FFCP PHASE1:Hg19::chr1:93645934..93646012,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=50999 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24251 | |||
|TSSclassifier=strong | |||
|UniProt=F5H307 | |||
|association_with_transcript=0bp_to_ENST00000535517_5end | |||
|description=CAGE_peak_1_at_TMED5_5end | |||
|id=chr1:93645934..93646012,- | |||
|ontology_enrichment_celltype=CL:0000766!1.64e-30!76;CL:0000557!9.29e-27!71;CL:0002009!4.71e-26!65;CL:0000738!7.88e-26!140;CL:0002194!1.06e-25!63;CL:0000576!1.06e-25!63;CL:0000040!1.06e-25!63;CL:0000559!1.06e-25!63;CL:0000839!9.57e-24!70;CL:0002057!1.09e-22!42;CL:0002087!5.82e-22!119;CL:0000860!6.87e-21!45;CL:0002031!8.60e-21!124;CL:0002320!3.26e-17!365;CL:0000048!4.73e-17!430;CL:0000134!5.53e-17!358;CL:0000037!6.40e-16!172;CL:0000566!6.40e-16!172;CL:0000723!1.03e-15!436;CL:0002032!1.39e-15!165;CL:0000837!1.39e-15!165;CL:0000763!2.80e-15!112;CL:0000049!2.80e-15!112;CL:0000034!3.21e-14!444;CL:0000988!6.06e-14!182;CL:0000219!9.99e-12!390;CL:0002371!1.28e-07!591;CL:0000144!3.61e-07!625 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.10e-19;33!CL:0002057;8.10e-19;33!CL:0000473;2.75e-18;39!CL:0000234;2.75e-18;39!CL:0000576;3.08e-15;48!CL:0000766;1.40e-13;69!CL:0002087;3.63e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,8.85e-32,72;CL:0000557,6.03e-28,67;CL:0002009,2.45e-27,61;CL:0002194,5.14e-27,59;CL:0000576,5.14e-27,59;CL:0000040,5.14e-27,59;CL:0000559,5.14e-27,59;CL:0000738,2.70e-26,136;CL:0000473,1.16e-25,48;CL:0000234,1.16e-25,48;CL:0000839,8.43e-25,66;CL:0000860,1.09e-22,42;CL:0002057,1.09e-22,42;CL:0002087,1.91e-22,115;CL:0002031,3.21e-21,120;CL:0000048,6.15e-18,427;CL:0002320,8.18e-18,361;CL:0000134,1.38e-17,354;CL:0000723,1.48e-16,433;CL:0000037,4.21e-16,168;CL:0002032,8.97e-16,161;CL:0000837,8.97e-16,161;CL:0000763,1.29e-15,108;CL:0000049,1.29e-15,108;CL:0000034,5.14e-15,441;CL:0000988,1.60e-14,177;CL:0000219,3.45e-12,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.14e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!7.45e-25!80;UBERON:0002390!2.06e-24!102;UBERON:0003061!2.06e-24!102;UBERON:0001474!2.41e-24!86;UBERON:0004765!6.37e-24!101;UBERON:0001434!6.37e-24!101;UBERON:0002405!2.86e-22!115;UBERON:0002193!1.17e-20!112;UBERON:0002204!4.03e-20!167;UBERON:0002384!2.50e-16!375;UBERON:0000926!1.82e-09!448;UBERON:0004120!1.82e-09!448;UBERON:0006603!1.82e-09!448;UBERON:0003081!6.81e-09!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004765,1.99e-27,90;UBERON:0002371,8.51e-26,76;UBERON:0001434,2.32e-25,100;UBERON:0001474,3.48e-25,82;UBERON:0002390,4.34e-25,98;UBERON:0003061,4.34e-25,98;UBERON:0002204,1.61e-21,167;UBERON:0002193,3.79e-21,108;UBERON:0002405,4.68e-20,93;UBERON:0002384,6.66e-17,371;UBERON:0000926,1.14e-11,315;UBERON:0004120,1.14e-11,315;UBERON:0006603,1.14e-11,315;UBERON:0003081,8.85e-10,203 | |||
