FFCP PHASE1:Hg19::chr1:201346801..201346815,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7139 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11949 | |||
|TSSclassifier=weak | |||
|UniProt=Q9BUF6,P45379,F8WAF6,Q7Z554 | |||
|association_with_transcript=0bp_to_ENST00000367322,ENST00000421663,ENST00000458432,ENST00000472177,ENST00000491504,NM_000364,NM_001001430,NM_001001431,NM_001001432,uc001gwf.2,uc001gwg.2,uc001gwh.2,uc001gwi.2,uc009wzr.2,uc009wzt.1_5end | |||
|coexpression_cluster_id=C20 | |||
|description=CAGE_peak_1_at_TNNT2_5end | |||
|id=chr1:201346801..201346815,- | |||
|ontology_enrichment_celltype=CL:0000188!2.58e-08!9 | |||
|ontology_enrichment_celltype_v019=CL:0000188;4.59e-11;9!CL:0000680;1.08e-08;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000188,3.94e-11,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.49e-25!115;UBERON:0000481!1.51e-11!347;UBERON:0005743!8.58e-11!86;UBERON:0001017!1.52e-10!82;UBERON:0000073!2.74e-10!94;UBERON:0001016!2.74e-10!94;UBERON:0003075!2.41e-09!86;UBERON:0007284!2.41e-09!86;UBERON:0000955!3.45e-09!69;UBERON:0006238!3.45e-09!69;UBERON:0000475!5.47e-09!365;UBERON:0000119!9.02e-09!312;UBERON:0000468!9.75e-09!659;UBERON:0000922!1.35e-08!612;UBERON:0001950!1.77e-08!20;UBERON:0001049!2.24e-08!57;UBERON:0005068!2.24e-08!57;UBERON:0006241!2.24e-08!57;UBERON:0007135!2.24e-08!57;UBERON:0002616!2.51e-08!59;UBERON:0000483!2.92e-08!309;UBERON:0002346!3.10e-08!90;UBERON:0002619!5.72e-08!22;UBERON:0000062!1.13e-07!511;UBERON:0004121!1.21e-07!169;UBERON:0000064!1.38e-07!219;UBERON:0003103!2.94e-07!69;UBERON:0000924!5.53e-07!173;UBERON:0006601!5.53e-07!173;UBERON:0001893!5.63e-07!34;UBERON:0002780!6.37e-07!41;UBERON:0001890!6.37e-07!41;UBERON:0006240!6.37e-07!41;UBERON:0002050!6.98e-07!605;UBERON:0005423!6.98e-07!605;UBERON:0000153!9.75e-07!129;UBERON:0007811!9.75e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;3.31e-16;16!UBERON:0002036;3.31e-16;16!UBERON:0001950;6.05e-10;20!UBERON:0002619;1.11e-08;22!UBERON:0002385;6.08e-08;31!UBERON:0001015;6.08e-08;31!UBERON:0000383;6.08e-08;31!UBERON:0007100;1.04e-07;25!UBERON:0000200;1.39e-07;6!UBERON:0000956;3.55e-07;25!UBERON:0000203;3.55e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.57e-21,114;UBERON:0001017,2.24e-10,81;UBERON:0001950,6.15e-10,20;UBERON:0001016,1.61e-09,89;UBERON:0003103,7.17e-09,68;UBERON:0002619,1.12e-08,22;UBERON:0000955,1.50e-08,68;UBERON:0006238,1.50e-08,68;UBERON:0001049,3.69e-08,56;UBERON:0005068,3.69e-08,56;UBERON:0006241,3.69e-08,56;UBERON:0007135,3.69e-08,56;UBERON:0000200,1.37e-07,6;UBERON:0001893,2.39e-07,34;UBERON:0002780,2.64e-07,41;UBERON:0001890,2.64e-07,41;UBERON:0003080,2.64e-07,41;UBERON:0006240,2.64e-07,41;UBERON:0010314,3.01e-07,132;UBERON:0000956,3.59e-07,25;UBERON:0000203,3.59e-07,25;UBERON:0011216,5.09e-07,223;UBERON:0000922,6.99e-07,592;UBERON:0003104,7.37e-07,160;UBERON:0009142,7.37e-07,160;UBERON:0007100,7.59e-07,27 | |||
|phase1_expression=0.726713517082227,0,2.53717927372748,0,1.78784437770915,1.74467704820074,0,0,0,0.491467873003018,0,0,0.527533956456907,0,0,0,0,0,0,0,0.204000691244253,0.313454721478088,0,0,0,0,0.0821005894499457,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28.2576261674202,0,0.50133791063589,0,0,0,0.0945348171640679,0,0.087834785693126,6.35248516163906,0.728590576585084,1.85392221392215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,1.49091585508596,0,0,0.286836620748814,0.354668382198357,107.089421627181,0,6.90669135568048,67.5327946817493,0.942974704487816,1.63461903113459,3.48122083583342,1.15235184896,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0.168336113954066,2.75260743718321,0,0,0,0,0.226864366320042,0,0.85422955527427,0.211931901159562,