FFCP PHASE1:Mm9::chr7:3332459..3332497,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=3621|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr7:3332459..3332497,+|id=chr7:3332459..3332497,+|ontology_enrichment_celltype=CL:0002319!3.04e-11!43;CL:0000221!3.30e-11!44;CL:0000133!3.30e-11!44;CL:0000540!3.91e-10!33;CL:0000047!3.91e-10!33;CL:0000031!3.91e-10!33;CL:0000404!3.91e-10!33;CL:0000055!1.32e-08!50;CL:0000393!5.91e-08!39;CL:0000211!5.91e-08!39|ontology_enrichment_celltype_v019_2=CL:0002319,1.96e-11,43;CL:0000221,2.12e-11,44;CL:0000133,2.12e-11,44;CL:0000540,1.33e-10,33;CL:0000047,1.33e-10,33;CL:0000031,1.33e-10,33;CL:0000404,1.33e-10,33;CL:0000393,6.56e-08,39;CL:0000211,6.56e-08,39;CL:0000117,8.30e-07,23;CL:0000337,8.30e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!9.48e-19!73;UBERON:0005743!9.48e-19!73;UBERON:0000073!9.83e-18!75;UBERON:0001016!9.83e-18!75;UBERON:0004121!6.93e-16!102;UBERON:0000924!6.93e-16!102;UBERON:0006601!6.93e-16!102;UBERON:0002346!9.70e-14!71;UBERON:0003075!9.70e-14!71;UBERON:0007284!9.70e-14!71;UBERON:0000033!3.44e-12!63;UBERON:0000468!6.96e-11!333;UBERON:0000955!1.70e-10!50;UBERON:0006238!1.70e-10!50;UBERON:0001049!2.41e-10!52;UBERON:0005068!2.41e-10!52;UBERON:0006241!2.41e-10!52;UBERON:0007135!2.41e-10!52;UBERON:0002616!5.69e-10!49;UBERON:0000922!1.67e-08!328;UBERON:0003056!2.11e-08!49|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.09e-19,73;UBERON:0001016,2.86e-18,75;UBERON:0004121,4.41e-16,95;UBERON:0000924,4.41e-16,95;UBERON:0006601,4.41e-16,95;UBERON:0002346,3.76e-15,64;UBERON:0003075,3.76e-15,64;UBERON:0007284,3.76e-15,64;UBERON:0010371,2.17e-12,73;UBERON:0000073,8.64e-12,54;UBERON:0010314,3.97e-11,92;UBERON:0001049,7.97e-11,52;UBERON:0005068,7.97e-11,52;UBERON:0006241,7.97e-11,52;UBERON:0007135,7.97e-11,52;UBERON:0000955,1.27e-09,47;UBERON:0006238,1.27e-09,47;UBERON:0002616,4.30e-09,46;UBERON:0003056,6.91e-09,49|phase1_expression=11.0502704502308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137114433605739,0,1.87095238332354,0,0,0,0,0,0,0,0.190023419456374,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,1.1330713617802,1.31790010585369,3.30384153891027,7.04152209913235,12.209408757305,4.83309602015838,3.69416808241138,4.75953833526233,7.18762821824858,0,0,0,0.771778308107841,0.573066879877513,0,8.9019242778223,5.81890077199236,8.87363964908651,0,0.889294796111139,0,0,0,12.583204641773,16.5213871288268,6.11768712620018,6.07526722492608,6.94072372459561,9.14083150092171,6.40518768759679,6.36952155917761,6.80502844229478,11.9498442259303,9.91042928994498,10.4703617229854,14.5926206593431,4.08847491963601,2.92760459527711,3.64639359389732,13.1216009530649,3.93933827022176,7.33431589328689,8.54422897873636,6.69146899755784,5.03278503728312,0.227178579999552,0.302286240427142,0.289864488701678,0,0.679971333707751,0,0,0,1.40444420131752,0,0,0.70667914902068,3.80277233397037,0,0,0,0,0,0,0.22836775943812,3.36619248741323,0.445326417194474,4.8575891494518,5.48037860961854,2.99800146432876,2.26083960828934,4.70354828542819,0.502666365318702,0,0.289198713839823,0.884610551949874,3.72063754879041,0.441683036920787,0.484875253135222,0,10.8328894894272,22.4107976290397,0.510914110417183,0,0,0,8.53806644607489,5.03250663100489,2.38743269014442,6.08385120672968,6.64860189058859,9.14267396062064,7.30085683804909,18.7384429484582,0.622034853050465,0,0,18.3469824577412,11.2652031172402,9.54329287968351,13.5634336052