|phase1_expression=63.5874327446948,70.4390723601335,84.8545512657746,47.0344502259713,83.1347635634755,69.7870819280295,93.7209549222749,63.1719873426831,89.8478561007445,29.9795402531841,15.3516256953934,31.4555575867448,23.4752610623324,67.2051296573053,60.6457197582086,51.0967111303349,47.0101731858702,49.6610861463414,67.8226590318805,23.6392431507433,18.1560615207385,16.2996455168606,69.5553448728468,54.7497700291537,51.0958543150847,60.7486575696213,53.2011819635648,57.8524242655542,81.0330410308742,88.6645909604561,95.676364209335,24.824373060931,20.482002476921,36.9754010166788,40.5153459034978,49.4748929056227,34.0576509628423,109.691090889312,110.499990556048,108.939457099358,85.0878802111713,102.026504795979,102.77265148604,93.0548728189214,111.09552744451,102.370473821258,130.392689704089,140.619417703464,140.916398757272,142.120041807142,139.095263645302,141.179891243485,178.923008302305,142.652115072026,153.031929851606,107.109891199742,119.532893725336,117.755105849224,168.958308588738,142.171558994709,147.686876059579,96.9762822548945,108.508229746168,98.0316926225197,172.964706222636,167.378641283886,181.241274457712,137.181771230182,124.634417502428,137.480538698339,153.771473668876,135.157892407436,158.864118495324,64.4328623251422,68.0333759888139,64.5748628165798,88.1779754499987,76.1396846706437,75.8624769210218,67.5480202666759,64.4490034125052,55.7125668982134,66.8785728953026,58.4368314050481,66.7131940397666,58.035310269045,51.2506863406096,39.0831659169049,48.2562757132949,39.1162039359499,66.5979173858055,78.1025461863349,63.0750826406628,47.5816782884493,57.1718734241167,30.0257856643588,46.8169252870923,53.0564529711372,54.2787957358704,44.4716077739204,31.9403821300919,29.3537639555535,31.1722765452658,68.7402518981521,45.0747038436501,51.3958635434001,51.1819302515879,51.6208018494471,48.2520179447148,50.9757504271396,50.2957032370244,44.9194782889331,27.2847276218191,25.9514603247022,28.2245914273437,52.5755350116707,45.2200182450267,45.7024502491898,35.9287962667694,41.4135038621326,45.5758417699493,53.225314489109,52.8518667962982,50.8106846283041,59.966748745126,45.4612323924512,48.4465518183417,70.9655736151058,70.0693312952789,56.0470443026432,92.6466091993054,89.8739152002872,65.593494225731,50.6014813338393,33.5896400126046,50.6962816362883,29.4255800408907,30.6579968290661,50.9542664514326,51.2194908138523,44.7957407034943,32.0898734969396,12.0217445136539,10.0111799551796,106.126997725081,110.049993973137,85.757884534668,67.0158654298011,60.0594656319134,61.6619452207078,25.640350550305,30.9684454238205,21.8698516012784,24.3082415027324,27.2674633536439,44.0188867104108,33.8571845789633,42.1219317446006,58.7014333433072,54.5594598806412,27.7952228805311,31.9314284401775,29.2874469057803,50.7375050877299,25.9245423322163,47.5074554471304,39.5171695822059,40.9905788959293,32.1964938678355,17.0867818722263,29.678682516726,102.788725600129,186.134526791196,23.1129847635543,45.7214195559693,43.5608960126154,53.4933090485404,90.0666989151275,41.4962007172078,38.6867544098192,32.0246987189115,37.2467998109911,90.2512002659322,60.4850917592899,60.4809041519797,35.5689954965589,53.5843609766399,25.0723932062162,64.6171359038763,27.3826474341336,60.6761643040312,45.0948474792057,47.7525185885988,53.3713065468544,57.1631679513701,42.1321708379364,65.7151968277868,48.7081171485642,39.068174826012,24.5743567723267,12.9351265526923,46.1240952234141,51.1734746276333,73.1449264878243,51.360381643058,40.7628768412696,60.8464138571717,57.3966846789706,61.8894243126574,43.9928220966249,52.5591114875713,81.0245959427886,51.2171070315041,39.9342837070725,46.5292140828975,60.9282559390971,43.9440893277006,39.8845363305701,49.8910450641262,53.3431987502079,95.8525