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,0.386521706326594,0,0,0.731842236777572,0.795178609928912,2.20768491452085,1.24393266018445,2.01856680700503,0.36497735907583,0,0,0,0,0,0.118306800039844,0,0,0.110293972732394,0,0,0.269662616320329,0,0,0,1.40241773803446,4.115740113314,111.726620653012,1.26755034821831,0,0,0,2.33678033231916,0,0.109750285408626,0,0.100528972411631,2.03694579348765,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0,0,0,0,0,0,0.063497894292169,0,0,3.4214489204541,0,0,0,1.45770409648969,0.43596006883328,0.66004457238855,0,0,0,16.7541013448468,5.2003718455683,0,0,0,2.28764789853036,0,0,0,2.84313558994037,0,0,0,0.099972991182057,0,0,0,0.479249710983165,4.59447743336456,2.85273810081437,160.707250401013,29.1776378021544,72.5196901121577,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,3.50119364741774,0,0.207970861530807,0.178428988797162,0.630809660135739,0.117141414992713,0.902838299183157,0,0,0,0.368738337083406,0,3.52442083432933,385.00692151578,0,0,0,2.12189300012382,14.9791895559447,6.35019615992329,2.72918588600655,0.460385919864187,0,4.10045277618243,0.511707249066704,4.82561763430822,1.48418066444991,0,0.177561725313127,0.0821271560138091,0,0,0.725156697549733,0,0.0920809889358963,3.78887678943202,1.0925470080403,0.131124414959424,0,0.0770153371044148,0.784349769176855,0,0,0,0,0,0,2.70946437543853,2.00675909541941,0.254876273045038,1.66215201785745,0.223874754722178,0,0,0,0.328014645699706,0.650756789328606,48.6353574977249,0,0,0,0.650060246036521,3.21367859688319,173.330597897775,26.0342162923749,60.480447842095,159.201241219633,6.76747542670124,59.8918945865764,171.475974361195,1947.48674773673,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,14.1420180356674,9.8077621662805,0,0.767693373934002,0,0,0,2.51821440616641,0.274537029736055,0.353437207037059,0,0,0,4.38870365180631,0,0,0.409499734223957,0,0,0,0,0,0,0,0,2.478587984798,0,0,0.294747123039363,0,0,0,0,0,0,0.0962221127255121,0.670302275535787,0,48.8606326031484,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,4.16613877397145,851.794671908072,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.93016358543788,0,0,0,0.71623345421307,0,3.07160702099232,0.994147647766298,0.844016498463076,0,0,1.90012867315194,5.97743964753209,3.03912307084262,0,0,0,0,0.539210106883961,0,0,47.1515478944543,0,0,8.72399471485697,22.0788073625206,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3269511191747,0.295547618953547,28.0813308357085,0,0.139423744278603,0.384751292518985,0.683652335082007,18.4451123510448,1.07709173291727,17.2749321355993,0.638002319463839,4.76307485689684,4.79731298416771,0,0,0,0,0,0,0,0,0,0.163232808159148,6.36088821452734,0,0.995261931078505,0.442287822516696,0,0,0,0,1.34802265961354,11.236087062183,0,0,0,0,0.789168805698781,0,0,9.73073326278715,0,0,0,0,0,0,0,0,0.694238953340524,1.86185555087318,0,4.54289337429278,0.343972064943233,0.0967563312890851,0.0730893170861856,0,2.32773639572207,0,40.2245718589348,0,0,25.1343859944838,2.54216797555244,0.0801588202515337,26.4681713476797,0,0,0,0,0,0,0,9.37739021907937,12.3431358648553,0,0.288950589901519,0.600420288709789,0.273810757783986,0,0,0,6723.72381062952,10133.9322706447,2996.40200458362,3167.90734291649,7903.76845038682,12946.8457605754,9486.50786554321,7.20599767084807,0,0,0,0,0,0,0,0.408610218334727,1.76828463311521,1.65047323916681,0.83088067605837,0.449947783103001,1.5476039091159,16.6453785242988,1.0063040627978,30.4190030174905,29.2172055911939,0,0,0.191915197319445,3574.90602251958,5485.4319744776,62.2957917254137,0,0,0,0,0,0,0,0,0,0,0,0,0,12.4941272704203,31.5980653250329,1.24271716604159,0,0,0,0,0,0,0,0,0,23.9238408591086,15.0092305829415,25.288568002713,1.14681839138014,2.21858103