FFCP PHASE1:Hg19::chr17:39777017..39777027,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C544 | |||
|description=CAGE_peak_at_chr17:39777017..39777027,+ | |||
|id=chr17:39777017..39777027,+ | |||
|ontology_enrichment_celltype=CL:0002076!5.78e-26!43;CL:0000066!6.97e-23!254;CL:0002368!4.76e-20!13;CL:0000223!1.63e-17!59;CL:0000244!1.21e-14!4;CL:0000731!1.21e-14!4;CL:0002159!4.72e-12!13;CL:0000349!1.16e-11!3;CL:0002577!1.16e-11!3;CL:0002328!1.53e-11!3;CL:0002251!8.86e-11!21;CL:0002166!1.97e-10!3;CL:0002202!9.69e-10!9;CL:0002632!9.69e-10!9;CL:0002327!2.20e-08!4 | |||
|ontology_enrichment_celltype_v019=CL:0002577;1.49e-30;3!CL:0002328;2.24e-30;3!CL:0002202;2.36e-27;9!CL:0002632;2.36e-27;9!CL:0002368;6.38e-27;13!CL:0000307;4.42e-14;3!CL:0002252;9.56e-12;1!CL:0002076;2.75e-11;42!CL:0000244;2.97e-11;4!CL:0000731;2.97e-11;4!CL:0002159;4.97e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002577,7.37e-31,3;CL:0002328,1.66e-30,3;CL:0002202,3.11e-27,9;CL:0002632,3.11e-27,9;CL:0002368,8.22e-27,13;CL:0002076,3.89e-14,42;CL:0000068,7.51e-14,3;CL:0000069,7.51e-14,3;CL:0000307,7.51e-14,3;CL:0000377,7.51e-14,3;CL:0002252,1.06e-11,1;CL:0000066,1.34e-11,253;CL:0000244,2.55e-11,4;CL:0000731,2.55e-11,4;CL:0000223,5.59e-10,58;CL:0002159,5.13e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000377;4.42e-14;3 | |||
|ontology_enrichment_disease=DOID:1749!1.83e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:3151;1.45e-11;1!DOID:3149;1.45e-11;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,1.78e-11,1;DOID:3149,1.78e-11,1 | |||
|ontology_enrichment_uberon=UBERON:0001004!6.05e-20!72;UBERON:0000065!1.18e-17!53;UBERON:0004119!1.91e-16!169;UBERON:0000925!1.91e-16!169;UBERON:0006595!1.91e-16!169;UBERON:0001737!1.53e-12!9;UBERON:0000072!1.61e-12!46;UBERON:0001557!7.05e-12!19;UBERON:0000365!1.02e-11!5;UBERON:0004815!1.53e-11!3;UBERON:0002031!1.53e-11!3;UBERON:0003729!2.96e-10!5;UBERON:0008947!3.63e-10!38;UBERON:0003258!3.63e-10!38;UBERON:0005910!9.27e-10!6;UBERON:0001987!7.78e-09!4;UBERON:0004340!7.78e-09!4;UBERON:0002185!9.56e-09!4;UBERON:0001911!2.20e-08!4;UBERON:0005333!2.20e-08!4;UBERON:0008425!2.20e-08!4;UBERON:0005311!2.20e-08!4;UBERON:0005631!3.48e-08!14;UBERON:0000158!3.48e-08!14;UBERON:0001708!6.32e-08!4;UBERON:0001704!6.32e-08!4;UBERON:0000077!7.59e-08!130;UBERON:0003343!1.64e-07!4;UBERON:0004785!1.64e-07!4;UBERON:0000974!2.08e-07!10;UBERON:0001007!6.47e-07!155;UBERON:0001555!6.47e-07!155;UBERON:0007026!6.47e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;2.24e-30;3!UBERON:0002031;2.24e-30;3!UBERON:0001987;4.28e-23;4!UBERON:0002185;1.66e-18;5!UBERON:0007196;2.06e-16;15!UBERON:0001558;2.06e-16;15!UBERON:0000485;2.15e-13;7!UBERON:0005181;5.75e-10;35!UBERON:0005178;5.78e-10;34!UBERON:0002224;5.78e-10;34!UBERON:0000365;3.53e-09;5!UBERON:0000065;7.18e-09;44!UBERON:0000072;8.45e-09;37!UBERON:0005910;8.65e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.66e-30,3;UBERON:0002031,1.66e-30,3;UBERON:0001987,2.53e-23,4;UBERON:0004340,2.53e-23,4;UBERON:0002185,1.39e-18,5;UBERON:0007196,2.43e-16,15;UBERON:0001558,2.43e-16,15;UBERON:0003124,1.34e-13,7;UBERON:0000485,1.38e-10,9;UBERON:0005178,4.02e-10,34;UBERON:0002224,4.02e-10,34;UBERON:0004119,5.78e-10,160;UBERON:0000925,5.78e-10,160;UBERON:0006595,5.78e-10,160;UBERON:0005181,8.03e-10,35;UBERON:0000365,3.12e-09,5;UBERON:0008947,6.65e-09,38;UBERON:0003258,6.65e-09,38;UBERON:0000065,3.18e-08,54;UBERON:0005910,7.83e-08,6;UBERON:0006554,2.37e-07,47;UBERON:0005157,3.07e-07,47;UBERON:0001008,3.45e-07,48;UBERON:0000072,4.07e-07,47;UBERON:0005631,4.72e-07,14;UBERON:0000158,4.72e-07,14 