144,9.72921937863988,10.1209839025031,5.62210347358373,5.17406741478031,11.4251036254406,20.9907748986279,24.9850596312807,15.5628970023578,22.2437799380478,13.9300866608867,10.0833246839892,9.35461054046918,0,0,0,3.10688658803253,4.69052119962192,1.98068267607116,4.97163944728941,1.57411385397923,3.08534225774756,2.32533944750408,1.07309360559848,1.28441876603886,1.31647879930784,4.26835406605648,1.05389452409612,1.02339991197733,2.19550115291051,1.20785776884335,3.36463917702604,2.26390147234426,0,0,17.276348293354,11.8440702648824,14.1754207454303,11.2942773789072,11.1189021922435,8.3699275489526,0.474529061544512,3.95277491337626,2.5133520880027,2.38747766449381,2.72949721966768,0,1.51296634912286,0.398282546508734,3.41402221715547,5.36968009265725,3.38123207019241,2.24016460629846,2.71533482034676,2.80543279561274,1.07502113111237,0.295220295959204,0.156998727841375,0.246794327843601,0,0.83422552858047,1.17935397067922,0.224862112384854,0.405720242777006,0.72353147925725,0.25462585178142,0,0.324270453550071,0,1.43768206527355,0,0.312037673114561,0,0,0,0.184753190166605,7.57965647081939,7.98528384565927,6.62005834523234,2.81628297946203,1.17254380209271,2.14239276797412,1.17080188714679,1.57635144106191,1.55025282754142,0.318909537314974,0.163863314715738,0.172684981865896,0.144649058581512,0,0,0,0.275936746304732,10.5963389391943,11.9555920324047,9.3442918864705,0,14.1978698737316,16.3984272604588,12.7099804662351,7.88597033243422,4.23317480756549,4.24614796183249,10.9298889452221,11.9824901743638,9.88219444866309,15.4234231882467,1.8452211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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=3621 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr7:3332459..3332497,+ | |||
|id=chr7:3332459..3332497,+ | |||
|ontology_enrichment_celltype=CL:0002319!3.04e-11!43;CL:0000221!3.30e-11!44;CL:0000133!3.30e-11!44;CL:0000540!3.91e-10!33;CL:0000047!3.91e-10!33;CL:0000031!3.91e-10!33;CL:0000404!3.91e-10!33;CL:0000055!1.32e-08!50;CL:0000393!5.91e-08!39;CL:0000211!5.91e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.96e-11,43;CL:0000221,2.12e-11,44;CL:0000133,2.12e-11,44;CL:0000540,1.33e-10,33;CL:0000047,1.33e-10,33;CL:0000031,1.33e-10,33;CL:0000404,1.33e-10,33;CL:0000393,6.56e-08,39;CL:0000211,6.56e-08,39;CL:0000117,8.30e-07,23;CL:0000337,8.30e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.48e-19!73;UBERON:0005743!9.48e-19!73;UBERON:0000073!9.83e-18!75;UBERON:0001016!9.83e-18!75;UBERON:0004121!6.93e-16!102;UBERON:0000924!6.93e-16!102;UBERON:0006601!6.93e-16!102;UBERON:0002346!9.70e-14!71;UBERON:0003075!9.70e-14!71;UBERON:0007284!9.70e-14!71;UBERON:0000033!3.44e-12!63;UBERON:0000468!6.96e-11!333;UBERON:0000955!1.70e-10!50;UBERON:0006238!1.70e-10!50;UBERON:0001049!2.41e-10!52;UBERON:0005068!2.41e-10!52;UBERON:0006241!2.41e-10!52;UBERON:0007135!2.41e-10!52;UBERON:0002616!5.69e-10!49;UBERON:0000922!1.67e-08!328;UBERON:0003056!2.11e-08!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.09e-19,73;UBERON:0001016,2.86e-18,75;UBERON:0004121,4.41e-16,95;UBERON:0000924,4.41e-16,95;UBERON:0006601,4.41e-16,95;UBERON:0002346,3.76e-15,64;UBERON:0003075,3.76e-15,64;UBERON:0007284,3.76e-15,64;UBERON:0010371,2.17e-12,73;UBERON:0000073,8.64e-12,54;UBERON:0010314,3.97e-11,92;UBERON:0001049,7.97e-11,52;UBERON:0005068,7.97e-11,52;UBERON:0006241,7.97e-11,52;UBERON:0007135,7.97e-11,52;UBERON:0000955,1.27e-09,47;UBERON:0006238,1.27e-09,47;UBERON:0002616,4.30e-09,46;UBERON:0003056,6.91e-09,49 | |||