899794859,49.4692802297714,32.7251943159241,62.4232555717449,72.2777219565712,65.1046431533039,21.711319691068,21.2047629314376,25.7950553170331,31.5129607246726,25.9890476401897,22.2636189036256,32.8544017892614,41.8106609825375,26.2456350569713,60.3678306441573,62.0816354235844,22.5965988076102,26.2992116521839,30.6084007952022,28.1249630467605,27.4528099556432,26.0997681022206,26.1572737830719,27.8634480477991,25.3933123584618,19.9301972748655,21.0362660705169,22.636570623227,29.4017422771084,134.360336911141,219.170469319111,186.098820604642,28.6951014619523,29.6402136888904,71.5437768944852,42.2538598823208,22.4803506515239,47.5502039507014,36.2946705021436,28.6711308673086,31.1980435583874,43.299402607582,51.7049606188843,82.1860859650752,35.3697797014631,25.9271887042902,38.0508304469197,10.2726571734706,9.4433477830436,98.9792364471337,142.274593204657,95.718468513941,78.7364205488927,91.5502598683784,69.6115727460118,58.0339227114457,43.3044568385803,23.0029607499127,290.671310358607,63.3948724895228,50.3807320764076,53.3243827642757,54.158003939917,34.6063523892321,16.8074907245642,19.926966025708,41.0573870454493,33.4189351285801,41.4473419824606,41.1590062988033,29.2662130141391,46.2117672963277,40.9227634880901,58.0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| |||
|short_description=p1@TMED5 | |||
}} |
Revision as of 19:35, 10 January 2014
Short description: | p1@TMED5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TMED5_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000535517_5end |
EntrezGene: | TMED5 |
HGNC: | 24251 |
UniProt: | F5H307 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 8.85e-32 | 72 |
granulocyte monocyte progenitor cell | 6.03e-28 | 67 |
macrophage dendritic cell progenitor | 2.45e-27 | 61 |
monopoietic cell | 5.14e-27 | 59 |
monocyte | 5.14e-27 | 59 |
monoblast | 5.14e-27 | 59 |
promonocyte | 5.14e-27 | 59 |
leukocyte | 2.70e-26 | 136 |
defensive cell | 1.16e-25 | 48 |
phagocyte | 1.16e-25 | 48 |
myeloid lineage restricted progenitor cell | 8.43e-25 | 66 |
classical monocyte | 1.09e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.09e-22 | 42 |
nongranular leukocyte | 1.91e-22 | 115 |
hematopoietic lineage restricted progenitor cell | 3.21e-21 | 120 |
multi fate stem cell | 6.15e-18 | 427 |
connective tissue cell | 8.18e-18 | 361 |
mesenchymal cell | 1.38e-17 | 354 |
somatic stem cell | 1.48e-16 | 433 |
hematopoietic stem cell | 4.21e-16 | 168 |
hematopoietic oligopotent progenitor cell | 8.97e-16 | 161 |
hematopoietic multipotent progenitor cell | 8.97e-16 | 161 |
myeloid cell | 1.29e-15 | 108 |
common myeloid progenitor | 1.29e-15 | 108 |
stem cell | 5.14e-15 | 441 |
hematopoietic cell | 1.60e-14 | 177 |
motile cell | 3.45e-12 | 386 |
Ontology term | p-value | n |
---|---|---|
skeletal element | 1.99e-27 | 90 |
bone marrow | 8.51e-26 | 76 |
skeletal system | 2.32e-25 | 100 |
bone element | 3.48e-25 | 82 |
hematopoietic system | 4.34e-25 | 98 |
blood island | 4.34e-25 | 98 |
musculoskeletal system | 1.61e-21 | 167 |
hemolymphoid system | 3.79e-21 | 108 |
immune system | 4.68e-20 | 93 |
connective tissue | 6.66e-17 | 371 |
mesoderm | 1.14e-11 | 315 |
mesoderm-derived structure | 1.14e-11 | 315 |
presumptive mesoderm | 1.14e-11 | 315 |
lateral plate mesoderm | 8.85e-10 | 203 |