CL:0000838!1.32e-07!12;CL:0000542!4.28e-07!13;CL:0000051!4.28e-07!13;CL:0000084!4.57e-07!11;CL:0000827!4.57e-07!11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.13e-12,32;CL:0002032,2.13e-12,32;CL:0000037,2.13e-12,32;CL:0000837,2.13e-12,32;CL:0000738,5.51e-09,17;CL:0002087,5.51e-09,17;CL:0002031,6.31e-09,25;CL:0002320,1.62e-08,46;CL:0000134,1.62e-08,46;CL:0000838,6.88e-08,12;CL:0000542,2.36e-07,13;CL:0000051,2.36e-07,13;CL:0000084,2.52e-07,11;CL:0000827,2.52e-07,11;CL:0000219,5.72e-07,54 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.20e-17!48;UBERON:0002390!8.04e-17!45;UBERON:0003061!8.04e-17!45;UBERON:0003081!1.45e-14!88;UBERON:0002405!3.35e-14!70;UBERON:0004177!3.27e-09!29;UBERON:0002371!1.02e-08!16;UBERON:0001474!4.13e-08!22;UBERON:0004765!4.13e-08!22;UBERON:0001434!4.13e-08!22;UBERON:0002204!4.61e-08!32;UBERON:0002384!1.02e-07!46;UBERON:0002370!6.64e-07!23;UBERON:0000974!6.64e-07!23;UBERON:0004807!6.64e-07!23;UBERON:0005058!6.64e-07!23;UBERON:0003351!6.64e-07!23;UBERON:0009113!6.64e-07!23;UBERON:0003295!6.64e-07!23;UBERON:0009722!6.64e-07!23;UBERON:0005562!6.64e-07!23;UBERON:0007690!6.64e-07!23;UBERON:0006562!7.78e-07!24;UBERON:0001557!7.78e-07!24;UBERON:0001042!7.78e-07!24;UBERON:0008814!7.78e-07!24;UBERON:0009145!7.78e-07!24;UBERON:0005057!8.41e-07!51 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,6.38e-19,48;UBERON:0002405,6.38e-19,48;UBERON:0002390,4.67e-18,45;UBERON:0003061,4.67e-18,45;UBERON:0003081,1.02e-14,87;UBERON:0004177,5.01e-10,29;UBERON:0005057,5.01e-10,29;UBERON:0000077,1.88e-09,35;UBERON:0002371,4.72e-09,16;UBERON:0002204,7.45e-09,32;UBERON:0002384,1.62e-08,46;UBERON:0001474,1.67e-08,22;UBERON:0004765,1.67e-08,22;UBERON:0001434,1.67e-08,22;UBERON:0000926,3.72e-08,120;UBERON:0004120,3.72e-08,120;UBERON:0006603,3.72e-08,120;UBERON:0002370,1.38e-07,23;UBERON:0000974,1.38e-07,23;UBERON:0004807,1.38e-07,23;UBERON:0005058,1.38e-07,23;UBERON:0003351,1.38e-07,23;UBERON:0009113,1.38e-07,23;UBERON:0003295,1.38e-07,23;UBERON:0009722,1.38e-07,23;UBERON:0005562,1.38e-07,23;UBERON:0007690,1.38e-07,23;UBERON:0006562,1.67e-07,24;UBERON:0001557,1.67e-07,24;UBERON:0001042,1.67e-07,24;UBERON:0008814,1.67e-07,24;UBERON:0009145,1.67e-07,24;UBERON:0003408,3.31e-07,24 | |||
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| |||
|short_description=p3@Arhgdib | |||
}} |
Revision as of 09:13, 14 September 2013
Short description: | p3@Arhgdib |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Arhgdib_5end |
Coexpression cluster: | MCL_coexpression_mm9:3 |
Association with transcript: | 0bp_to_ENSMUST00000111891_5end |
EntrezGene: | Arhgdib |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 2.13e-12 | 32 |
hematopoietic oligopotent progenitor cell | 2.13e-12 | 32 |
hematopoietic stem cell | 2.13e-12 | 32 |
hematopoietic multipotent progenitor cell | 2.13e-12 | 32 |
leukocyte | 5.51e-09 | 17 |
nongranular leukocyte | 5.51e-09 | 17 |
hematopoietic lineage restricted progenitor cell | 6.31e-09 | 25 |
connective tissue cell | 1.62e-08 | 46 |
mesenchymal cell | 1.62e-08 | 46 |
lymphoid lineage restricted progenitor cell | 6.88e-08 | 12 |
lymphocyte | 2.36e-07 | 13 |
common lymphoid progenitor | 2.36e-07 | 13 |
T cell | 2.52e-07 | 11 |
pro-T cell | 2.52e-07 | 11 |
motile cell | 5.72e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 6.38e-19 | 48 |
immune system | 6.38e-19 | 48 |
hematopoietic system | 4.67e-18 | 45 |
blood island | 4.67e-18 | 45 |
lateral plate mesoderm | 1.02e-14 | 87 |
hemopoietic organ | 5.01e-10 | 29 |
immune organ | 5.01e-10 | 29 |
mixed endoderm/mesoderm-derived structure | 1.88e-09 | 35 |
bone marrow | 4.72e-09 | 16 |
musculoskeletal system | 7.45e-09 | 32 |
connective tissue | 1.62e-08 | 46 |
bone element | 1.67e-08 | 22 |
skeletal element | 1.67e-08 | 22 |
skeletal system | 1.67e-08 | 22 |
mesoderm | 3.72e-08 | 120 |
mesoderm-derived structure | 3.72e-08 | 120 |
presumptive mesoderm | 3.72e-08 | 120 |
thymus | 1.38e-07 | 23 |
neck | 1.38e-07 | 23 |
respiratory system epithelium | 1.38e-07 | 23 |
hemolymphoid system gland | 1.38e-07 | 23 |
pharyngeal epithelium | 1.38e-07 | 23 |
thymic region | 1.38e-07 | 23 |
pharyngeal gland | 1.38e-07 | 23 |
entire pharyngeal arch endoderm | 1.38e-07 | 23 |
thymus primordium | 1.38e-07 | 23 |
early pharyngeal endoderm | 1.38e-07 | 23 |
pharynx | 1.67e-07 | 24 |
upper respiratory tract | 1.67e-07 | 24 |
chordate pharynx | 1.67e-07 | 24 |
pharyngeal arch system | 1.67e-07 | 24 |
pharyngeal region of foregut | 1.67e-07 | 24 |
gland of gut | 3.31e-07 | 24 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.