FFCP PHASE1:Mm9::chr6:138375256..138375268,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=109593|HGNC=|MCL_coexpression_id=224|UniProt=E0CY33|association_with_transcript=68bp_to_ENSMUST00000162932_5end|description=CAGE_peak_8_at_Lmo3_5end|id=chr6:138375256..138375268,-|ontology_enrichment_celltype=CL:0000117!1.88e-20!23;CL:0000337!1.88e-20!23;CL:0000540!2.24e-13!33;CL:0000047!2.24e-13!33;CL:0000031!2.24e-13!33;CL:0000404!2.24e-13!33;CL:0000393!2.92e-10!39;CL:0000211!2.92e-10!39;CL:0002319!1.07e-08!43;CL:0000221!2.35e-08!44;CL:0000133!2.35e-08!44|ontology_enrichment_celltype_v019_2=CL:0000117,5.89e-20,23;CL:0000337,5.89e-20,23;CL:0000120,1.49e-13,3;CL:0000540,2.54e-13,33;CL:0000047,2.54e-13,33;CL:0000031,2.54e-13,33;CL:0000404,2.54e-13,33;CL:0002612,7.18e-13,3;CL:0002613,1.03e-12,3;CL:0000393,5.68e-11,39;CL:0000211,5.68e-11,39;CL:0002319,9.04e-10,43;CL:0000221,1.67e-09,44;CL:0000133,1.67e-09,44;CL:0002611,2.64e-09,2|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.86e-10!73;UBERON:0005743!5.86e-10!73;UBERON:0001049!1.13e-09!52;UBERON:0005068!1.13e-09!52;UBERON:0006241!1.13e-09!52;UBERON:0007135!1.13e-09!52;UBERON:0002020!1.38e-09!34;UBERON:0000073!1.94e-09!75;UBERON:0001016!1.94e-09!75;UBERON:0002240!5.07e-09!6;UBERON:0005174!5.07e-09!6;UBERON:0001137!5.07e-09!6;UBERON:0001948!7.39e-08!5;UBERON:0002315!7.39e-08!5|ontology_enrichment_uberon_v019_2=UBERON:0002240,5.13e-24,6;UBERON:0005174,5.13e-24,6;UBERON:0001137,5.13e-24,6;UBERON:0001948,1.62e-20,5;UBERON:0002315,1.62e-20,5;UBERON:0000369,6.69e-13,5;UBERON:0002435,6.69e-13,5;UBERON:0000204,6.69e-13,5;UBERON:0010082,6.69e-13,5;UBERON:0002257,7.18e-13,3;UBERON:0003076,9.42e-12,12;UBERON:0003057,9.42e-12,12;UBERON:0002256,2.64e-09,2;UBERON:0001017,2.33e-08,73;UBERON:0002020,2.89e-08,34;UBERON:0002420,4.18e-08,8;UBERON:0007245,4.18e-08,8;UBERON:0010009,4.18e-08,8;UBERON:0010011,4.18e-08,8;UBERON:0000454,4.18e-08,8;UBERON:0001016,4.55e-08,75;UBERON:0001049,2.06e-07,52;UBERON:0005068,2.06e-07,52;UBERON:0006241,2.06e-07,52;UBERON:0007135,2.06e-07,52|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.5382032855013,35.9713865904982,22.1840991227163,0,0,0,0,0,0,0,0.829516898467821,0.540023753326763,0.841299845405528,3.42781181284564,7.50953039235486,0.122490799214954,0.0958454710182364,0.919218786610021,0,0.255374676170375,0.46081959976873,1.71452174049252,4.11694396210843,2.08365348222704,0,0.56276261003168,0.30559649555362,2.06240009831567,2.56269025438385,4.47358669980721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19832511523858,0,1.25654352112864,0.173824320192276,0.511430914660661,0.20778804455956,0.811206315338788,0,0,0,0,0,0,0,0,0,0,0.0937017245597288,0,0,0.189106080167819,0,0,0,0,0,0,0,0,0,0,0,0,0.23674473558521,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0.514523061896422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0.234423373184406,0,0,0.315508219416257,0,0,0,0,0,0,0,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0,1.48340241608408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41907650703115,0.616265742988964,0.25984164595559,0.179026695667481,0.198681354781265,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93408612825759,1.19707462020309,1.87806