FFCP PHASE1:Hg19::chr1:213123915..213123955,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79805 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25723 | |||
|TSSclassifier=strong | |||
|UniProt=Q86V25,C9JY36 | |||
|association_with_transcript=0bp_to_ENST00000366968,ENST00000490792_5end | |||
|description=CAGE_peak_1_at_VASH2_5end | |||
|id=chr1:213123915..213123955,+ | |||
|ontology_enrichment_celltype=CL:0002319!1.36e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0002319;1.62e-08;25!CL:0000540;3.18e-07;6!CL:0000404;3.18e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.09e-08,25;CL:0000047,1.58e-08,8;CL:0000540,3.30e-07,6;CL:0000031,3.30e-07,6;CL:0000404,3.30e-07,6;CL:0000133,5.14e-07,59 | |||
|ontology_enrichment_development_v019=CL:0000031;3.18e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!3.74e-17!86;UBERON:0001017!1.67e-16!82;UBERON:0000073!3.00e-16!94;UBERON:0001016!3.00e-16!94;UBERON:0000955!7.81e-12!69;UBERON:0006238!7.81e-12!69;UBERON:0002346!1.22e-09!90;UBERON:0003075!1.91e-09!86;UBERON:0007284!1.91e-09!86;UBERON:0001049!2.59e-09!57;UBERON:0005068!2.59e-09!57;UBERON:0006241!2.59e-09!57;UBERON:0007135!2.59e-09!57;UBERON:0002616!3.92e-09!59;UBERON:0007023!4.80e-09!115;UBERON:0000924!1.11e-08!173;UBERON:0006601!1.11e-08!173;UBERON:0004121!1.93e-08!169;UBERON:0003056!1.04e-07!61;UBERON:0003080!1.14e-07!42;UBERON:0002780!1.91e-07!41;UBERON:0001890!1.91e-07!41;UBERON:0006240!1.91e-07!41;UBERON:0000153!2.92e-07!129;UBERON:0007811!2.92e-07!129;UBERON:0002020!5.48e-07!34;UBERON:0003528!5.48e-07!34;UBERON:0001869!5.86e-07!32;UBERON:0000033!8.91e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;3.91e-11;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.24e-14,89;UBERON:0001017,1.14e-13,81;UBERON:0011216,1.26e-11,223;UBERON:0000955,5.90e-09,68;UBERON:0006238,5.90e-09,68;UBERON:0004121,2.41e-08,171;UBERON:0000924,2.41e-08,171;UBERON:0006601,2.41e-08,171;UBERON:0003075,3.49e-08,82;UBERON:0007284,3.49e-08,82;UBERON:0002346,1.19e-07,86;UBERON:0001049,6.05e-07,56;UBERON:0005068,6.05e-07,56;UBERON:0006241,6.05e-07,56;UBERON:0007135,6.05e-07,56 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0.982935746006035,0,0.436882744260345,0.527533956456907,0.123766352960047,0.662794751455832,0,0,1.46062018077475,0,1.60057375499824,0.612002073732759,1.88072832886853,0.572471974262113,1.64249310087461,2.13422487311165,30.6417757049285,26.1900880345327,26.0532686148278,0.393364276848904,2.30297638858328,3.09632246632152,0,0,0,0,0,0.293600439334847,1.10799081706375,0.200544447470142,0,0,0,0,0.290796477559129,0.377875943688809,0,0,0,0,0,0,0,0.689491361473237,0,0,0,0.272906150057846,0,0,0.320929027076094,0,0,0,0,0,0.56738522469114,0.622822248995575,0.251248665256743,0.521482918420201,0.434377689410233,1.21079900526674,0.368277635987565,0.316462387440884,0,0.425208599930087,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.24203425192614,0.263384084775077,0.196709770113833,0.786021525498329,0.205601498999509,0,0,0,0,0.111410456885174,0,0.443067789167242,0,0.128091319725675,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,0.255725123687061,0,0,0,0,0,4.44313640671119,3.54767035940102,4.30390449896318,4.58426764241994,0,0,0,0.174129737299267,0,106.366818440183,69.2113842043955,111.06579289754,0,0,0,0,0,0,0,0.258416759169329,0.35576626268671,0.33472061276467,0,0,0.24406205754817,0,0,0.357198913136319,0.22452937262617,0.337834441449967,0,0,0.549605231791222,0,0,0,0,0.25326102332916,0,0,1.06400514659507,0.560677600142307,0,0,1.24484414159907,0,0,1.05950199351452,0,0,0,0,0,1.17434498643765,0.971237666208789,1.12360645361799,0.204154171254893,0.982674538494144,0.723280468230358,0,0,0,0,1.34668891163253,2.25213335769535,0,0,0,0.45071417671979,0.226864366320042,0.358779271377724,0,0,0,0,0,0.18611685633159,0.168776332241266,0.194874010322397,0,0,0.161646056818812,0,0.10075209822764,0.169560592310488,0,0,0,47.0818505660238,35.6505076784795,29.2808736031186,26.6408911389502,29.0168978506973,47.4470566798579,0,0,0,0,0,1.41968160047813,1.18009283054671,1.68707720918437,1.54411561825352,0.653638332277218,1.89816495288877,1.75280700608214,1.76599318612