|phase1_expression=11.0502704502308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137114433605739,0,1.87095238332354,0,0,0,0,0,0,0,0.190023419456374,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,1.1330713617802,1.31790010585369,3.30384153891027,7.04152209913235,12.209408757305,4.83309602015838,3.69416808241138,4.75953833526233,7.18762821824858,0,0,0,0.771778308107841,0.573066879877513,0,8.9019242778223,5.81890077199236,8.87363964908651,0,0.889294796111139,0,0,0,12.583204641773,16.5213871288268,6.11768712620018,6.07526722492608,6.94072372459561,9.14083150092171,6.40518768759679,6.36952155917761,6.80502844229478,11.9498442259303,9.91042928994498,10.4703617229854,14.5926206593431,4.08847491963601,2.92760459527711,3.64639359389732,13.1216009530649,3.93933827022176,7.33431589328689,8.54422897873636,6.69146899755784,5.03278503728312,0.227178579999552,0.302286240427142,0.289864488701678,0,0.679971333707751,0,0,0,1.40444420131752,0,0,0.70667914902068,3.80277233397037,0,0,0,0,0,0,0.22836775943812,3.36619248741323,0.445326417194474,4.8575891494518,5.48037860961854,2.99800146432876,2.26083960828934,4.70354828542819,0.502666365318702,0,0.289198713839823,0.884610551949874,3.72063754879041,0.441683036920787,0.484875253135222,0,10.8328894894272,22.4107976290397,0.510914110417183,0,0,0,8.53806644607489,5.03250663100489,2.38743269014442,6.08385120672968,6.64860189058859,9.14267396062064,7.30085683804909,18.7384429484582,0.622034853050465,0,0,18.3469824577412,11.2652031172402,9.54329287968351,13.5634336052144,9.72921937863988,10.1209839025031,5.62210347358373,5.17406741478031,11.4251036254406,20.9907748986279,24.9850596312807,15.5628970023578,22.2437799380478,13.9300866608867,10.0833246839892,9.35461054046918,0,0,0,3.10688658803253,4.69052119962192,1.98068267607116,4.97163944728941,1.57411385397923,3.08534225774756,2.32533944750408,1.07309360559848,1.28441876603886,1.31647879930784,4.26835406605648,1.05389452409612,1.02339991197733,2.19550115291051,1.20785776884335,3.36463917702604,2.26390147234426,0,0,17.276348293354,11.8440702648824,14.1754207454303,11.2942773789072,11.1189021922435,8.3699275489526,0.474529061544512,3.95277491337626,2.5133520880027,2.38747766449381,2.72949721966768,0,1.51296634912286,0.398282546508734,3.41402221715547,5.36968009265725,3.38123207019241,2.24016460629846,2.71533482034676,2.80543279561274,1.07502113111237,0.295220295959204,0.156998727841375,0.246794327843601,0,0.83422552858047,1.17935397067922,0.224862112384854,0.405720242777006,0.72353147925725,0.25462585178142,0,0.324270453550071,0,1.43768206527355,0,0.312037673114561,0,0,0,0.184753190166605,7.57965647081939,7.98528384565927,6.62005834523234,2.81628297946203,1.17254380209271,2.14239276797412,1.17080188714679,1.57635144106191,1.55025282754142,0.318909537314974,0.163863314715738,0.172684981865896,0.144649058581512,0,0,0,0.275936746304732,10.5963389391943,11.9555920324047,9.3442918864705,0,14.1978698737316,16.3984272604588,12.7099804662351,7.88597033243422,4.23317480756549,4.24614796183249,10.9298889452221,11.9824901743638,9.88219444866309,15.4234231882467,1.84522110770749,17.6284947630583,18.8948872850148,5.1140738121486,0,9.95400608235424,7.55808892411878,4.71512699389745,7.38254732201932,6.14870295887855,3.35956781118687,6.18007340111759,4.63446591900138,1.8962205476149,0,0,2.04263763452273,12.0640933000978,