FFCP PHASE1:Hg19::chrX:13062844..13062866,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chrX:13062844..13062866,+|id=chrX:13062844..13062866,+|ontology_enrichment_celltype=CL:0000039!2.16e-28!7;CL:0000586!2.16e-28!7;CL:0000319!6.72e-09!1|ontology_enrichment_celltype_v019=CL:0000039;5.92e-59;7!CL:0000586;5.92e-59;7!CL:0000054;1.33e-09;2!CL:0000137;1.33e-09;2!CL:0000092;1.33e-09;2|ontology_enrichment_celltype_v019_2=CL:0000039,5.58e-59,7;CL:0000586,5.58e-59,7;CL:0000054,1.33e-09,2;CL:0000137,1.33e-09,2;CL:0000092,1.33e-09,2|ontology_enrichment_development_v019=UBERON:0009117;2.79e-41;10!UBERON:0005564;2.79e-41;10!UBERON:0003918;1.49e-07;10!UBERON:0007687;1.49e-07;10!UBERON:0006603;2.59e-07;65|ontology_enrichment_disease=DOID:3095!1.30e-12!22;DOID:2994!1.30e-12!22;DOID:0060085!2.60e-09!1;DOID:3165!2.60e-09!1;DOID:0060121!2.60e-09!1;DOID:2438!2.60e-09!1;DOID:4418!2.60e-09!1;DOID:3030!6.72e-09!1|ontology_enrichment_disease_v019=DOID:3095;5.76e-27;22!DOID:2994;5.76e-27;22!DOID:0060085;7.37e-18;1!DOID:3165;7.37e-18;1!DOID:0060121;7.37e-18;1!DOID:2438;7.37e-18;1!DOID:4418;7.37e-18;1!DOID:200;1.33e-09;2!DOID:4305;1.33e-09;2|ontology_enrichment_disease_v019_2=DOID:3095,5.63e-27,22;DOID:2994,5.63e-27,22;DOID:0060085,7.37e-18,1;DOID:3165,7.37e-18,1;DOID:0060121,7.37e-18,1;DOID:2438,7.37e-18,1;DOID:4418,7.37e-18,1;DOID:200,1.33e-09,2;DOID:4305,1.33e-09,2;DOID:7,4.02e-07,39|ontology_enrichment_uberon=UBERON:0000473!4.86e-35!8;UBERON:0003135!2.21e-25!11;UBERON:0000991!4.44e-13!21;UBERON:0009196!4.44e-13!21;UBERON:0009117!4.44e-13!21;UBERON:0005564!4.44e-13!21;UBERON:0004176!1.84e-12!22;UBERON:0003101!1.84e-12!22;UBERON:0000079!1.84e-12!22;UBERON:0002323!8.77e-10!46;UBERON:0004458!4.06e-09!49;UBERON:0002426!4.19e-09!1;UBERON:0003831!4.19e-09!1;UBERON:0003898!4.19e-09!1;UBERON:0004830!4.19e-09!1;UBERON:0001774!4.19e-09!1;UBERON:0003830!4.19e-09!1;UBERON:0005175!4.19e-09!1;UBERON:0003897!4.19e-09!1;UBERON:0001103!4.19e-09!1;UBERON:0010084!4.19e-09!1;UBERON:0003886!7.53e-07!63|ontology_enrichment_uberon_v019=UBERON:0000473;1.62e-51;8!UBERON:0003135;1.48e-37;11!UBERON:0000991;8.95e-20;21!UBERON:0003101;6.98e-19;22!UBERON:0000079;6.98e-19;22!UBERON:0002323;1.18e-07;45!UBERON:0003133;3.55e-07;44!UBERON:0002369;6.14e-07;3!UBERON:0001235;6.14e-07;3!UBERON:0006858;6.14e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.62e-51,8;UBERON:0003135,1.48e-37,11;UBERON:0000991,8.95e-20,21;UBERON:0009196,8.95e-20,21;UBERON:0009117,8.95e-20,21;UBERON:0005564,8.95e-20,21;UBERON:0004176,6.98e-19,22;UBERON:0003101,6.98e-19,22;UBERON:0000079,6.98e-19,22;UBERON:0002323,4.59e-09,46;UBERON:0003133,1.09e-08,48;UBERON:0004458,1.65e-08,49;UBERON:0003886,1.01e-07,54;UBERON:0005156,4.60e-07,59;UBERON:0000990,4.60e-07,59;UBERON:0002369,6.14e-07,3;UBERON:0001235,6.14e-07,3;UBERON:0006858,6.14e-07,3;UBERON:0002553,7.87e-07,61|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209658645508376,0,0,0.16072558669708,0,0,0.547992461293902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