073705,3.60159137060024,0.138348634936231,0,0,0,0,0,0,0,0,0,8.14432922682883,17.8613210244328,22.2452805399134,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0.796191777397232,422.42931948429,0,0,2.52369796457302,0.192619830407303,28.949614835615,0.782982875895635,0,0,0,0,14.2048665694047,0.219284049578707,0,0.192914038270915,0,0,23.4892632377215,0,24.1952263265529,6.23552988286043,2.92302648689399,1.63565394255844,0,0,0,0,0,0,0,0,0.559518030877778,0.622077260032973,0.127894371303652,2.58779547352036,0.786329709279482,0,0,0,0,0,2.86203915588077,0,0,0,0,12.5889281189061,11.3357261060468,10.535834697772,7.58930547690793,0,13.1398779682014,21.3147852234043,0,0,0,0.183428598521679,0,0,0,0,0.526472298444801,0,1.56302802246618,0.785720083444267,6.71464861791397,0,23.097853939491,14.0594057750493,21.0820532431208,27.205382573186,0,0.548257766857182,5.45832296228224,0,0,1.07140367175657,0,4.24875922965642,1.59363533945908,6.74138013236055,0,0,0.883606528698812,22.4942885584944,0,0,14.4427290844946,0,4.76462677633441,0,0,0,0.357382720883282,0.47404083519818,8.83434832797752,99.9685065739832,2.40513409419076,0,0,5.53007729451273,0,0,0,0,59.1095720843649,0,0,0,0,0.243835849964539,0.647428837187895,34.7000287174115,321.268597480681,206.427172050134,0,0,0,0,1.64910775118144,0,0.0771741581079447,5.02686989159102,0,44.6169945592108,0,7.65603021748287,2.0793248022896,27.0499665653376,0.169927114687817,0.187967835959707,0.644578879735772,0,0,0,0,5.11235471772562,0,1.14671666521161,0.157771562193185,16.3859491360104,0.436350690340377,0,0.371995018166751,0.462175628631418,4.75889218336168,0.756998549010474,0,0.633492505057185,17.7460563751048,1.06886962106224,51.0935641413738,0,1.21245917149183,0.535928260312357,0,0.20686599172379,3.62497769231668,40.7090177802996,0.775066918032073,3.47618400056804,2.80329656451534,0.381882949668989,1.0105859447911,7.62008617639365,19.507298161861,1.34704106029175,2.36683277795832,116.098464434559,0,0.320182037633146,7.7228912914776,0.0898252021065869,1353.87823766793,0.611207220914332,1.22068853494722,2.66302709674205,71.6534705184053,0 | |||
|short_description=p1@TNNT2 | |||
}} |
Revision as of 23:17, 10 January 2014
Short description: | p1@TNNT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TNNT2_5end |
Coexpression cluster: | C20_heart_left_skeletal_diaphragm_tongue_umbilical_throat |
Association with transcript: | 0bp_to_ENST00000367322, ENST00000421663, ENST00000458432, ENST00000472177, ENST00000491504, NM_000364, NM_001001430, NM_001001431, NM_001001432, uc001gwf.2, uc001gwg.2, uc001gwh.2, uc001gwi.2, uc009wzr.2, uc009wzt.1_5end |
EntrezGene: | TNNT2 |
HGNC: | 11949 |
UniProt: | Q9BUF6P45379F8WAF6Q7Z554 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 3.94e-11 | 9 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.57e-21 | 114 |
central nervous system | 2.24e-10 | 81 |
neocortex | 6.15e-10 | 20 |
nervous system | 1.61e-09 | 89 |
compound organ | 7.17e-09 | 68 |
regional part of cerebral cortex | 1.12e-08 | 22 |
brain | 1.50e-08 | 68 |
future brain | 1.50e-08 | 68 |
neural tube | 3.69e-08 | 56 |
neural rod | 3.69e-08 | 56 |
future spinal cord | 3.69e-08 | 56 |
neural keel | 3.69e-08 | 56 |
gyrus | 1.37e-07 | 6 |
telencephalon | 2.39e-07 | 34 |
regional part of forebrain | 2.64e-07 | 41 |
forebrain | 2.64e-07 | 41 |
anterior neural tube | 2.64e-07 | 41 |
future forebrain | 2.64e-07 | 41 |
structure with developmental contribution from neural crest | 3.01e-07 | 132 |
cerebral cortex | 3.59e-07 | 25 |
pallium | 3.59e-07 | 25 |
organ system subdivision | 5.09e-07 | 223 |
embryo | 6.99e-07 | 592 |
mesenchyme | 7.37e-07 | 160 |
entire embryonic mesenchyme | 7.37e-07 | 160 |
primary circulatory organ | 7.59e-07 | 27 |