966329548,0.486213434136588,1.67690530102386,0.367687016900028,1.11123363900808,0.412070114477788,0.320919209591815,0.505394423527595,0.760437899670719,0.565879024158229,1.03005658216871,0.832326981263301,0.976402972245426,0.476293691283074,0.463537303779422,0.578727661391115,0.412085900803307,0.441596760403192,1.37147700954166,0.532427418478012,0.953744759789284,0.726732083161643,1.12931256498397,0.423073039458382,0.365855945745545,0.526139422875686,1.22223702461276,0,0.237270036248348,0.492522411877817,0.409231043169689,0.464810523557898,0.385813221962283,0.249810577937946,0.467863216890817,0,0,0,0.231867835620421|short_description=p8@Lmo3}} | ||
|EntrezGene=109593 | |||
|HGNC= | |||
|MCL_coexpression_id=224 | |||
|UniProt=E0CY33 | |||
|association_with_transcript=68bp_to_ENSMUST00000162932_5end | |||
|description=CAGE_peak_8_at_Lmo3_5end | |||
|id=chr6:138375256..138375268,- | |||
|ontology_enrichment_celltype=CL:0000117!1.88e-20!23;CL:0000337!1.88e-20!23;CL:0000540!2.24e-13!33;CL:0000047!2.24e-13!33;CL:0000031!2.24e-13!33;CL:0000404!2.24e-13!33;CL:0000393!2.92e-10!39;CL:0000211!2.92e-10!39;CL:0002319!1.07e-08!43;CL:0000221!2.35e-08!44;CL:0000133!2.35e-08!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.89e-20,23;CL:0000337,5.89e-20,23;CL:0000120,1.49e-13,3;CL:0000540,2.54e-13,33;CL:0000047,2.54e-13,33;CL:0000031,2.54e-13,33;CL:0000404,2.54e-13,33;CL:0002612,7.18e-13,3;CL:0002613,1.03e-12,3;CL:0000393,5.68e-11,39;CL:0000211,5.68e-11,39;CL:0002319,9.04e-10,43;CL:0000221,1.67e-09,44;CL:0000133,1.67e-09,44;CL:0002611,2.64e-09,2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.86e-10!73;UBERON:0005743!5.86e-10!73;UBERON:0001049!1.13e-09!52;UBERON:0005068!1.13e-09!52;UBERON:0006241!1.13e-09!52;UBERON:0007135!1.13e-09!52;UBERON:0002020!1.38e-09!34;UBERON:0000073!1.94e-09!75;UBERON:0001016!1.94e-09!75;UBERON:0002240!5.07e-09!6;UBERON:0005174!5.07e-09!6;UBERON:0001137!5.07e-09!6;UBERON:0001948!7.39e-08!5;UBERON:0002315!7.39e-08!5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002240,5.13e-24,6;UBERON:0005174,5.13e-24,6;UBERON:0001137,5.13e-24,6;UBERON:0001948,1.62e-20,5;UBERON:0002315,1.62e-20,5;UBERON:0000369,6.69e-13,5;UBERON:0002435,6.69e-13,5;UBERON:0000204,6.69e-13,5;UBERON:0010082,6.69e-13,5;UBERON:0002257,7.18e-13,3;UBERON:0003076,9.42e-12,12;UBERON:0003057,9.42e-12,12;UBERON:0002256,2.64e-09,2;UBERON:0001017,2.33e-08,73;UBERON:0002020,2.89e-08,34;UBERON:0002420,4.18e-08,8;UBERON:0007245,4.18e-08,8;UBERON:0010009,4.18e-08,8;UBERON:0010011,4.18e-08,8;UBERON:0000454,4.18e-08,8;UBERON:0001016,4.55e-08,75;UBERON:0001049,2.06e-07,52;UBERON:0005068,2.06e-07,52;UBERON:0006241,2.06e-07,52;UBERON:0007135,2.06e-07,52 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.5382032855013,35.9713865904982,22.1840991227163,0,0,0,0,0,0,0,0.829516898467821,0.540023753326763,0.841299845405528,3.42781181284564,7.50953039235486,0.122490799214954,0.0958454710182364,0.919218786610021,0,0.255374676170375,0.46081959976873,1.71452174049252,4.11694396210843,2.08365348222704,0,0.56276261003168,0.30559649555362,2.06240009831567,2.56269025438385,4.47358669980721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19832511523858,0,1.25654352112864,0.173824320192276