7.63216234318252,4.50107773566344,5.49754724291048,4.28085162244969,4.44282355625727,7.00269382963578,0.469343416127421,0.21183207086382,0,0.32977250588296,2.42196640043858,2.11095237248546,0.716234064018819,0.492422699235184,0.874442509889552,10.198391610578,0.170870880797853,1.65109494370578,1.11116716421827,0.188368457004691,0,0.228778173206523,0,0,0,1.90934123603023,16.1331356726379,17.0788352386553,10.3685127188929,11.4998562807958,7.64268973111622,3.64133735239016,4.3806331534428,1.04702376793612,0.90730481304255,0,0,2.8408143748356,5.29467169462712,10.6948153589226,10.7202653486517,12.3337971608268,15.256441023948,4.9477666240701,1.8874681996628,0.241584120826006,0.576060012515731,0,3.24360344464263,3.3894615864393,1.03936658382236,2.68540043501222,1.78813219303138,0.360586348559907,0,0,0.0762068066549998,0.100826185136841,0.0974578807397524,0.0962118416403295,0,0.453460767230423,0.887943813496259,0.448569283047378,0.503653849092235,0.579568782096571,0.563047426353546,4.76194223094889,1.50057865355346,0.501572104035363,4.51801474093653,3.68260189205742,4.01026859407578,8.76451229952807,1.37016503954128,12.0863023582352,5.40018000185445,6.30449684513909,5.43770890781046,3.62432218226274,12.8696311004379,17.9561193030464,11.0976843740187,8.265628380322,8.59413966774727,6.80220981265052,7.3341420174533,5.15087643097235,8.02298023979538,4.54854981174835,8.11133759648767,7.54505365544305,4.49479235855436,5.57018825922363,5.45636955078326,7.62069906052918,4.1718357340148,3.8581844092741,4.53294490883637,8.39033844766065,3.08582327146874,6.21165321557681,3.57654284920981,5.95920308192547,5.92889096616583,5.16149108139227,6.21955107767427,6.05060336307039,4.48153575691344,5.05028044491965,3.6776855618494,4.23569274214923,3.27384834535751,4.49316839439301,4.82266527452853,10.4920442733937,5.84829021113521,5.15690529715916,7.26895661861605,1.76473135295612,2.31867835620421 | |||
|short_description=p@chr7:3332459..3332497,+ | |||
}} |
Revision as of 13:20, 14 September 2013
Short description: | p@chr7:3332459..3332497, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr7:3332459..3332497, + |
Coexpression cluster: | MCL_coexpression_mm9:3621 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.96e-11 | 43 |
ectodermal cell | 2.12e-11 | 44 |
neurectodermal cell | 2.12e-11 | 44 |
neuron | 1.33e-10 | 33 |
neuronal stem cell | 1.33e-10 | 33 |
neuroblast | 1.33e-10 | 33 |
electrically signaling cell | 1.33e-10 | 33 |
electrically responsive cell | 6.56e-08 | 39 |
electrically active cell | 6.56e-08 | 39 |
CNS neuron (sensu Vertebrata) | 8.30e-07 | 23 |
neuroblast (sensu Vertebrata) | 8.30e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.09e-19 | 73 |
nervous system | 2.86e-18 | 75 |
ectoderm-derived structure | 4.41e-16 | 95 |
ectoderm | 4.41e-16 | 95 |
presumptive ectoderm | 4.41e-16 | 95 |
neurectoderm | 3.76e-15 | 64 |
neural plate | 3.76e-15 | 64 |
presumptive neural plate | 3.76e-15 | 64 |
ecto-epithelium | 2.17e-12 | 73 |
regional part of nervous system | 8.64e-12 | 54 |
structure with developmental contribution from neural crest | 3.97e-11 | 92 |
neural tube | 7.97e-11 | 52 |
neural rod | 7.97e-11 | 52 |
future spinal cord | 7.97e-11 | 52 |
neural keel | 7.97e-11 | 52 |
brain | 1.27e-09 | 47 |
future brain | 1.27e-09 | 47 |
regional part of brain | 4.30e-09 | 46 |
pre-chordal neural plate | 6.91e-09 | 49 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.