FFCP PHASE1:Hg19::chr1:66993130..66993141,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C40 | |||
|description=CAGE_peak_at_chr1:66993130..66993141,+ | |||
|id=chr1:66993130..66993141,+ | |||
|ontology_enrichment_celltype=CL:1000306!4.64e-11!4;CL:0002547!4.64e-11!4;CL:0002544!6.83e-08!6;CL:0002586!1.98e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002097;1.07e-17;2!CL:0000174;2.89e-12;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002097,1.07e-17,2;CL:0000174,2.89e-12,3 | |||
|ontology_enrichment_development_v019=UBERON:0003056;7.81e-45;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5409;1.44e-09;4!DOID:170;8.97e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,1.44e-09,4;DOID:170,8.97e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0000966!2.98e-16!5;UBERON:0005388!2.98e-16!5;UBERON:0001802!2.98e-16!5;UBERON:0000947!2.08e-13!21;UBERON:0010191!2.08e-13!21;UBERON:0004573!1.49e-12!33;UBERON:0004571!1.49e-12!33;UBERON:0000415!4.64e-11!4;UBERON:0007240!4.64e-11!4;UBERON:0005742!4.64e-11!4;UBERON:0005734!4.64e-11!4;UBERON:0004664!4.64e-11!4;UBERON:0004663!4.64e-11!4;UBERON:0001905!7.96e-11!2;UBERON:0002757!7.96e-11!2;UBERON:0010134!7.96e-11!2;UBERON:0002784!7.96e-11!2;UBERON:0005408!7.96e-11!2;UBERON:0001899!7.96e-11!2;UBERON:0001637!1.84e-09!42;UBERON:0003509!1.84e-09!42;UBERON:0004572!1.84e-09!42;UBERON:0001781!1.98e-07!3;UBERON:0001782!1.98e-07!3;UBERON:0005424!1.98e-07!3;UBERON:0000055!2.09e-07!69;UBERON:0001981!2.32e-07!60;UBERON:0007500!2.32e-07!60;UBERON:0004537!2.32e-07!60;UBERON:0006965!2.32e-07!60 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;2.08e-27;5!UBERON:0005388;2.08e-27;5!UBERON:0001802;2.08e-27;5!UBERON:0001905;1.27e-17;2!UBERON:0002757;1.27e-17;2!UBERON:0010134;1.27e-17;2!UBERON:0005408;1.27e-17;2!UBERON:0001899;1.27e-17;2!UBERON:0000970;1.06e-15;20!UBERON:0002104;5.40e-15;21!UBERON:0000020;9.23e-14;23!UBERON:0001032;3.20e-13;24!UBERON:0004456;3.20e-13;24!UBERON:0002369;2.89e-12;3!UBERON:0001235;2.89e-12;3!UBERON:0006858;2.89e-12;3!UBERON:0003296;1.70e-09;4!UBERON:0010133;1.70e-09;4!UBERON:0002784;1.70e-09;4!UBERON:0000019;5.54e-08;19!UBERON:0000047;5.54e-08;19!UBERON:0004088;5.54e-08;19!UBERON:0010230;5.54e-08;19!UBERON:0001456;2.60e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,4.86e-23,6;UBERON:0005388,4.86e-23,6;UBERON:0001802,4.86e-23,6;UBERON:0001905,1.27e-17,2;UBERON:0002757,1.27e-17,2;UBERON:0010134,1.27e-17,2;UBERON:0005408,1.27e-17,2;UBERON:0001899,1.27e-17,2;UBERON:0000970,5.40e-15,21;UBERON:0002104,5.40e-15,21;UBERON:0000020,3.20e-13,24;UBERON:0001032,3.20e-13,24;UBERON:0004456,3.20e-13,24;UBERON:0002369,2.89e-12,3;UBERON:0001235,2.89e-12,3;UBERON:0006858,2.89e-12,3;UBERON:0003296,1.70e-09,4;UBERON:0010133,1.70e-09,4;UBERON:0002784,1.70e-09,4;UBERON:0000019,1.25e-07,20;UBERON:0000047,1.25e-07,20;UBERON:0010312,1.25e-07,20;UBERON:0004088,1.25e-07,20;UBERON:0010230,1.25e-07,20;UBERON:0003072,1.25e-07,20;UBERON:0004128,1.25e-07,20;UBERON:0003071,1.25e-07,20;UBERON:0001456,5.09e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0.602694528023977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39752481473341,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0.367663080345869,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0.286836620748814,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380508304469197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0.519254429183621,0,0,0,0,0,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0.769350375349168,0,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0.243713489631284,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0,0.802577647298789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0.174118413160805,0,0,0,0,0,0,0,97.62368001719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276697269872462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0.414706207840855,0,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,2.14441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764467467344097,0.169732529954025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.690359926060101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07140367175657,0.336283722218824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,64.5433193915207,24.0180689833744,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.5226835596878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124149428591716,0,0,0,0,0,0,0.0717222053926763,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:66993130..66993141,+ | |||
}} |
Revision as of 18:58, 10 January 2014
Short description: | p@chr1:66993130..66993141, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:66993130..66993141, + |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cortical cell of adrenal gland | 1.07e-17 | 2 |
steroid hormone secreting cell | 2.89e-12 | 3 |
Ontology term | p-value | n |
---|---|---|
retina | 4.86e-23 | 6 |
photoreceptor array | 4.86e-23 | 6 |
posterior segment of eyeball | 4.86e-23 | 6 |
pineal body | 1.27e-17 | 2 |
regional part of epithalamus | 1.27e-17 | 2 |
secretory circumventricular organ | 1.27e-17 | 2 |
circumventricular organ | 1.27e-17 | 2 |
epithalamus | 1.27e-17 | 2 |
eye | 5.40e-15 | 21 |
visual system | 5.40e-15 | 21 |
sense organ | 3.20e-13 | 24 |
sensory system | 3.20e-13 | 24 |
entire sense organ system | 3.20e-13 | 24 |
adrenal gland | 2.89e-12 | 3 |
adrenal cortex | 2.89e-12 | 3 |
adrenal/interrenal gland | 2.89e-12 | 3 |
gland of diencephalon | 1.70e-09 | 4 |
neuroendocrine gland | 1.70e-09 | 4 |
regional part of diencephalon | 1.70e-09 | 4 |
camera-type eye | 1.25e-07 | 20 |
simple eye | 1.25e-07 | 20 |
immature eye | 1.25e-07 | 20 |
ocular region | 1.25e-07 | 20 |
eyeball of camera-type eye | 1.25e-07 | 20 |
optic cup | 1.25e-07 | 20 |
optic vesicle | 1.25e-07 | 20 |
eye primordium | 1.25e-07 | 20 |
face | 5.09e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 1.44e-09 | 4 |
endocrine gland cancer | 8.97e-07 | 6 |