811,1.92373578473195,0,0,1.2347220339942,11.7606969108434,0,0,0,2.6487785964879,2.45976877086227,0.514703430895577,0,0,0.100528972411631,0.185176890317059,0,0,0,1.62302566965108,0.821860859650752,0.144366447761074,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0.383382679165211,3.94130590316755,5.01876073875388,50.1734039608668,18.8797138976219,22.597395583322,0.761974731506028,0.763976851116555,0,5.13217338068116,0.308482478109971,0,0,0.784917590417525,1.30788020649984,1.39342743059805,0.129271715757778,0,0.845302752556,0.531876233169741,0,0.771622122786426,1.41849132023278,1.0656887160644,0.57191197463259,0,0.823240336780769,0.325736184293735,0.710783897485092,0,0.301439377059586,1.74306691720059,0.099972991182057,0,0,0,0,1.14861935834114,0,1.01346914667305,0.205476322550383,0.895304816199478,0,0.197030760201927,0.431255149719035,0.128343036279748,2.28685161800217,19.5209780786433,14.6924874427762,21.2745656974623,7.65526501983796,0,0,0,0.613457458595699,0.500170521059677,0.542530047399471,0.415941723061614,0.178428988797162,0,0.117141414992713,0,2.27407504055985,1.03473071292505,1.99267679560631,0.921845842708516,0.0868836144680828,0.783204629850962,24.3631830905708,1.03384013061444,1.2942852049117,1.17400313583789,0,1.66435439510497,0.604780586659361,0,0,0.280660094433074,0.128139149255701,0,0,0,0.462629081407967,0,0.0821271560138091,0,0.232420756919918,3.2632051389738,0,0,0.229628896329213,0.546273504020151,1.57349297951309,3.60959690325929,1.00119938235739,0.784349769176855,1.46139224653261,0.73886140225013,1.13733384070897,0.170093705276516,0.863663664408557,0,0.541892875087706,2.50844886927427,0,0,0.895499018888713,0,0,1.79515087581472,0.656029291399411,0.325378394664303,0.515205058238611,6.9592793261941,4.37300349579116,0,0.650060246036521,0,8.99037680116734,3.38906957652218,5.67963596486679,9.64856007391714,0.859361958946189,6.52575122614028,18.1532716396295,52.3508369602816,0,0,0,0,0,0,0,9.24100740528266,0,0,0,0,2.97726695487734,1.89827654831236,0.38126038784765,0.511795582622668,1.71175595213568,0,0,1.2591072030832,1.64722217841633,0.353437207037059,0,0,0,0.48763373908959,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0,0,0.92947049429925,0,1.14729081763241,0.196498082026242,0,0.354761064070598,0.211107635297664,0.658589785919804,1.51789269506286,0,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0.534120355637366,0,0.245040215981032,1.11481905075431,3.02965347250534,0,0.956557636372934,0,0.191505370132367,2.75175657541048,0.973865820823666,1.40398589056729,0.912938716132769,0,2.50634477090067,0.677167111206413,0.481764225311099,0.201799707191048,0,0,0,0.223676107892416,0,0,0,0,0.270455678475983,3.3307196799782,0,0,1.31857361344705,0.36408156524854,6.24082951953879,1.13654458722565,0,1.48482340416319,0,0,1.82870241333667,0,0,1.68900326502395,0.996239941255349,3.86797481743607,0.755798243562828,0.511343412510774,44.6797843823682,0,0.179736702294654,0.358042349351218,0,2.07151151837561,0,0,0.969332746095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| |||
|short_description=p1@VASH2 | |||
}} |
Revision as of 00:08, 11 January 2014
Short description: | p1@VASH2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VASH2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000366968, ENST00000490792_5end |
EntrezGene: | VASH2 |
HGNC: | 25723 |
UniProt: | Q86V25C9JY36 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.09e-08 | 25 |
neuronal stem cell | 1.58e-08 | 8 |
neuron | 3.30e-07 | 6 |
neuroblast | 3.30e-07 | 6 |
electrically signaling cell | 3.30e-07 | 6 |
neurectodermal cell | 5.14e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.24e-14 | 89 |
central nervous system | 1.14e-13 | 81 |
organ system subdivision | 1.26e-11 | 223 |
brain | 5.90e-09 | 68 |
future brain | 5.90e-09 | 68 |
ectoderm-derived structure | 2.41e-08 | 171 |
ectoderm | 2.41e-08 | 171 |
presumptive ectoderm | 2.41e-08 | 171 |
neural plate | 3.49e-08 | 82 |
presumptive neural plate | 3.49e-08 | 82 |
neurectoderm | 1.19e-07 | 86 |
neural tube | 6.05e-07 | 56 |
neural rod | 6.05e-07 | 56 |
future spinal cord | 6.05e-07 | 56 |
neural keel | 6.05e-07 | 56 |