.72038491523742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38895653772983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.88743956579008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.6263914796833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.39024218228418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.7755776223568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.6109819790235,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.86889507080059,1.42784361638774,20.041305394917,9.92464914976325,7.0198111001865,0.378893491091197,1.33982065078089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406896178315738,0,0,0|short_description=p@chrX:13062844..13062866,+}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chrX:13062844..13062866,+ | |||
|id=chrX:13062844..13062866,+ | |||
|ontology_enrichment_celltype=CL:0000039!2.16e-28!7;CL:0000586!2.16e-28!7;CL:0000319!6.72e-09!1 | |||
|ontology_enrichment_celltype_v019=CL:0000039;5.92e-59;7!CL:0000586;5.92e-59;7!CL:0000054;1.33e-09;2!CL:0000137;1.33e-09;2!CL:0000092;1.33e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,5.58e-59,7;CL:0000586,5.58e-59,7;CL:0000054,1.33e-09,2;CL:0000137,1.33e-09,2;CL:0000092,1.33e-09,2 | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.79e-41;10!UBERON:0005564;2.79e-41;10!UBERON:0003918;1.49e-07;10!UBERON:0007687;1.49e-07;10!UBERON:0006603;2.59e-07;65 | |||
|ontology_enrichment_disease=DOID:3095!1.30e-12!22;DOID:2994!1.30e-12!22;DOID:0060085!2.60e-09!1;DOID:3165!2.60e-09!1;DOID:0060121!2.60e-09!1;DOID:2438!2.60e-09!1;DOID:4418!2.60e-09!1;DOID:3030!6.72e-09!1 | |||
|ontology_enrichment_disease_v019=DOID:3095;5.76e-27;22!DOID:2994;5.76e-27;22!DOID:0060085;7.37e-18;1!DOID:3165;7.37e-18;1!DOID:0060121;7.37e-18;1!DOID:2438;7.37e-18;1!DOID:4418;7.37e-18;1!DOID:200;1.33e-09;2!DOID:4305;1.33e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,5.63e-27,22;DOID:2994,5.63e-27,22;DOID:0060085,7.37e-18,1;DOID:3165,7.37e-18,1;DOID:0060121,7.37e-18,1;DOID:2438,7.37e-18,1;DOID:4418,7.37e-18,1;DOID:200,1.33e-09,2;DOID:4305,1.33e-09,2;DOID:7,4.02e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0000473!4.86e-35!8;UBERON:0003135!2.21e-25!11;UBERON:0000991!4.44e-13!21;UBERON:0009196!4.44e-13!21;UBERON:0009117!4.44e-13!21;UBERON:0005564!4.44e-13!21;UBERON:0004176!1.84e-12!22;UBERON:0003101!1.84e-12!22;UBERON:0000079!1.84e-12!22;UBERON:0002323!8.77e-10!46;UBERON:0004458!4.06e-09!49;UBERON:0002426!4.19e-09!1;UBERON:0003831!4.19e-09!1;UBERON:0003898!4.19e-09!1;UBERON:0004830!4.19e-09!1;UBERON:0001774!4.19e-09!1;UBERON:0003830!4.19e-09!1;UBERON:0005175!4.19e-09!1;UBERON:0003897!4.19e-09!1;UBERON:0001103!4.19e-09!1;UBERON:0010084!4.19e-09!1;UBERON:0003886!7.53e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.62e-51;8!UBERON:0003135;1.48e-37;11!UBERON:0000991;8.95e-20;21!UBERON:0003101;6.98e-19;22!UBERON:0000079;6.98e-19;22!UBERON:0002323;1.18e-07;45!UBERON:0003133;3.55e-07;44!UBERON:0002369;6.14e-07;3!UBERON:0001235;6.14e-07;3!UBERON:0006