FFCP PHASE1:Hg19::chr12:2027832..2027849,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=93589 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20202 | |||
|TSSclassifier=strong | |||
|UniProt=Q7Z3S7 | |||
|association_with_transcript=0bp_to_ENST00000280663_5end | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_5_at_CACNA2D4_5end | |||
|id=chr12:2027832..2027849,- | |||
|ontology_enrichment_celltype=CL:0000763!3.06e-17!112;CL:0000049!3.06e-17!112;CL:0000037!1.84e-14!172;CL:0000566!1.84e-14!172;CL:0000988!4.12e-13!182;CL:0002032!1.23e-10!165;CL:0000837!1.23e-10!165;CL:0000784!9.00e-10!3;CL:0002274!2.86e-09!5;CL:0000457!2.86e-09!5;CL:0002191!2.86e-09!5;CL:0000097!2.86e-09!5;CL:0000831!2.86e-09!5;CL:0002028!2.86e-09!5;CL:0000451!7.59e-09!10;CL:0000839!9.03e-09!70;CL:0000840!1.09e-07!5;CL:0001029!1.09e-07!5;CL:0000766!1.10e-07!76;CL:0000557!1.71e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0000784;9.24e-36;3!CL:0000451;3.19e-10;10!CL:0000764;4.69e-07;2!CL:0000558;4.69e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000784,7.74e-36,3;CL:0000451,3.04e-10,10;CL:0000764,4.98e-07,2;CL:0000765,4.98e-07,2;CL:0000050,4.98e-07,2;CL:0000038,4.98e-07,2;CL:0000558,4.98e-07,2;CL:0000547,4.98e-07,2;CL:0000549,4.98e-07,2;CL:0000550,4.98e-07,2;CL:0000552,4.98e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.17e-16;3 | |||
|ontology_enrichment_disease=DOID:8692!4.61e-19!31;DOID:1240!2.81e-14!39;DOID:2531!5.85e-10!51;DOID:0060083!5.85e-10!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.04e-08!102;UBERON:0003061!2.04e-08!102;UBERON:0001905!3.17e-07!2;UBERON:0002757!3.17e-07!2;UBERON:0010134!3.17e-07!2;UBERON:0002784!3.17e-07!2;UBERON:0005408!3.17e-07!2;UBERON:0001899!3.17e-07!2;UBERON:0002193!3.50e-07!112;UBERON:0001474!3.73e-07!86;UBERON:0003296!4.04e-07!4;UBERON:0010133!4.04e-07!4;UBERON:0002371!4.47e-07!80 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;3.44e-25;2!UBERON:0002757;3.44e-25;2!UBERON:0010134;3.44e-25;2!UBERON:0005408;3.44e-25;2!UBERON:0001899;3.44e-25;2!UBERON:0003296;4.24e-13;4!UBERON:0010133;4.24e-13;4!UBERON:0002784;4.24e-13;4!UBERON:0000966;2.25e-10;5!UBERON:0005388;2.25e-10;5!UBERON:0001802;2.25e-10;5!UBERON:0001894;7.30e-08;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,3.44e-25,2;UBERON:0002757,3.44e-25,2;UBERON:0010134,3.44e-25,2;UBERON:0005408,3.44e-25,2;UBERON:0001899,3.44e-25,2;UBERON:0003296,4.24e-13,4;UBERON:0010133,4.24e-13,4;UBERON:0002784,4.24e-13,4;UBERON:0000966,8.57e-09,6;UBERON:0005388,8.57e-09,6;UBERON:0001802,8.57e-09,6;UBERON:0001894,7.30e-08,7;UBERON:0006222,7.30e-08,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0,0,0,0,0,0,0.293600439334847,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0.150176892841506,0.16072558669708,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.0654895377488563,0,0,0.324547393654683,0.522389211897802,0.664789802594326,2.8618874916641,2.28797964312051,2.60020250930695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0.264145302039678,0.829312462163088,1.00883967391873,0.75745460055828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.62786481617433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3071772551245,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5745161103971,9.31363763985085,0,0.280797178113459,0,0.783399478865116,0,0.677167111206413,0.481764225311099,0,0.425846237690326,1.71752672377882,0.614481528616916,0.447352215784832,1.66849141711908,0.390776190804081,0,0,0,0.66614393599564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.65044081294933,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0.664846727600626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.32746074185491,0,0,0,0,0,0.213452994739353,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.124192805882767,0.415045904808692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.746842107858986,0,0,0,0,0,0,0,0,0,0.33946505990805,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397832444232549,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,40.1776376908715,34.9735071107577,0,0.227662191351298,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,11.7221532449716,1.42212250559454,0,0.695433089210318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20934568419972,0,0,0,0,0,0,0.196308467114945,0,0,0,0.187967835959707,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,2.02717601618299,0,0,0,0,0,0,0,0,0.213233981900981,0,0.0645889098360061,0.248298857183432,0,0.0636471582781649,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p5@CACNA2D4 | |||
}} |
Revision as of 11:28, 11 January 2014
Short description: | p5@CACNA2D4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_CACNA2D4_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | 0bp_to_ENST00000280663_5end |
EntrezGene: | CACNA2D4 |
HGNC: | 20202 |
UniProt: | Q7Z3S7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
plasmacytoid dendritic cell | 7.74e-36 | 3 |
dendritic cell | 3.04e-10 | 10 |
erythroid lineage cell | 4.98e-07 | 2 |
erythroblast | 4.98e-07 | 2 |
megakaryocyte-erythroid progenitor cell | 4.98e-07 | 2 |
erythroid progenitor cell | 4.98e-07 | 2 |
reticulocyte | 4.98e-07 | 2 |
proerythroblast | 4.98e-07 | 2 |
basophilic erythroblast | 4.98e-07 | 2 |
polychromatophilic erythroblast | 4.98e-07 | 2 |
orthochromatic erythroblast | 4.98e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
pineal body | 3.44e-25 | 2 |
regional part of epithalamus | 3.44e-25 | 2 |
secretory circumventricular organ | 3.44e-25 | 2 |
circumventricular organ | 3.44e-25 | 2 |
epithalamus | 3.44e-25 | 2 |
gland of diencephalon | 4.24e-13 | 4 |
neuroendocrine gland | 4.24e-13 | 4 |
regional part of diencephalon | 4.24e-13 | 4 |
retina | 8.57e-09 | 6 |
photoreceptor array | 8.57e-09 | 6 |
posterior segment of eyeball | 8.57e-09 | 6 |
diencephalon | 7.30e-08 | 7 |
future diencephalon | 7.30e-08 | 7 |