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,2.10844143144775,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.22470665670658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.05265836499774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0.236613600079688,1.01150814046861,0.723033089650446,0.330881918197182,0.217879444092406,0,0.269662616320329,0,0,0,0,0,0,0,0,0,0,0,0,1.09750285408626,0,0.703702806881416,0.462942225792648,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0.16798212819886,0.567100388969546,0.985143749731331,0.581267877027924,1.53353071666084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.33440328590885,1.66435439510497,1.81434175997808,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601519410909855,1.47329582297434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60024098414608,0,0,0,0,0,0,0,0,0,0.661139661443912,0.960950336825531,0.127612712494584,1.11273558941105,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05844323998063,0,1.08890984861323,0,0.86101074534246,3.36942951335251,2.66058092122005,0.918893600827838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0.307160702099232,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0.0967563312890851,0,0.0821154570532092,0,0,0,0,0,0,0,0,0,0.19980960958213,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.0126081255956,0,0,0,0,0.383830394638891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0,0,0,0,1.67855409263333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0.550285795565037,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.62164849248911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129177819672012,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr17:39777017..39777027,+ | |||
}} |
Revision as of 15:19, 20 January 2014
Short description: | p@chr17:39777017..39777027, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:39777017..39777027, + |
Coexpression cluster: | C544_nasal_Keratinocyte_Esophageal_Urothelial_Placental_Corneal_Prostate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 7.37e-31 | 3 |
bronchial epithelial cell | 1.66e-30 | 3 |
epithelial cell of tracheobronchial tree | 3.11e-27 | 9 |
epithelial cell of lower respiratory tract | 3.11e-27 | 9 |
respiratory epithelial cell | 8.22e-27 | 13 |
endo-epithelial cell | 3.89e-14 | 42 |
duct epithelial cell | 7.51e-14 | 3 |
branched duct epithelial cell | 7.51e-14 | 3 |
tracheal epithelial cell | 7.51e-14 | 3 |
tracheoblast | 7.51e-14 | 3 |
epithelial cell of esophagus | 1.06e-11 | 1 |
epithelial cell | 1.34e-11 | 253 |
transitional epithelial cell | 2.55e-11 | 4 |
urothelial cell | 2.55e-11 | 4 |
endodermal cell | 5.59e-10 | 58 |
general ecto-epithelial cell | 5.13e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.66e-30 | 3 |
epithelium of bronchus | 1.66e-30 | 3 |
placenta | 2.53e-23 | 4 |
allantois | 2.53e-23 | 4 |
bronchus | 1.39e-18 | 5 |
tracheobronchial tree | 2.43e-16 | 15 |
lower respiratory tract | 2.43e-16 | 15 |
chorion | 1.34e-13 | 7 |
simple columnar epithelium | 1.38e-10 | 9 |
thoracic cavity element | 4.02e-10 | 34 |
thoracic cavity | 4.02e-10 | 34 |
endoderm-derived structure | 5.78e-10 | 160 |
endoderm | 5.78e-10 | 160 |
presumptive endoderm | 5.78e-10 | 160 |
thoracic segment organ | 8.03e-10 | 35 |
urothelium | 3.12e-09 | 5 |
respiratory primordium | 6.65e-09 | 38 |
endoderm of foregut | 6.65e-09 | 38 |
respiratory tract | 3.18e-08 | 54 |
transitional epithelium | 7.83e-08 | 6 |
urinary system structure | 2.37e-07 | 47 |
epithelial fold | 3.07e-07 | 47 |
renal system | 3.45e-07 | 48 |
segment of respiratory tract | 4.07e-07 | 47 |
extraembryonic membrane | 4.72e-07 | 14 |
membranous layer | 4.72e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 1.78e-11 | 1 |
keratoacanthoma | 1.78e-11 | 1 |