858;6.14e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.62e-51,8;UBERON:0003135,1.48e-37,11;UBERON:0000991,8.95e-20,21;UBERON:0009196,8.95e-20,21;UBERON:0009117,8.95e-20,21;UBERON:0005564,8.95e-20,21;UBERON:0004176,6.98e-19,22;UBERON:0003101,6.98e-19,22;UBERON:0000079,6.98e-19,22;UBERON:0002323,4.59e-09,46;UBERON:0003133,1.09e-08,48;UBERON:0004458,1.65e-08,49;UBERON:0003886,1.01e-07,54;UBERON:0005156,4.60e-07,59;UBERON:0000990,4.60e-07,59;UBERON:0002369,6.14e-07,3;UBERON:0001235,6.14e-07,3;UBERON:0006858,6.14e-07,3;UBERON:0002553,7.87e-07,61 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209658645508376,0,0,0.16072558669708,0,0,0.547992461293902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.72038491523742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38895653772983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.88743956579008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.6263914796833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.39024218228418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.7755776223568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.6109819790235,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.86889507080059,1.42784361638774,20.041305394917,9.92464914976325,7.0198111001865,0.378893491091197,1.33982065078089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | |||
|short_description=p@chrX:13062844..13062866,+ | |||
}} |
Revision as of 10:44, 14 September 2013
Short description: | p@chrX:13062844..13062866, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chrX:13062844..13062866, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 5.58e-59 | 7 |
germ cell | 5.58e-59 | 7 |
bone matrix secreting cell | 1.33e-09 | 2 |
osteocyte | 1.33e-09 | 2 |
osteoclast | 1.33e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
testis | 1.62e-51 | 8 |
male reproductive organ | 1.48e-37 | 11 |
gonad | 8.95e-20 | 21 |
indifferent external genitalia | 8.95e-20 | 21 |
indifferent gonad | 8.95e-20 | 21 |
gonad primordium | 8.95e-20 | 21 |
external genitalia | 6.98e-19 | 22 |
male organism | 6.98e-19 | 22 |
male reproductive system | 6.98e-19 | 22 |
body cavity | 4.59e-09 | 46 |
reproductive organ | 1.09e-08 | 48 |
body cavity or lining | 1.65e-08 | 49 |
body cavity precursor | 1.01e-07 | 54 |
reproductive structure | 4.60e-07 | 59 |
reproductive system | 4.60e-07 | 59 |
adrenal gland | 6.14e-07 | 3 |
adrenal cortex | 6.14e-07 | 3 |
adrenal/interrenal gland | 6.14e-07 | 3 |
anatomical cavity | 7.87e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 5.63e-27 | 22 |
germ cell cancer | 5.63e-27 | 22 |
organ system benign neoplasm | 7.37e-18 | 1 |
skin benign neoplasm | 7.37e-18 | 1 |
integumentary system benign neoplasm | 7.37e-18 | 1 |
dermis tumor | 7.37e-18 | 1 |
cutaneous fibrous histiocytoma | 7.37e-18 | 1 |
giant cell tumor | 1.33e-09 | 2 |
bone giant cell tumor | 1.33e-09 | 2 |
disease of anatomical entity | 4.02e-07 | 39 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.