,0.511430914660661,0.20778804455956,0.811206315338788,0,0,0,0,0,0,0,0,0,0,0.0937017245597288,0,0,0.189106080167819,0,0,0,0,0,0,0,0,0,0,0,0,0.23674473558521,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0.514523061896422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0.234423373184406,0,0,0.315508219416257,0,0,0,0,0,0,0,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0,1.48340241608408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41907650703115,0.616265742988964,0.25984164595559,0.179026695667481,0.198681354781265,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93408612825759,1.19707462020309,1.87806966329548,0.486213434136588,1.67690530102386,0.367687016900028,1.11123363900808,0.412070114477788,0.320919209591815,0.505394423527595,0.760437899670719,0.565879024158229,1.03005658216871,0.832326981263301,0.976402972245426,0.476293691283074,0.463537303779422,0.578727661391115,0.412085900803307,0.441596760403192,1.37147700954166,0.532427418478012,0.953744759789284,0.726732083161643,1.12931256498397,0.423073039458382,0.365855945745545,0.526139422875686,1.22223702461276,0,0.237270036248348,0.492522411877817,0.409231043169689,0.464810523557898,0.385813221962283,0.249810577937946,0.467863216890817,0,0,0,0.231867835620421 | |||
|short_description=p8@Lmo3 | |||
}} |
Revision as of 09:15, 14 September 2013
Short description: | p8@Lmo3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_Lmo3_5end |
Coexpression cluster: | MCL_coexpression_mm9:224 |
Association with transcript: | 68bp_to_ENSMUST00000162932_5end |
EntrezGene: | Lmo3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.89e-20 | 23 |
neuroblast (sensu Vertebrata) | 5.89e-20 | 23 |
granule cell | 1.49e-13 | 3 |
neuron | 2.54e-13 | 33 |
neuronal stem cell | 2.54e-13 | 33 |
neuroblast | 2.54e-13 | 33 |
electrically signaling cell | 2.54e-13 | 33 |
neuron of the ventral spinal cord | 7.18e-13 | 3 |
striatum neuron | 1.03e-12 | 3 |
electrically responsive cell | 5.68e-11 | 39 |
electrically active cell | 5.68e-11 | 39 |
neural cell | 9.04e-10 | 43 |
ectodermal cell | 1.67e-09 | 44 |
neurectodermal cell | 1.67e-09 | 44 |
neuron of the dorsal spinal cord | 2.64e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
spinal cord | 5.13e-24 | 6 |
dorsal region element | 5.13e-24 | 6 |
dorsum | 5.13e-24 | 6 |
regional part of spinal cord | 1.62e-20 | 5 |
gray matter of spinal cord | 1.62e-20 | 5 |
corpus striatum | 6.69e-13 | 5 |
striatum | 6.69e-13 | 5 |
ventral part of telencephalon | 6.69e-13 | 5 |
future corpus striatum | 6.69e-13 | 5 |
ventral horn of spinal cord | 7.18e-13 | 3 |
posterior neural tube | 9.42e-12 | 12 |
chordal neural plate | 9.42e-12 | 12 |
dorsal horn of spinal cord | 2.64e-09 | 2 |
central nervous system | 2.33e-08 | 73 |
gray matter | 2.89e-08 | 34 |
basal ganglion | 4.18e-08 | 8 |
nuclear complex of neuraxis | 4.18e-08 | 8 |
aggregate regional part of brain | 4.18e-08 | 8 |
collection of basal ganglia | 4.18e-08 | 8 |
cerebral subcortex | 4.18e-08 | 8 |
nervous system | 4.55e-08 | 75 |
neural tube | 2.06e-07 | 52 |
neural rod | 2.06e-07 | 52 |
future spinal cord | 2.06e-07 | 52 |
neural keel | 2.06e-07 | 52 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.